Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00418 * 2 1 4 4 H 1.08004 * 120.00402 * 202.96524 * 3 2 1 5 5 C 1.38814 * 120.00018 * 22.95248 * 3 2 1 6 6 N 1.31624 * 119.99808 * 17.03574 * 5 3 2 7 7 Si 1.86796 * 120.00164 * 197.02590 * 5 3 2 8 8 H 1.48502 * 109.47234 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46995 * 120.00753 * 7 5 3 10 10 H 1.48505 * 109.47239 * 240.00449 * 7 5 3 11 11 C 1.46502 * 119.99706 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46865 * 90.00292 * 11 2 1 13 13 C 1.52996 * 110.75338 * 59.29843 * 12 11 2 14 14 C 1.55306 * 111.02117 * 182.89577 * 12 11 2 15 15 C 1.54953 * 100.94211 * 152.40347 * 14 12 11 16 16 O 1.43653 * 105.13394 * 323.55180 * 15 14 12 17 17 C 1.43241 * 109.97018 * 24.43166 * 16 15 14 18 18 H 1.09000 * 109.46836 * 275.26100 * 1 2 3 19 19 H 1.09003 * 109.46645 * 35.26018 * 1 2 3 20 20 H 1.08995 * 109.47053 * 155.25768 * 1 2 3 21 21 H 0.96991 * 119.99733 * 179.97438 * 6 5 3 22 22 H 1.09000 * 109.47439 * 330.00627 * 11 2 1 23 23 H 1.08999 * 109.47430 * 209.99978 * 11 2 1 24 24 H 1.09001 * 109.47396 * 297.22807 * 13 12 11 25 25 H 1.09001 * 109.47555 * 57.22669 * 13 12 11 26 26 H 1.09002 * 109.47471 * 177.23072 * 13 12 11 27 27 H 1.09003 * 111.12237 * 270.31683 * 14 12 11 28 28 H 1.08997 * 111.12682 * 34.48295 * 14 12 11 29 29 H 1.09000 * 110.31079 * 204.64009 * 15 14 12 30 30 H 1.09001 * 110.31202 * 82.46647 * 15 14 12 31 31 H 1.08999 * 109.82806 * 238.77294 * 17 16 15 32 32 H 1.09000 * 109.82926 * 117.80145 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1656 1.2229 -0.3649 5 6 1.5382 2.3404 0.4688 6 7 0.4545 2.2562 1.2111 7 14 2.2534 4.0136 0.0465 8 1 3.4643 3.8364 -0.7947 9 1 1.2451 4.8089 -0.6992 10 1 2.6189 4.7258 1.2973 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2639 -0.6564 -2.1968 14 6 3.1644 -3.0907 -1.4838 15 6 2.6761 -3.6320 -2.8512 16 8 1.3194 -3.1757 -2.9724 17 6 1.1231 -2.0060 -2.1692 18 1 -0.3633 0.0942 1.0234 19 1 -0.3633 0.8392 -0.5933 20 1 -0.3633 -0.9333 -0.4301 21 1 0.0274 3.0630 1.5390 22 1 1.6084 -2.0282 0.5146 23 1 3.1499 -1.1383 0.5143 24 1 2.6929 0.2705 -2.2521 25 1 4.2016 -0.4746 -1.6715 26 1 3.4754 -1.0134 -3.2047 27 1 4.2481 -2.9740 -1.4719 28 1 2.8308 -3.7299 -0.6664 29 1 2.7111 -4.7214 -2.8611 30 1 3.2854 -3.2257 -3.6584 31 1 0.3343 -2.1869 -1.4391 32 1 0.8540 -1.1621 -2.8045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687525872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = -29.475162 kcal Electronic energy + Delta-G solvation = -13655.878145 eV Core-core repulsion = 11424.106037 eV Total energy + Delta-G solvation = -2231.772108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41264 -35.78320 -33.05436 -30.80590 -29.05931 -26.69145 -26.12258 -24.96100 -22.17516 -21.11450 -18.78953 -16.66054 -15.95979 -15.40279 -14.79927 -14.35213 -13.51592 -13.50360 -13.17160 -12.84763 -12.26390 -11.95347 -11.77047 -11.17117 -11.04665 -10.86421 -10.74213 -10.60797 -10.35996 -10.14242 -9.90195 -9.82475 -9.63019 -9.06050 -8.51150 -6.70463 -5.70669 -3.15932 3.37998 3.46024 3.47444 4.29342 4.50875 4.90606 5.17390 5.32686 5.44683 5.50487 5.61110 5.78219 5.92648 5.99507 6.04580 6.17853 6.31601 6.37236 6.49255 6.64401 6.70634 6.79152 6.84482 7.04996 7.33509 7.42991 7.72918 7.83894 8.41724 9.25116 9.89809 10.39518 11.33878 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054811 B = 0.010403 C = 0.009680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.720150 B = 2690.805138 C = 2891.724626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.156 3.844 2 N -0.598 5.598 3 C -0.252 4.252 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.904 5.904 7 Si 0.898 3.102 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.166 3.834 12 C -0.112 4.112 13 C -0.126 4.126 14 C -0.149 4.149 15 C 0.054 3.946 16 O -0.396 6.396 17 C 0.066 3.934 18 H 0.030 0.970 19 H 0.037 0.963 20 H 0.004 0.996 21 H 0.251 0.749 22 H 0.037 0.963 23 H 0.050 0.950 24 H 0.080 0.920 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.001 -8.366 -5.276 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.320 5.320 3 C -0.381 4.381 4 H 0.089 0.911 5 C -0.198 4.198 6 N -0.549 5.549 7 Si 0.728 3.272 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.039 3.961 12 C -0.115 4.115 13 C -0.183 4.183 14 C -0.187 4.187 15 C -0.023 4.023 16 O -0.316 6.316 17 C -0.010 4.010 18 H 0.049 0.951 19 H 0.056 0.944 20 H 0.022 0.978 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.720 -8.302 -5.310 10.534 hybrid contribution 0.483 1.139 -0.040 1.238 sum 4.203 -7.163 -5.349 9.879 Atomic orbital electron populations 1.20887 0.82896 0.95559 0.99494 1.43868 1.01632 1.00620 1.85923 1.19234 0.98388 0.85328 1.35196 0.91130 1.25000 0.98371 0.98406 0.98010 1.70099 1.22134 1.27015 1.35624 0.86286 0.78385 0.84780 0.77724 1.20309 1.21687 1.21862 1.20667 0.96263 0.88560 0.90653 1.22870 0.94151 0.93927 1.00538 1.21741 0.99619 0.99639 0.97278 1.23313 1.00899 0.97121 0.97368 1.23264 0.83793 0.98583 0.96639 1.88328 1.28345 1.45493 1.69436 1.23326 0.97638 0.86715 0.93321 0.95125 0.94433 0.97752 0.93893 0.94497 0.93177 0.90128 0.93212 0.94714 0.90496 0.90805 0.90735 0.92879 0.91153 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.80 8.57 59.85 0.51 4.31 16 2 N -0.60 -14.62 2.61 -181.11 -0.47 -15.09 16 3 C -0.25 -6.72 8.07 -15.06 -0.12 -6.84 16 4 H 0.07 1.84 6.96 -52.48 -0.37 1.47 16 5 C 0.00 0.02 5.02 -17.43 -0.09 -0.07 16 6 N -0.90 -26.37 10.95 55.49 0.61 -25.76 16 7 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 8 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.17 3.37 4.71 -4.04 -0.02 3.35 16 12 C -0.11 -1.95 0.72 -152.56 -0.11 -2.06 16 13 C -0.13 -2.23 7.30 37.16 0.27 -1.96 16 14 C -0.15 -2.12 6.12 -24.48 -0.15 -2.27 16 15 C 0.05 0.76 7.48 38.19 0.29 1.04 16 16 O -0.40 -6.93 11.36 -35.23 -0.40 -7.33 16 17 C 0.07 1.19 6.13 37.88 0.23 1.43 16 18 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 19 H 0.04 0.98 7.45 -51.93 -0.39 0.59 16 20 H 0.00 0.09 5.60 -51.93 -0.29 -0.20 16 21 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 23 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 24 H 0.08 1.66 6.53 -51.93 -0.34 1.32 16 25 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.03 0.55 7.48 -51.93 -0.39 0.16 16 27 H 0.08 0.98 8.04 -51.93 -0.42 0.57 16 28 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.71 7.74 -51.93 -0.40 0.30 16 31 H 0.07 1.31 5.72 -51.93 -0.30 1.02 16 32 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 LS Contribution 249.35 15.07 3.76 3.76 Total: -1.00 -29.05 249.35 -5.63 -34.68 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.91 Total: -3.90 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 0.81 Total: -3.08 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.13 Total: -40.85 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.40 Total: -7.33 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.05 -5.63 -34.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687525872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.208 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds