Wall clock time and date at job start Mon Mar 30 2020 02:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00418 * 2 1 4 4 H 1.08004 * 120.00402 * 202.96524 * 3 2 1 5 5 C 1.38814 * 120.00018 * 22.95248 * 3 2 1 6 6 N 1.31624 * 119.99808 * 17.03574 * 5 3 2 7 7 Si 1.86796 * 120.00164 * 197.02590 * 5 3 2 8 8 H 1.48502 * 109.47234 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46995 * 120.00753 * 7 5 3 10 10 H 1.48505 * 109.47239 * 240.00449 * 7 5 3 11 11 C 1.46502 * 119.99706 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46865 * 90.00292 * 11 2 1 13 13 C 1.52996 * 110.75338 * 59.29843 * 12 11 2 14 14 C 1.55306 * 111.02117 * 182.89577 * 12 11 2 15 15 C 1.54953 * 100.94211 * 152.40347 * 14 12 11 16 16 O 1.43653 * 105.13394 * 323.55180 * 15 14 12 17 17 C 1.43241 * 109.97018 * 24.43166 * 16 15 14 18 18 H 1.09000 * 109.46836 * 275.26100 * 1 2 3 19 19 H 1.09003 * 109.46645 * 35.26018 * 1 2 3 20 20 H 1.08995 * 109.47053 * 155.25768 * 1 2 3 21 21 H 0.96991 * 119.99733 * 179.97438 * 6 5 3 22 22 H 1.09000 * 109.47439 * 330.00627 * 11 2 1 23 23 H 1.08999 * 109.47430 * 209.99978 * 11 2 1 24 24 H 1.09001 * 109.47396 * 297.22807 * 13 12 11 25 25 H 1.09001 * 109.47555 * 57.22669 * 13 12 11 26 26 H 1.09002 * 109.47471 * 177.23072 * 13 12 11 27 27 H 1.09003 * 111.12237 * 270.31683 * 14 12 11 28 28 H 1.08997 * 111.12682 * 34.48295 * 14 12 11 29 29 H 1.09000 * 110.31079 * 204.64009 * 15 14 12 30 30 H 1.09001 * 110.31202 * 82.46647 * 15 14 12 31 31 H 1.08999 * 109.82806 * 238.77294 * 17 16 15 32 32 H 1.09000 * 109.82926 * 117.80145 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1656 1.2229 -0.3649 5 6 1.5382 2.3404 0.4688 6 7 0.4545 2.2562 1.2111 7 14 2.2534 4.0136 0.0465 8 1 3.4643 3.8364 -0.7947 9 1 1.2451 4.8089 -0.6992 10 1 2.6189 4.7258 1.2973 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.2639 -0.6564 -2.1968 14 6 3.1644 -3.0907 -1.4838 15 6 2.6761 -3.6320 -2.8512 16 8 1.3194 -3.1757 -2.9724 17 6 1.1231 -2.0060 -2.1692 18 1 -0.3633 0.0942 1.0234 19 1 -0.3633 0.8392 -0.5933 20 1 -0.3633 -0.9333 -0.4301 21 1 0.0274 3.0630 1.5390 22 1 1.6084 -2.0282 0.5146 23 1 3.1499 -1.1383 0.5143 24 1 2.6929 0.2705 -2.2521 25 1 4.2016 -0.4746 -1.6715 26 1 3.4754 -1.0134 -3.2047 27 1 4.2481 -2.9740 -1.4719 28 1 2.8308 -3.7299 -0.6664 29 1 2.7111 -4.7214 -2.8611 30 1 3.2854 -3.2257 -3.6584 31 1 0.3343 -2.1869 -1.4391 32 1 0.8540 -1.1621 -2.8045 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687525872.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:53 Heat of formation + Delta-G solvation = -47.799126 kcal Electronic energy + Delta-G solvation = -13656.672732 eV Core-core repulsion = 11424.106037 eV Total energy + Delta-G solvation = -2232.566694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.77360 -37.54345 -34.70173 -32.66524 -30.36162 -28.42082 -27.86138 -26.70061 -23.58900 -22.79508 -20.23322 -18.67424 -17.27786 -16.74993 -16.73709 -15.73807 -15.35590 -15.22903 -14.64746 -14.42568 -13.83514 -13.63132 -13.22763 -12.90465 -12.76733 -12.53304 -12.39053 -12.23409 -12.06173 -11.79634 -11.65574 -11.39290 -11.26479 -10.58726 -10.38765 -8.72211 -7.79114 -5.25997 1.45147 1.47893 1.56990 2.52676 3.04061 3.33215 3.52449 3.82515 4.00404 4.03121 4.32269 4.41875 4.47893 4.73188 4.78791 4.86978 4.93731 4.96874 5.01343 5.06356 5.14184 5.28141 5.32643 5.35315 5.57874 5.68110 5.73147 6.13624 6.36620 7.18173 7.90886 8.35928 9.24043 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054811 B = 0.010403 C = 0.009680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.720150 B = 2690.805138 C = 2891.724626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.612 5.612 3 C -0.245 4.245 4 H 0.077 0.923 5 C -0.058 4.058 6 N -0.939 5.939 7 Si 0.958 3.042 8 H -0.264 1.264 9 H -0.296 1.296 10 H -0.295 1.295 11 C 0.165 3.835 12 C -0.109 4.109 13 C -0.119 4.119 14 C -0.138 4.138 15 C 0.049 3.951 16 O -0.411 6.411 17 C 0.072 3.928 18 H 0.003 0.997 19 H 0.010 0.990 20 H 0.034 0.966 21 H 0.245 0.755 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 -9.707 -6.188 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.334 5.334 3 C -0.376 4.376 4 H 0.094 0.906 5 C -0.253 4.253 6 N -0.587 5.587 7 Si 0.788 3.212 8 H -0.188 1.188 9 H -0.223 1.223 10 H -0.222 1.222 11 C 0.038 3.962 12 C -0.112 4.112 13 C -0.176 4.176 14 C -0.176 4.176 15 C -0.027 4.027 16 O -0.331 6.331 17 C -0.005 4.005 18 H 0.021 0.979 19 H 0.029 0.971 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.338 -9.680 -6.243 12.695 hybrid contribution 0.023 1.445 0.212 1.460 sum 5.360 -8.235 -6.031 11.529 Atomic orbital electron populations 1.20613 0.83278 0.95910 0.97473 1.44080 1.01734 1.01689 1.85925 1.19546 0.98493 0.86214 1.33312 0.90564 1.25727 0.99220 1.01628 0.98725 1.70250 1.23756 1.27273 1.37405 0.85325 0.77917 0.80806 0.77192 1.18838 1.22312 1.22245 1.20829 0.95749 0.86895 0.92682 1.22699 0.94525 0.95867 0.98093 1.21639 0.99160 0.98236 0.98609 1.23290 1.01832 0.94575 0.97939 1.23528 0.82181 1.00291 0.96721 1.88319 1.30534 1.44929 1.69295 1.23130 0.97705 0.86684 0.92938 0.97916 0.97120 0.94728 0.94559 0.93636 0.93241 0.93467 0.92745 0.92747 0.88401 0.89875 0.88027 0.91790 0.92069 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.51 8.57 127.77 1.10 9.60 16 2 N -0.61 -29.80 2.61 -726.92 -1.90 -31.69 16 3 C -0.25 -13.06 8.07 84.03 0.68 -12.38 16 4 H 0.08 3.91 6.96 -2.91 -0.02 3.89 16 5 C -0.06 -3.26 5.02 84.86 0.43 -2.83 16 6 N -0.94 -56.09 10.95 21.65 0.24 -55.86 16 7 Si 0.96 45.14 29.59 68.60 2.03 47.17 16 8 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 9 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 11 C 0.16 6.42 4.71 86.38 0.41 6.82 16 12 C -0.11 -3.57 0.72 -50.92 -0.04 -3.61 16 13 C -0.12 -3.99 7.30 71.98 0.53 -3.47 16 14 C -0.14 -3.40 6.12 32.05 0.20 -3.21 16 15 C 0.05 1.17 7.48 72.65 0.54 1.72 16 16 O -0.41 -13.31 11.36 -148.98 -1.69 -15.01 16 17 C 0.07 2.49 6.13 72.45 0.44 2.93 16 18 H 0.00 0.14 7.33 -2.39 -0.02 0.12 16 19 H 0.01 0.55 7.45 -2.39 -0.02 0.53 16 20 H 0.03 1.46 5.60 -2.39 -0.01 1.45 16 21 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 22 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 23 H 0.05 1.93 8.04 -2.39 -0.02 1.91 16 24 H 0.05 1.89 6.53 -2.39 -0.02 1.88 16 25 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 26 H 0.05 1.58 7.48 -2.39 -0.02 1.57 16 27 H 0.10 2.04 8.04 -2.39 -0.02 2.02 16 28 H 0.08 1.92 8.05 -2.39 -0.02 1.91 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.43 7.74 -2.39 -0.02 1.41 16 31 H 0.06 2.21 5.72 -2.39 -0.01 2.20 16 32 H 0.05 1.83 7.84 -2.39 -0.02 1.81 16 Total: -1.00 -61.94 249.35 4.04 -57.90 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: 1.08 Total: 1.90 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 4.28 Total: -4.41 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -1.66 Total: -87.55 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.69 Total: -15.01 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -61.94 4.04 -57.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687525872.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.101 kcal (2) G-P(sol) polarization free energy of solvation -61.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds