Wall clock time and date at job start Mon Mar 30 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36945 * 120.00098 * 2 1 4 4 H 1.07999 * 120.00279 * 203.21547 * 3 2 1 5 5 C 1.38818 * 119.99540 * 23.21173 * 3 2 1 6 6 N 1.31617 * 120.00294 * 11.62972 * 5 3 2 7 7 Si 1.86803 * 119.99593 * 191.62658 * 5 3 2 8 8 H 1.48500 * 109.46950 * 90.00269 * 7 5 3 9 9 H 1.48499 * 109.47188 * 209.99949 * 7 5 3 10 10 H 1.48499 * 109.47264 * 330.00219 * 7 5 3 11 11 C 1.46501 * 120.00322 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.47036 * 270.00112 * 11 2 1 13 13 C 1.52996 * 110.75181 * 297.98150 * 12 11 2 14 14 C 1.55562 * 110.83525 * 174.30459 * 12 11 2 15 15 C 1.54954 * 100.82440 * 207.68743 * 14 12 11 16 16 O 1.43646 * 105.22416 * 36.44045 * 15 14 12 17 17 C 1.43233 * 109.97091 * 335.52423 * 16 15 14 18 18 H 1.08998 * 109.46983 * 274.35630 * 1 2 3 19 19 H 1.09002 * 109.46851 * 34.34846 * 1 2 3 20 20 H 1.08991 * 109.46915 * 154.35001 * 1 2 3 21 21 H 0.97001 * 119.99874 * 179.97438 * 6 5 3 22 22 H 1.08997 * 109.47168 * 149.99893 * 11 2 1 23 23 H 1.08997 * 109.46708 * 30.00170 * 11 2 1 24 24 H 1.09003 * 109.47114 * 182.77492 * 13 12 11 25 25 H 1.09006 * 109.47170 * 302.76770 * 13 12 11 26 26 H 1.09001 * 109.47231 * 62.77373 * 13 12 11 27 27 H 1.08993 * 111.22652 * 89.79109 * 14 12 11 28 28 H 1.09003 * 111.13544 * 325.54027 * 14 12 11 29 29 H 1.09004 * 110.30622 * 277.47532 * 15 14 12 30 30 H 1.08998 * 110.30952 * 155.40841 * 15 14 12 31 31 H 1.09007 * 109.83308 * 121.21966 * 17 16 15 32 32 H 1.09004 * 109.83442 * 242.19755 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1860 0.0000 4 1 3.1642 1.2239 -0.3687 5 6 1.5399 2.3395 0.4738 6 7 0.4015 2.2602 1.1296 7 14 2.3350 4.0042 0.1807 8 1 1.8431 4.5688 -1.1016 9 1 1.9840 4.9232 1.2931 10 1 3.8100 3.8441 0.1177 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4433 13 6 3.3206 -0.6860 2.1777 14 6 3.1019 -3.1228 1.4833 15 6 2.6071 -3.6314 2.8608 16 8 1.2750 -3.1120 2.9985 17 6 1.1215 -1.9388 2.1912 18 1 -0.3633 0.0781 1.0247 19 1 -0.3633 0.8485 -0.5799 20 1 -0.3633 -0.9263 -0.4448 21 1 -0.0245 3.0662 1.4610 22 1 3.1500 -1.1386 -0.5133 23 1 1.6085 -2.0285 -0.5130 24 1 3.5300 -1.0437 3.1858 25 1 4.2581 -0.5509 1.6382 26 1 2.7923 0.2659 2.2323 27 1 4.1896 -3.0582 1.4560 28 1 2.7270 -3.7506 0.6750 29 1 3.2463 -3.2495 3.6570 30 1 2.5920 -4.7211 2.8786 31 1 0.3148 -2.0868 1.4732 32 1 0.9010 -1.0799 2.8251 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687525873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:55 Heat of formation + Delta-G solvation = -48.531108 kcal Electronic energy + Delta-G solvation = -13764.700606 eV Core-core repulsion = 11532.102170 eV Total energy + Delta-G solvation = -2232.598435 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.72991 -37.52765 -34.65028 -32.66369 -30.36441 -28.29765 -27.80181 -26.72924 -23.58942 -22.75546 -20.19957 -18.65648 -17.23095 -16.90239 -16.57229 -15.72557 -15.35597 -15.24381 -14.50664 -14.37388 -13.83433 -13.58025 -13.11013 -12.98865 -12.82823 -12.46026 -12.30788 -12.25329 -12.02596 -11.84216 -11.54601 -11.42500 -11.28172 -10.56327 -10.39986 -8.72065 -7.76861 -5.23657 1.46945 1.48387 1.55908 2.53792 3.06071 3.36831 3.54716 3.86478 4.03188 4.06813 4.34019 4.43748 4.51520 4.80244 4.82918 4.87224 4.92286 4.94870 5.03513 5.08303 5.17596 5.29439 5.33976 5.40458 5.67787 5.68592 5.76302 6.15769 6.38535 7.20865 7.92387 8.37008 9.26567 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.052267 B = 0.010984 C = 0.010525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.584787 B = 2548.466595 C = 2659.625361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.613 5.613 3 C -0.241 4.241 4 H 0.070 0.930 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.958 3.042 8 H -0.290 1.290 9 H -0.300 1.300 10 H -0.268 1.268 11 C 0.163 3.837 12 C -0.109 4.109 13 C -0.114 4.114 14 C -0.137 4.137 15 C 0.046 3.954 16 O -0.413 6.413 17 C 0.080 3.920 18 H 0.006 0.994 19 H 0.014 0.986 20 H 0.024 0.976 21 H 0.244 0.756 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.056 0.944 26 H 0.041 0.959 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -9.828 0.084 11.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.335 5.335 3 C -0.372 4.372 4 H 0.088 0.912 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.788 3.212 8 H -0.217 1.217 9 H -0.227 1.227 10 H -0.193 1.193 11 C 0.037 3.963 12 C -0.112 4.112 13 C -0.172 4.172 14 C -0.175 4.175 15 C -0.030 4.030 16 O -0.334 6.334 17 C 0.004 3.996 18 H 0.024 0.976 19 H 0.033 0.967 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.076 0.924 32 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.449 -9.783 0.252 11.201 hybrid contribution 0.068 1.517 0.045 1.519 sum 5.516 -8.266 0.297 9.942 Atomic orbital electron populations 1.20569 0.83098 0.95540 0.97612 1.44138 1.01850 1.01698 1.85832 1.19378 0.98261 0.86326 1.33193 0.91223 1.25665 0.98588 1.01345 0.99073 1.70217 1.20055 1.27154 1.41079 0.85394 0.78583 0.80776 0.76493 1.21728 1.22710 1.19280 1.20979 0.96048 0.86854 0.92418 1.22763 0.94027 0.95606 0.98798 1.21528 0.98829 0.98585 0.98209 1.23349 1.02131 0.94314 0.97661 1.23539 0.82832 0.99727 0.96865 1.88309 1.32589 1.43616 1.68846 1.22945 0.98069 0.86016 0.92592 0.97566 0.96694 0.95709 0.94641 0.92627 0.92602 0.93730 0.92537 0.93984 0.88284 0.89394 0.92308 0.87809 0.92406 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.70 7.44 127.77 0.95 9.65 16 2 N -0.61 -29.60 2.64 -726.94 -1.92 -31.52 16 3 C -0.24 -12.72 7.73 84.03 0.65 -12.07 16 4 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16 5 C -0.05 -2.87 5.12 84.86 0.43 -2.43 16 6 N -0.94 -55.15 10.65 21.65 0.23 -54.92 16 7 Si 0.96 44.93 29.57 68.60 2.03 46.96 16 8 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 9 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.16 6.27 4.73 86.38 0.41 6.68 16 12 C -0.11 -3.86 0.72 -50.83 -0.04 -3.90 16 13 C -0.11 -4.34 7.85 71.98 0.56 -3.78 16 14 C -0.14 -3.54 6.14 32.15 0.20 -3.35 16 15 C 0.05 1.24 7.48 72.65 0.54 1.78 16 16 O -0.41 -14.98 11.36 -148.98 -1.69 -16.67 16 17 C 0.08 3.17 5.93 72.45 0.43 3.60 16 18 H 0.01 0.33 6.96 -2.39 -0.02 0.31 16 19 H 0.01 0.78 7.27 -2.39 -0.02 0.76 16 20 H 0.02 1.04 7.80 -2.39 -0.02 1.03 16 21 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 22 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 23 H 0.06 1.95 7.85 -2.39 -0.02 1.93 16 24 H 0.04 1.53 7.51 -2.39 -0.02 1.51 16 25 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.04 2.00 6.66 -2.39 -0.02 1.98 16 27 H 0.10 2.16 8.04 -2.39 -0.02 2.14 16 28 H 0.09 2.05 8.03 -2.39 -0.02 2.03 16 29 H 0.06 1.51 7.76 -2.38 -0.02 1.49 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 2.35 6.65 -2.38 -0.02 2.33 16 32 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16 Total: -1.00 -61.38 251.51 3.87 -57.51 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.07 Total: 2.45 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 4.14 Total: -3.81 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -1.69 Total: -86.44 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -1.69 Total: -16.67 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -61.38 3.87 -57.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687525873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.982 kcal (2) G-P(sol) polarization free energy of solvation -61.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds