Wall clock time and date at job start Mon Mar 30 2020 02:05:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36945 * 120.00098 * 2 1
4 4 H 1.07999 * 120.00279 * 203.21547 * 3 2 1
5 5 C 1.38818 * 119.99540 * 23.21173 * 3 2 1
6 6 N 1.31617 * 120.00294 * 11.62972 * 5 3 2
7 7 Si 1.86803 * 119.99593 * 191.62658 * 5 3 2
8 8 H 1.48500 * 109.46950 * 90.00269 * 7 5 3
9 9 H 1.48499 * 109.47188 * 209.99949 * 7 5 3
10 10 H 1.48499 * 109.47264 * 330.00219 * 7 5 3
11 11 C 1.46501 * 120.00322 * 179.97438 * 2 1 3
12 12 C 1.52999 * 109.47036 * 270.00112 * 11 2 1
13 13 C 1.52996 * 110.75181 * 297.98150 * 12 11 2
14 14 C 1.55562 * 110.83525 * 174.30459 * 12 11 2
15 15 C 1.54954 * 100.82440 * 207.68743 * 14 12 11
16 16 O 1.43646 * 105.22416 * 36.44045 * 15 14 12
17 17 C 1.43233 * 109.97091 * 335.52423 * 16 15 14
18 18 H 1.08998 * 109.46983 * 274.35630 * 1 2 3
19 19 H 1.09002 * 109.46851 * 34.34846 * 1 2 3
20 20 H 1.08991 * 109.46915 * 154.35001 * 1 2 3
21 21 H 0.97001 * 119.99874 * 179.97438 * 6 5 3
22 22 H 1.08997 * 109.47168 * 149.99893 * 11 2 1
23 23 H 1.08997 * 109.46708 * 30.00170 * 11 2 1
24 24 H 1.09003 * 109.47114 * 182.77492 * 13 12 11
25 25 H 1.09006 * 109.47170 * 302.76770 * 13 12 11
26 26 H 1.09001 * 109.47231 * 62.77373 * 13 12 11
27 27 H 1.08993 * 111.22652 * 89.79109 * 14 12 11
28 28 H 1.09003 * 111.13544 * 325.54027 * 14 12 11
29 29 H 1.09004 * 110.30622 * 277.47532 * 15 14 12
30 30 H 1.08998 * 110.30952 * 155.40841 * 15 14 12
31 31 H 1.09007 * 109.83308 * 121.21966 * 17 16 15
32 32 H 1.09004 * 109.83442 * 242.19755 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1498 1.1860 0.0000
4 1 3.1642 1.2239 -0.3687
5 6 1.5399 2.3395 0.4738
6 7 0.4015 2.2602 1.1296
7 14 2.3350 4.0042 0.1807
8 1 1.8431 4.5688 -1.1016
9 1 1.9840 4.9232 1.2931
10 1 3.8100 3.8441 0.1177
11 6 2.1976 -1.2687 0.0006
12 6 2.4526 -1.7097 1.4433
13 6 3.3206 -0.6860 2.1777
14 6 3.1019 -3.1228 1.4833
15 6 2.6071 -3.6314 2.8608
16 8 1.2750 -3.1120 2.9985
17 6 1.1215 -1.9388 2.1912
18 1 -0.3633 0.0781 1.0247
19 1 -0.3633 0.8485 -0.5799
20 1 -0.3633 -0.9263 -0.4448
21 1 -0.0245 3.0662 1.4610
22 1 3.1500 -1.1386 -0.5133
23 1 1.6085 -2.0285 -0.5130
24 1 3.5300 -1.0437 3.1858
25 1 4.2581 -0.5509 1.6382
26 1 2.7923 0.2659 2.2323
27 1 4.1896 -3.0582 1.4560
28 1 2.7270 -3.7506 0.6750
29 1 3.2463 -3.2495 3.6570
30 1 2.5920 -4.7211 2.8786
31 1 0.3148 -2.0868 1.4732
32 1 0.9010 -1.0799 2.8251
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000687525873.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:05:55
Heat of formation + Delta-G solvation = -48.531108 kcal
Electronic energy + Delta-G solvation = -13764.700606 eV
Core-core repulsion = 11532.102170 eV
Total energy + Delta-G solvation = -2232.598435 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.72991 -37.52765 -34.65028 -32.66369 -30.36441 -28.29765 -27.80181 -26.72924
-23.58942 -22.75546 -20.19957 -18.65648 -17.23095 -16.90239 -16.57229 -15.72557
-15.35597 -15.24381 -14.50664 -14.37388 -13.83433 -13.58025 -13.11013 -12.98865
-12.82823 -12.46026 -12.30788 -12.25329 -12.02596 -11.84216 -11.54601 -11.42500
-11.28172 -10.56327 -10.39986 -8.72065 -7.76861 -5.23657 1.46945 1.48387
1.55908 2.53792 3.06071 3.36831 3.54716 3.86478 4.03188 4.06813
4.34019 4.43748 4.51520 4.80244 4.82918 4.87224 4.92286 4.94870
5.03513 5.08303 5.17596 5.29439 5.33976 5.40458 5.67787 5.68592
5.76302 6.15769 6.38535 7.20865 7.92387 8.37008 9.26567
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.052267 B = 0.010984 C = 0.010525
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 535.584787 B = 2548.466595 C = 2659.625361
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.177 3.823
2 N -0.613 5.613
3 C -0.241 4.241
4 H 0.070 0.930
5 C -0.052 4.052
6 N -0.938 5.938
7 Si 0.958 3.042
8 H -0.290 1.290
9 H -0.300 1.300
10 H -0.268 1.268
11 C 0.163 3.837
12 C -0.109 4.109
13 C -0.114 4.114
14 C -0.137 4.137
15 C 0.046 3.954
16 O -0.413 6.413
17 C 0.080 3.920
18 H 0.006 0.994
19 H 0.014 0.986
20 H 0.024 0.976
21 H 0.244 0.756
22 H 0.055 0.945
23 H 0.056 0.944
24 H 0.044 0.956
25 H 0.056 0.944
26 H 0.041 0.959
27 H 0.099 0.901
28 H 0.087 0.913
29 H 0.059 0.941
30 H 0.104 0.896
31 H 0.058 0.942
32 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.701 -9.828 0.084 11.362
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 N -0.335 5.335
3 C -0.372 4.372
4 H 0.088 0.912
5 C -0.247 4.247
6 N -0.585 5.585
7 Si 0.788 3.212
8 H -0.217 1.217
9 H -0.227 1.227
10 H -0.193 1.193
11 C 0.037 3.963
12 C -0.112 4.112
13 C -0.172 4.172
14 C -0.175 4.175
15 C -0.030 4.030
16 O -0.334 6.334
17 C 0.004 3.996
18 H 0.024 0.976
19 H 0.033 0.967
20 H 0.043 0.957
21 H 0.054 0.946
22 H 0.074 0.926
23 H 0.074 0.926
24 H 0.063 0.937
25 H 0.075 0.925
26 H 0.060 0.940
27 H 0.117 0.883
28 H 0.106 0.894
29 H 0.077 0.923
30 H 0.122 0.878
31 H 0.076 0.924
32 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges 5.449 -9.783 0.252 11.201
hybrid contribution 0.068 1.517 0.045 1.519
sum 5.516 -8.266 0.297 9.942
Atomic orbital electron populations
1.20569 0.83098 0.95540 0.97612 1.44138 1.01850 1.01698 1.85832
1.19378 0.98261 0.86326 1.33193 0.91223 1.25665 0.98588 1.01345
0.99073 1.70217 1.20055 1.27154 1.41079 0.85394 0.78583 0.80776
0.76493 1.21728 1.22710 1.19280 1.20979 0.96048 0.86854 0.92418
1.22763 0.94027 0.95606 0.98798 1.21528 0.98829 0.98585 0.98209
1.23349 1.02131 0.94314 0.97661 1.23539 0.82832 0.99727 0.96865
1.88309 1.32589 1.43616 1.68846 1.22945 0.98069 0.86016 0.92592
0.97566 0.96694 0.95709 0.94641 0.92627 0.92602 0.93730 0.92537
0.93984 0.88284 0.89394 0.92308 0.87809 0.92406 0.94810
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.70 7.44 127.77 0.95 9.65 16
2 N -0.61 -29.60 2.64 -726.94 -1.92 -31.52 16
3 C -0.24 -12.72 7.73 84.03 0.65 -12.07 16
4 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16
5 C -0.05 -2.87 5.12 84.86 0.43 -2.43 16
6 N -0.94 -55.15 10.65 21.65 0.23 -54.92 16
7 Si 0.96 44.93 29.57 68.60 2.03 46.96 16
8 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16
9 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16
10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16
11 C 0.16 6.27 4.73 86.38 0.41 6.68 16
12 C -0.11 -3.86 0.72 -50.83 -0.04 -3.90 16
13 C -0.11 -4.34 7.85 71.98 0.56 -3.78 16
14 C -0.14 -3.54 6.14 32.15 0.20 -3.35 16
15 C 0.05 1.24 7.48 72.65 0.54 1.78 16
16 O -0.41 -14.98 11.36 -148.98 -1.69 -16.67 16
17 C 0.08 3.17 5.93 72.45 0.43 3.60 16
18 H 0.01 0.33 6.96 -2.39 -0.02 0.31 16
19 H 0.01 0.78 7.27 -2.39 -0.02 0.76 16
20 H 0.02 1.04 7.80 -2.39 -0.02 1.03 16
21 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16
22 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16
23 H 0.06 1.95 7.85 -2.39 -0.02 1.93 16
24 H 0.04 1.53 7.51 -2.39 -0.02 1.51 16
25 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16
26 H 0.04 2.00 6.66 -2.39 -0.02 1.98 16
27 H 0.10 2.16 8.04 -2.39 -0.02 2.14 16
28 H 0.09 2.05 8.03 -2.39 -0.02 2.03 16
29 H 0.06 1.51 7.76 -2.38 -0.02 1.49 16
30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16
31 H 0.06 2.35 6.65 -2.38 -0.02 2.33 16
32 H 0.03 1.57 7.84 -2.39 -0.02 1.55 16
Total: -1.00 -61.38 251.51 3.87 -57.51
By element:
Atomic # 1 Polarization: 1.38 SS G_CDS: 1.07 Total: 2.45 kcal
Atomic # 6 Polarization: -7.95 SS G_CDS: 4.14 Total: -3.81 kcal
Atomic # 7 Polarization: -84.75 SS G_CDS: -1.69 Total: -86.44 kcal
Atomic # 8 Polarization: -14.98 SS G_CDS: -1.69 Total: -16.67 kcal
Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal
Total: -61.38 3.87 -57.51 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687525873.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.982 kcal
(2) G-P(sol) polarization free energy of solvation -61.379 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.513 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds