Wall clock time and date at job start Mon Mar 30 2020 02:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53002 * 109.47293 * 240.00170 * 2 1 3 5 5 O 1.42904 * 109.47418 * 120.00175 * 2 1 3 6 6 C 1.42899 * 113.99952 * 59.99993 * 5 2 1 7 7 C 1.53496 * 114.20673 * 210.00074 * 6 5 2 8 8 N 1.47062 * 87.98485 * 220.14963 * 7 6 5 9 9 C 1.36939 * 136.05593 * 207.08750 * 8 7 6 10 10 H 1.08008 * 119.99868 * 7.82597 * 9 8 7 11 11 C 1.38808 * 120.00203 * 187.82575 * 9 8 7 12 12 N 1.31618 * 119.99998 * 195.17052 * 11 9 8 13 13 Si 1.86797 * 119.99840 * 15.16580 * 11 9 8 14 14 H 1.48503 * 109.47450 * 270.00422 * 13 11 9 15 15 H 1.48503 * 109.47360 * 30.00092 * 13 11 9 16 16 H 1.48498 * 109.47360 * 150.00270 * 13 11 9 17 17 C 1.47059 * 87.88616 * 27.34176 * 8 7 6 18 18 H 1.08995 * 109.46972 * 299.99453 * 1 2 3 19 19 H 1.08994 * 109.46949 * 59.99819 * 1 2 3 20 20 H 1.08996 * 109.46987 * 180.02562 * 1 2 3 21 21 H 1.09008 * 109.47342 * 180.02562 * 3 2 1 22 22 H 1.08994 * 109.47421 * 299.99891 * 3 2 1 23 23 H 1.09006 * 109.47125 * 60.00083 * 3 2 1 24 24 H 1.08996 * 109.46915 * 299.99813 * 4 2 1 25 25 H 1.09000 * 109.46745 * 59.99510 * 4 2 1 26 26 H 1.08994 * 109.47134 * 179.97438 * 4 2 1 27 27 H 1.09001 * 113.27880 * 343.07049 * 6 5 2 28 28 H 1.09008 * 113.46447 * 105.36397 * 7 6 5 29 29 H 1.08996 * 113.51824 * 334.94207 * 7 6 5 30 30 H 0.96995 * 120.00365 * 354.90363 * 12 11 9 31 31 H 1.08997 * 113.47135 * 87.43718 * 17 8 7 32 32 H 1.09007 * 113.47198 * 217.88025 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.5848 -2.0356 1.2644 7 6 1.4293 -2.5445 2.7042 8 7 2.0275 -3.8141 2.2649 9 6 1.9614 -5.1238 2.6592 10 1 1.2477 -5.4259 3.4115 11 6 2.8117 -6.0632 2.0922 12 7 2.5627 -7.3476 2.2356 13 14 4.3091 -5.5043 1.1255 14 1 3.9423 -5.3391 -0.3040 15 1 4.7915 -4.2077 1.6656 16 1 5.3843 -6.5215 1.2462 17 6 2.7329 -3.0572 1.2198 18 1 -0.3633 0.5137 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 3.1300 1.4426 -0.0005 22 1 1.6767 1.9563 -0.8899 23 1 1.6766 1.9563 0.8900 24 1 1.6768 -1.7488 -1.2493 25 1 1.6766 -0.2074 -2.1392 26 1 3.1300 -0.7208 -1.2495 27 1 0.7443 -2.2741 0.6128 28 1 0.3906 -2.6406 3.0208 29 1 2.0412 -2.0029 3.4255 30 1 1.8285 -7.6395 2.7983 31 1 3.6890 -2.6503 1.5489 32 1 2.8050 -3.5901 0.2716 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687798699.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:46 Heat of formation + Delta-G solvation = -14.429854 kcal Electronic energy + Delta-G solvation = -13363.402949 eV Core-core repulsion = 11132.283255 eV Total energy + Delta-G solvation = -2231.119694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.83120 -38.58697 -34.75609 -33.74680 -29.77175 -28.28382 -28.23453 -26.88307 -24.47044 -21.56332 -20.80511 -19.55284 -17.78414 -17.31196 -16.27249 -15.92128 -15.47054 -15.32991 -14.83224 -14.14330 -13.73628 -13.59475 -13.26511 -12.98270 -12.85367 -12.68396 -12.59334 -12.56667 -12.42178 -11.87874 -11.58788 -11.33753 -11.30252 -10.90352 -10.24342 -9.30665 -8.67384 -5.52321 1.36976 1.48935 1.64771 2.49198 2.58530 3.09602 3.17713 3.56315 3.94239 3.99261 4.04446 4.17296 4.51453 4.60226 4.65114 4.68512 4.70345 4.72477 4.84105 4.86958 4.99330 5.00384 5.13075 5.16375 5.26534 5.40615 5.45596 5.90644 6.43413 6.65217 7.27361 8.22725 8.84630 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.054118 B = 0.009928 C = 0.009145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.264951 B = 2819.687779 C = 3060.961228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 C -0.132 4.132 4 C -0.178 4.178 5 O -0.375 6.375 6 C 0.078 3.922 7 C 0.113 3.887 8 N -0.651 5.651 9 C -0.295 4.295 10 H 0.054 0.946 11 C -0.079 4.079 12 N -0.964 5.964 13 Si 1.099 2.901 14 H -0.274 1.274 15 H -0.261 1.261 16 H -0.298 1.298 17 C 0.082 3.918 18 H 0.063 0.937 19 H 0.088 0.912 20 H 0.050 0.950 21 H 0.058 0.942 22 H 0.093 0.907 23 H 0.061 0.939 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.248 0.752 31 H 0.052 0.948 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 18.648 -7.758 20.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.052 3.948 3 C -0.189 4.189 4 C -0.235 4.235 5 O -0.293 6.293 6 C 0.018 3.982 7 C -0.012 4.012 8 N -0.381 5.381 9 C -0.422 4.422 10 H 0.072 0.928 11 C -0.272 4.272 12 N -0.609 5.609 13 Si 0.924 3.076 14 H -0.200 1.200 15 H -0.186 1.186 16 H -0.225 1.225 17 C -0.044 4.044 18 H 0.082 0.918 19 H 0.107 0.893 20 H 0.069 0.931 21 H 0.077 0.923 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.782 18.000 -8.439 19.895 hybrid contribution -1.495 -0.339 1.359 2.049 sum -2.278 17.661 -7.079 19.163 Atomic orbital electron populations 1.22439 0.94778 1.02340 1.03684 1.21881 0.94105 0.93909 0.84930 1.21759 1.01679 0.92031 1.03421 1.22488 1.02024 1.00587 0.98419 1.87967 1.74298 1.22867 1.44210 1.23830 0.96254 0.80814 0.97267 1.22729 0.97776 0.85107 0.95618 1.45930 1.54244 1.01628 1.36309 1.19996 1.17097 0.82163 1.22975 0.92801 1.27051 1.04298 0.92936 1.02898 1.71007 1.34281 1.14859 1.40706 0.83324 0.73462 0.75070 0.75700 1.20042 1.18585 1.22521 1.23347 0.96900 0.91835 0.92278 0.91770 0.89348 0.93111 0.92294 0.88818 0.91943 0.93476 0.89275 0.92234 0.87594 0.92675 0.93325 0.94240 0.93059 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 8.38 71.98 0.60 -2.92 16 2 C 0.09 2.09 1.11 -10.79 -0.01 2.08 16 3 C -0.13 -2.36 8.84 71.98 0.64 -1.73 16 4 C -0.18 -3.93 8.38 71.98 0.60 -3.32 16 5 O -0.37 -11.78 10.04 -148.98 -1.50 -13.27 16 6 C 0.08 2.77 3.19 31.01 0.10 2.87 16 7 C 0.11 4.69 8.52 83.17 0.71 5.40 16 8 N -0.65 -33.36 3.62 -738.64 -2.68 -36.03 16 9 C -0.30 -17.83 11.03 84.03 0.93 -16.90 16 10 H 0.05 3.47 8.06 -2.91 -0.02 3.45 16 11 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 12 N -0.96 -63.34 13.70 21.65 0.30 -63.05 16 13 Si 1.10 55.06 25.50 68.60 1.75 56.81 16 14 H -0.27 -12.76 6.97 99.48 0.69 -12.06 16 15 H -0.26 -12.08 5.66 99.48 0.56 -11.52 16 16 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 17 C 0.08 3.54 5.46 83.26 0.45 3.99 16 18 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 19 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 20 H 0.05 1.14 6.28 -2.39 -0.01 1.12 16 21 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.05 1.18 6.98 -2.39 -0.02 1.17 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.11 3.56 5.55 -2.39 -0.01 3.55 16 28 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 31 H 0.05 2.24 7.02 -2.39 -0.02 2.22 16 32 H 0.05 2.09 6.22 -2.38 -0.01 2.08 16 Total: -1.00 -69.65 255.14 3.24 -66.41 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 0.88 Total: 4.08 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 4.49 Total: -14.93 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -2.38 Total: -99.08 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -1.50 Total: -13.27 kcal Atomic # 14 Polarization: 55.06 SS G_CDS: 1.75 Total: 56.81 kcal Total: -69.65 3.24 -66.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687798699.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.976 kcal (2) G-P(sol) polarization free energy of solvation -69.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds