Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 H 1.09000 * 110.56696 * 307.67738 * 3 2 1 5 5 C 1.54479 * 110.51133 * 70.36196 * 3 2 1 6 6 O 1.44424 * 104.80660 * 142.62115 * 5 3 2 7 7 C 1.44420 * 105.27622 * 319.48831 * 6 5 3 8 8 C 1.54482 * 104.80309 * 40.50809 * 7 6 5 9 9 H 1.09006 * 110.51201 * 217.23924 * 8 7 6 10 10 N 1.46498 * 110.51188 * 94.66970 * 8 7 6 11 11 C 1.46501 * 119.99928 * 301.17898 * 10 8 7 12 12 C 1.36935 * 120.00425 * 121.45089 * 10 8 7 13 13 H 1.08000 * 119.99694 * 20.41309 * 12 10 8 14 14 C 1.38809 * 120.00312 * 200.40750 * 12 10 8 15 15 N 1.31614 * 119.99934 * 14.85189 * 14 12 10 16 16 Si 1.86800 * 119.99948 * 194.85075 * 14 12 10 17 17 H 1.48503 * 109.47099 * 85.00764 * 16 14 12 18 18 H 1.48502 * 109.47135 * 205.00261 * 16 14 12 19 19 H 1.48494 * 109.47238 * 325.00553 * 16 14 12 20 20 H 1.08997 * 109.46975 * 59.99928 * 1 2 3 21 21 H 1.09002 * 109.47299 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47174 * 299.99961 * 1 2 3 23 23 H 1.08999 * 109.46906 * 239.99651 * 2 1 3 24 24 H 1.09002 * 109.47156 * 120.00525 * 2 1 3 25 25 H 1.08998 * 110.37052 * 23.78782 * 5 3 2 26 26 H 1.08997 * 110.37102 * 261.45151 * 5 3 2 27 27 H 1.09004 * 110.37501 * 281.68004 * 7 6 5 28 28 H 1.08997 * 110.46965 * 159.38845 * 7 6 5 29 29 H 1.09004 * 109.47354 * 95.10326 * 11 10 8 30 30 H 1.08994 * 109.47329 * 215.10358 * 11 10 8 31 31 H 1.09001 * 109.47339 * 335.10905 * 11 10 8 32 32 H 0.97007 * 119.99874 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5795 2.0114 -0.8077 5 6 1.7620 2.1149 1.3627 6 8 2.9178 2.9456 1.6070 7 6 4.0497 2.1593 1.1753 8 6 3.5796 1.4723 -0.1261 9 1 3.9795 0.4602 -0.1897 10 7 3.9838 2.2568 -1.2955 11 6 3.5328 3.6432 -1.4389 12 6 4.7784 1.6924 -2.2573 13 1 4.8407 0.6177 -2.3440 14 6 5.5039 2.5015 -3.1209 15 7 5.6666 3.7783 -2.8458 16 14 6.2492 1.7783 -4.6737 17 1 5.2329 1.7772 -5.7565 18 1 7.4158 2.5971 -5.0906 19 1 6.6913 0.3858 -4.4083 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6639 1.3617 2.1445 26 1 0.8607 2.7254 1.3077 27 1 4.3026 1.4128 1.9283 28 1 4.9070 2.8023 0.9766 29 1 4.2972 4.3161 -1.0502 30 1 3.3584 3.8615 -2.4924 31 1 2.6072 3.7839 -0.8807 32 1 6.1739 4.3436 -3.4492 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688202130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = -31.574080 kcal Electronic energy + Delta-G solvation = -13577.463455 eV Core-core repulsion = 11345.600332 eV Total energy + Delta-G solvation = -2231.863124 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.13292 -34.94463 -33.99420 -31.22795 -28.45366 -27.61555 -25.84809 -23.41316 -22.93622 -20.57744 -19.10113 -16.76827 -15.81332 -15.03613 -15.01294 -14.54499 -13.80218 -13.31288 -13.24395 -12.72590 -12.19949 -11.85600 -11.62233 -11.42938 -11.01807 -10.80623 -10.51053 -10.42316 -10.33591 -10.15715 -10.10568 -9.86856 -9.71960 -9.16308 -8.49309 -6.73256 -5.69604 -3.14081 3.39583 3.45566 3.46831 4.49985 4.61121 5.15231 5.21069 5.35919 5.46635 5.54184 5.65911 5.69254 5.79468 5.96077 6.08112 6.13749 6.20036 6.25515 6.35030 6.49481 6.53173 6.78331 6.85640 6.98227 7.43557 7.49722 7.79890 7.87401 8.41175 9.26128 9.90173 10.39594 11.34879 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042334 B = 0.011061 C = 0.009639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.247541 B = 2530.704750 C = 2904.089049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.142 4.142 4 H 0.086 0.914 5 C 0.052 3.948 6 O -0.379 6.379 7 C 0.024 3.976 8 C 0.154 3.846 9 H 0.075 0.925 10 N -0.589 5.589 11 C 0.166 3.834 12 C -0.258 4.258 13 H 0.068 0.932 14 C 0.002 3.998 15 N -0.905 5.905 16 Si 0.904 3.096 17 H -0.288 1.288 18 H -0.291 1.291 19 H -0.280 1.280 20 H 0.053 0.947 21 H 0.048 0.952 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.005 0.995 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 -5.397 5.937 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.162 4.162 4 H 0.105 0.895 5 C -0.026 4.026 6 O -0.298 6.298 7 C -0.054 4.054 8 C 0.044 3.956 9 H 0.093 0.907 10 N -0.310 5.310 11 C 0.021 3.979 12 C -0.387 4.387 13 H 0.086 0.914 14 C -0.197 4.197 15 N -0.549 5.549 16 Si 0.735 3.265 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.206 1.206 20 H 0.072 0.928 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.364 -5.027 5.901 10.692 hybrid contribution 0.474 -0.481 -0.948 1.164 sum -6.889 -5.508 4.952 10.115 Atomic orbital electron populations 1.21791 0.96409 1.00947 1.01614 1.21485 0.95213 0.96229 1.01797 1.23153 0.99312 0.95942 0.97830 0.89518 1.23369 0.89912 0.93743 0.95533 1.89072 1.15756 1.39805 1.85129 1.24189 0.90182 0.95184 0.95891 1.21714 0.90951 0.95496 0.87450 0.90692 1.43972 1.56792 1.10702 1.19521 1.20717 0.94070 0.84600 0.98480 1.19236 1.19901 0.91381 1.08231 0.91371 1.24974 0.98426 0.96070 1.00224 1.70109 1.43237 1.04982 1.36607 0.86275 0.78380 0.78176 0.83701 1.21511 1.21776 1.20596 0.92762 0.93256 0.93067 0.91606 0.92462 0.93351 0.90431 0.93921 0.88777 0.95296 0.94326 0.97669 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.79 37.16 0.36 -1.46 16 2 C -0.11 -1.58 5.15 -26.73 -0.14 -1.71 16 3 C -0.14 -2.47 2.23 -89.05 -0.20 -2.67 16 4 H 0.09 1.68 6.91 -51.93 -0.36 1.33 16 5 C 0.05 0.84 6.51 37.93 0.25 1.09 16 6 O -0.38 -7.53 11.23 -35.23 -0.40 -7.92 16 7 C 0.02 0.49 6.86 37.94 0.26 0.75 16 8 C 0.15 3.20 3.25 -66.36 -0.22 2.99 16 9 H 0.07 1.53 7.50 -51.93 -0.39 1.14 16 10 N -0.59 -14.99 2.83 -171.69 -0.49 -15.48 16 11 C 0.17 4.27 8.03 59.85 0.48 4.75 16 12 C -0.26 -7.13 9.63 -15.06 -0.15 -7.28 16 13 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 14 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 15 N -0.90 -26.77 10.68 55.49 0.59 -26.18 16 16 Si 0.90 22.01 29.58 -169.99 -5.03 16.98 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.57 7.63 -51.93 -0.40 0.18 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.06 0.76 7.96 -51.93 -0.41 0.34 16 25 H 0.05 0.69 7.74 -51.93 -0.40 0.29 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.10 8.06 -51.93 -0.42 1.68 16 29 H 0.03 0.81 7.41 -51.93 -0.38 0.42 16 30 H 0.04 1.06 7.21 -51.93 -0.37 0.68 16 31 H 0.00 0.11 6.42 -51.93 -0.33 -0.22 16 32 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 255.87 15.07 3.86 3.86 Total: -1.00 -29.77 255.87 -6.03 -35.80 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -5.13 Total: -3.46 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 0.57 Total: -3.60 kcal Atomic # 7 Polarization: -41.77 SS G_CDS: 0.11 Total: -41.66 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.40 Total: -7.92 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.77 -6.03 -35.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688202130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.223 kcal (2) G-P(sol) polarization free energy of solvation -29.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds