Wall clock time and date at job start Mon Mar 30 2020 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 H 1.08997 * 110.56360 * 52.32405 * 3 2 1 5 5 C 1.54802 * 110.61131 * 289.51679 * 3 2 1 6 6 O 1.44421 * 104.85509 * 217.50986 * 5 3 2 7 7 C 1.44424 * 105.27899 * 40.46534 * 6 5 3 8 8 C 1.54480 * 104.80011 * 319.48911 * 7 6 5 9 9 H 1.09001 * 110.51582 * 142.76323 * 8 7 6 10 10 N 1.46504 * 110.50844 * 265.32932 * 8 7 6 11 11 C 1.46502 * 119.99983 * 56.69748 * 10 8 7 12 12 C 1.36933 * 120.00269 * 236.69538 * 10 8 7 13 13 H 1.08001 * 120.00310 * 39.01775 * 12 10 8 14 14 C 1.38814 * 119.99946 * 219.02539 * 12 10 8 15 15 N 1.31612 * 120.00319 * 26.24937 * 14 12 10 16 16 Si 1.86801 * 119.99745 * 206.25428 * 14 12 10 17 17 H 1.48510 * 109.47349 * 59.99673 * 16 14 12 18 18 H 1.48499 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47319 * 299.99970 * 16 14 12 20 20 H 1.08999 * 109.46721 * 300.00015 * 1 2 3 21 21 H 1.09001 * 109.47357 * 59.99800 * 1 2 3 22 22 H 1.08995 * 109.46879 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46897 * 240.00105 * 2 1 3 24 24 H 1.09001 * 109.47357 * 120.00200 * 2 1 3 25 25 H 1.09006 * 110.38399 * 98.64257 * 5 3 2 26 26 H 1.08995 * 110.39915 * 336.39090 * 5 3 2 27 27 H 1.08995 * 110.37701 * 200.65388 * 7 6 5 28 28 H 1.08998 * 110.37359 * 78.31283 * 7 6 5 29 29 H 1.09000 * 109.46848 * 275.28651 * 11 10 8 30 30 H 1.09003 * 109.46928 * 35.27848 * 11 10 8 31 31 H 1.08997 * 109.47193 * 155.28468 * 11 10 8 32 32 H 0.97001 * 120.00046 * 5.35216 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5796 2.0114 0.8077 5 6 1.7653 2.1176 -1.3657 6 8 2.9232 2.9458 -1.6089 7 6 4.0529 2.1574 -1.1752 8 6 3.5797 1.4723 0.1260 9 1 3.9773 0.4595 0.1909 10 7 3.9839 2.2567 1.2954 11 6 3.5743 3.6583 1.4145 12 6 4.7445 1.6800 2.2772 13 1 5.5357 0.9935 2.0142 14 6 4.4986 1.9776 3.6106 15 7 3.2969 2.3579 3.9893 16 14 5.8735 1.8385 4.8675 17 1 6.9807 2.7548 4.4936 18 1 5.3567 2.2090 6.2095 19 1 6.3764 0.4415 4.8986 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8900 25 1 0.8652 2.7301 -1.3122 26 1 1.6656 1.3654 -2.1481 27 1 4.9101 2.8003 -0.9754 28 1 4.3052 1.4100 -1.9274 29 1 4.2782 4.2898 0.8724 30 1 2.5765 3.7822 0.9937 31 1 3.5635 3.9456 2.4659 32 1 2.5646 2.3558 3.3531 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688202131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:36 Heat of formation + Delta-G solvation = -38.644487 kcal Electronic energy + Delta-G solvation = -13667.386957 eV Core-core repulsion = 11435.217238 eV Total energy + Delta-G solvation = -2232.169719 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18631 -35.17815 -33.99229 -31.27226 -28.48330 -27.66915 -25.81854 -23.41724 -22.81259 -20.57141 -19.21784 -17.28590 -15.86328 -15.17680 -14.98587 -14.12139 -13.72400 -13.55517 -13.30308 -13.10389 -12.54132 -11.89025 -11.69872 -11.42805 -10.91660 -10.81270 -10.59265 -10.52506 -10.32875 -10.14149 -10.09607 -10.02437 -9.41431 -9.24300 -8.32343 -6.77239 -6.03445 -3.39147 3.48028 3.52251 3.69819 4.52261 4.57289 5.14358 5.19774 5.32370 5.44613 5.49198 5.62957 5.67562 5.77426 5.90615 6.00807 6.13458 6.21480 6.23607 6.32482 6.46341 6.54235 6.66845 6.77437 6.86421 6.97989 7.25204 7.37889 8.11381 8.59322 9.14610 9.81591 10.30928 11.14657 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.011634 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.198039 B = 2406.197227 C = 2738.869860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.141 4.141 4 H 0.085 0.915 5 C 0.051 3.949 6 O -0.381 6.381 7 C 0.028 3.972 8 C 0.148 3.852 9 H 0.076 0.924 10 N -0.586 5.586 11 C 0.122 3.878 12 C -0.361 4.361 13 H 0.049 0.951 14 C -0.015 4.015 15 N -0.901 5.901 16 Si 1.064 2.936 17 H -0.292 1.292 18 H -0.285 1.285 19 H -0.292 1.292 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.000 1.000 30 H 0.021 0.979 31 H 0.062 0.938 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.903 -2.812 -7.915 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.162 4.162 4 H 0.103 0.897 5 C -0.026 4.026 6 O -0.299 6.299 7 C -0.051 4.051 8 C 0.040 3.960 9 H 0.094 0.906 10 N -0.308 5.308 11 C -0.023 4.023 12 C -0.490 4.490 13 H 0.067 0.933 14 C -0.219 4.219 15 N -0.539 5.539 16 Si 0.894 3.106 17 H -0.219 1.219 18 H -0.211 1.211 19 H -0.218 1.218 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.040 0.960 31 H 0.081 0.919 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.494 -2.332 -6.367 7.225 hybrid contribution -0.446 -0.513 -1.593 1.732 sum -2.940 -2.845 -7.960 8.949 Atomic orbital electron populations 1.21786 0.96422 1.00960 1.01551 1.21467 0.95219 0.96158 1.01757 1.23228 0.99513 0.96070 0.97354 0.89671 1.23455 0.89598 0.93778 0.95800 1.89053 1.15831 1.39944 1.85104 1.24036 0.90102 0.94991 0.95956 1.21921 0.90665 0.95355 0.88105 0.90557 1.43860 1.60551 1.06048 1.20353 1.21005 0.95416 0.85069 1.00829 1.19836 1.11578 1.30268 0.87324 0.93314 1.26008 1.00329 0.98769 0.96843 1.70767 0.99591 1.46346 1.37168 0.83552 0.74943 0.76140 0.76011 1.21893 1.21099 1.21844 0.92688 0.93196 0.93234 0.92640 0.91448 0.90401 0.93259 0.89247 0.93579 0.98201 0.96027 0.91927 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.80 37.16 0.36 -1.69 16 2 C -0.11 -1.74 5.15 -26.73 -0.14 -1.88 16 3 C -0.14 -2.63 2.34 -88.88 -0.21 -2.84 16 4 H 0.08 1.83 6.90 -51.93 -0.36 1.47 16 5 C 0.05 0.85 6.54 38.11 0.25 1.10 16 6 O -0.38 -7.42 11.52 -35.23 -0.41 -7.83 16 7 C 0.03 0.53 6.81 37.93 0.26 0.79 16 8 C 0.15 3.16 3.25 -66.36 -0.22 2.95 16 9 H 0.08 1.64 7.53 -51.93 -0.39 1.25 16 10 N -0.59 -14.89 2.46 -171.69 -0.42 -15.32 16 11 C 0.12 3.03 8.89 59.85 0.53 3.56 16 12 C -0.36 -10.09 9.30 -15.06 -0.14 -10.23 16 13 H 0.05 1.38 7.95 -52.49 -0.42 0.96 16 14 C -0.02 -0.43 4.74 -17.43 -0.08 -0.51 16 15 N -0.90 -26.87 12.35 55.49 0.69 -26.18 16 16 Si 1.06 25.18 29.99 -169.99 -5.10 20.09 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.05 0.62 7.64 -51.93 -0.40 0.22 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 0.80 7.97 -51.92 -0.41 0.39 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.73 7.76 -51.93 -0.40 0.33 16 27 H 0.09 1.81 8.05 -51.93 -0.42 1.39 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 30 H 0.02 0.50 6.75 -51.93 -0.35 0.15 16 31 H 0.06 1.70 5.83 -51.93 -0.30 1.40 16 32 H 0.27 8.11 7.40 -40.82 -0.30 7.81 16 LS Contribution 257.10 15.07 3.87 3.87 Total: -1.00 -29.82 257.10 -5.83 -35.65 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -5.09 Total: -1.52 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 0.62 Total: -8.77 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.26 Total: -41.50 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.41 Total: -7.83 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.10 Total: 20.09 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.82 -5.83 -35.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688202131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.990 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds