Wall clock time and date at job start Mon Mar 30 2020 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 H 1.08997 * 110.56360 * 52.32405 * 3 2 1 5 5 C 1.54802 * 110.61131 * 289.51679 * 3 2 1 6 6 O 1.44421 * 104.85509 * 217.50986 * 5 3 2 7 7 C 1.44424 * 105.27899 * 40.46534 * 6 5 3 8 8 C 1.54480 * 104.80011 * 319.48911 * 7 6 5 9 9 H 1.09001 * 110.51582 * 142.76323 * 8 7 6 10 10 N 1.46504 * 110.50844 * 265.32932 * 8 7 6 11 11 C 1.46502 * 119.99983 * 56.69748 * 10 8 7 12 12 C 1.36933 * 120.00269 * 236.69538 * 10 8 7 13 13 H 1.08001 * 120.00310 * 39.01775 * 12 10 8 14 14 C 1.38814 * 119.99946 * 219.02539 * 12 10 8 15 15 N 1.31612 * 120.00319 * 26.24937 * 14 12 10 16 16 Si 1.86801 * 119.99745 * 206.25428 * 14 12 10 17 17 H 1.48510 * 109.47349 * 59.99673 * 16 14 12 18 18 H 1.48499 * 109.47164 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47319 * 299.99970 * 16 14 12 20 20 H 1.08999 * 109.46721 * 300.00015 * 1 2 3 21 21 H 1.09001 * 109.47357 * 59.99800 * 1 2 3 22 22 H 1.08995 * 109.46879 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46897 * 240.00105 * 2 1 3 24 24 H 1.09001 * 109.47357 * 120.00200 * 2 1 3 25 25 H 1.09006 * 110.38399 * 98.64257 * 5 3 2 26 26 H 1.08995 * 110.39915 * 336.39090 * 5 3 2 27 27 H 1.08995 * 110.37701 * 200.65388 * 7 6 5 28 28 H 1.08998 * 110.37359 * 78.31283 * 7 6 5 29 29 H 1.09000 * 109.46848 * 275.28651 * 11 10 8 30 30 H 1.09003 * 109.46928 * 35.27848 * 11 10 8 31 31 H 1.08997 * 109.47193 * 155.28468 * 11 10 8 32 32 H 0.97001 * 120.00046 * 5.35216 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5796 2.0114 0.8077 5 6 1.7653 2.1176 -1.3657 6 8 2.9232 2.9458 -1.6089 7 6 4.0529 2.1574 -1.1752 8 6 3.5797 1.4723 0.1260 9 1 3.9773 0.4595 0.1909 10 7 3.9839 2.2567 1.2954 11 6 3.5743 3.6583 1.4145 12 6 4.7445 1.6800 2.2772 13 1 5.5357 0.9935 2.0142 14 6 4.4986 1.9776 3.6106 15 7 3.2969 2.3579 3.9893 16 14 5.8735 1.8385 4.8675 17 1 6.9807 2.7548 4.4936 18 1 5.3567 2.2090 6.2095 19 1 6.3764 0.4415 4.8986 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8900 25 1 0.8652 2.7301 -1.3122 26 1 1.6656 1.3654 -2.1481 27 1 4.9101 2.8003 -0.9754 28 1 4.3052 1.4100 -1.9274 29 1 4.2782 4.2898 0.8724 30 1 2.5765 3.7822 0.9937 31 1 3.5635 3.9456 2.4659 32 1 2.5646 2.3558 3.3531 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688202131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:36 Heat of formation + Delta-G solvation = -57.376520 kcal Electronic energy + Delta-G solvation = -13668.199239 eV Core-core repulsion = 11435.217238 eV Total energy + Delta-G solvation = -2232.982001 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.73787 -37.09772 -35.39825 -33.24074 -30.13051 -29.11859 -27.89043 -24.79848 -24.65869 -22.15335 -20.84921 -19.34372 -17.45150 -16.73786 -16.48197 -15.85743 -15.58462 -15.32736 -14.91764 -14.63907 -14.07355 -13.41843 -13.21526 -12.93894 -12.84915 -12.51385 -12.45140 -12.12555 -11.93108 -11.85740 -11.63045 -11.48071 -11.38781 -10.77625 -10.40652 -8.88238 -8.19488 -5.58364 1.57168 1.64522 1.83735 2.61940 3.07711 3.17843 3.45476 3.77520 3.97171 4.07297 4.24665 4.32520 4.43277 4.53068 4.57101 4.67430 4.79053 4.81000 4.86660 4.89664 5.01080 5.14126 5.17078 5.18719 5.36906 5.42023 5.85894 5.94795 6.36358 7.08215 7.71766 8.20859 8.91619 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040500 B = 0.011634 C = 0.010221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.198039 B = 2406.197227 C = 2738.869860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.103 4.103 3 C -0.135 4.135 4 H 0.050 0.950 5 C 0.056 3.944 6 O -0.396 6.396 7 C 0.038 3.962 8 C 0.137 3.863 9 H 0.070 0.930 10 N -0.603 5.603 11 C 0.136 3.864 12 C -0.369 4.369 13 H 0.043 0.957 14 C -0.063 4.063 15 N -0.925 5.925 16 Si 1.113 2.887 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.273 1.273 20 H 0.038 0.962 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.039 0.961 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.003 0.997 30 H 0.029 0.971 31 H 0.034 0.966 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.937 -3.611 -9.350 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.155 4.155 4 H 0.069 0.931 5 C -0.021 4.021 6 O -0.316 6.316 7 C -0.041 4.041 8 C 0.029 3.971 9 H 0.088 0.912 10 N -0.325 5.325 11 C -0.010 4.010 12 C -0.499 4.499 13 H 0.061 0.939 14 C -0.262 4.262 15 N -0.564 5.564 16 Si 0.937 3.063 17 H -0.206 1.206 18 H -0.217 1.217 19 H -0.198 1.198 20 H 0.057 0.943 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.098 0.902 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.022 0.978 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.535 -3.146 -7.844 8.824 hybrid contribution -0.452 -0.275 -1.216 1.326 sum -2.987 -3.421 -9.060 10.135 Atomic orbital electron populations 1.21745 0.94387 1.02332 1.01743 1.21426 0.96975 0.94125 1.01588 1.23070 0.97124 0.97656 0.97698 0.93143 1.23594 0.89145 0.94318 0.95035 1.89039 1.16570 1.40947 1.85003 1.23890 0.89604 0.95122 0.95453 1.22127 0.92656 0.94712 0.87583 0.91191 1.44014 1.60932 1.06517 1.21078 1.20794 0.95903 0.85241 0.99025 1.20041 1.11709 1.29918 0.88212 0.93921 1.27353 1.01456 0.98364 0.99030 1.70890 1.00060 1.48624 1.36846 0.82900 0.72641 0.77286 0.73468 1.20648 1.21653 1.19814 0.94313 0.91197 0.91304 0.90187 0.94200 0.88977 0.90036 0.90789 0.90277 0.97843 0.95254 0.94702 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.80 71.98 0.71 -2.93 16 2 C -0.10 -3.15 5.15 30.59 0.16 -3.00 16 3 C -0.13 -4.90 2.34 -9.67 -0.02 -4.92 16 4 H 0.05 2.19 6.90 -2.39 -0.02 2.17 16 5 C 0.06 1.69 6.54 72.60 0.47 2.17 16 6 O -0.40 -14.53 11.52 -148.98 -1.72 -16.25 16 7 C 0.04 1.37 6.81 72.49 0.49 1.87 16 8 C 0.14 5.74 3.25 46.01 0.15 5.89 16 9 H 0.07 2.98 7.53 -2.39 -0.02 2.97 16 10 N -0.60 -31.00 2.46 -697.09 -1.72 -32.72 16 11 C 0.14 6.86 8.89 127.77 1.14 8.00 16 12 C -0.37 -20.90 9.30 84.03 0.78 -20.12 16 13 H 0.04 2.43 7.95 -2.91 -0.02 2.41 16 14 C -0.06 -3.62 4.74 84.86 0.40 -3.22 16 15 N -0.93 -56.50 12.35 21.65 0.27 -56.23 16 16 Si 1.11 50.95 29.99 68.60 2.06 53.01 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 21 H 0.07 1.48 7.64 -2.39 -0.02 1.46 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.08 2.05 7.97 -2.38 -0.02 2.03 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 26 H 0.08 2.02 7.76 -2.39 -0.02 2.00 16 27 H 0.07 2.93 8.05 -2.39 -0.02 2.91 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.03 1.39 6.75 -2.39 -0.02 1.38 16 31 H 0.03 1.94 5.83 -2.39 -0.01 1.93 16 32 H 0.25 15.91 7.40 -92.71 -0.69 15.22 16 Total: -1.00 -64.42 257.10 4.33 -60.10 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 1.16 Total: 8.35 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.28 Total: -16.26 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -1.45 Total: -88.95 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.72 Total: -16.25 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.06 Total: 53.01 kcal Total: -64.42 4.33 -60.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688202131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.721 kcal (2) G-P(sol) polarization free energy of solvation -64.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds