Wall clock time and date at job start Mon Mar 30 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48501 * 109.46664 * 269.99490 * 3 2 1 5 5 H 1.48496 * 109.47502 * 29.99304 * 3 2 1 6 6 H 1.48501 * 109.47063 * 149.99953 * 3 2 1 7 7 C 1.37873 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00133 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47320 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47171 * 179.97438 * 10 9 7 12 12 O 1.46300 * 111.00171 * 179.97438 * 11 10 9 13 13 C 1.42898 * 114.00244 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47319 * 180.02562 * 13 12 11 15 15 C 1.53785 * 113.61570 * 274.13969 * 14 13 12 16 16 C 1.53956 * 87.02052 * 220.04627 * 15 14 13 17 17 C 1.53777 * 87.11087 * 25.36196 * 16 15 14 18 18 H 0.96997 * 120.00349 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47331 * 60.00228 * 9 7 2 20 20 H 1.08998 * 109.47146 * 300.00104 * 9 7 2 21 21 H 1.09005 * 109.47066 * 60.00197 * 10 9 7 22 22 H 1.08998 * 109.47230 * 300.00217 * 10 9 7 23 23 H 1.00904 * 111.00064 * 56.04804 * 11 10 9 24 24 H 1.09002 * 109.47259 * 300.00462 * 13 12 11 25 25 H 1.09001 * 109.47074 * 60.00484 * 13 12 11 26 26 H 1.09001 * 112.85054 * 45.33390 * 14 13 12 27 27 H 1.09000 * 113.61195 * 334.56762 * 15 14 13 28 28 H 1.09001 * 113.61520 * 105.46896 * 15 14 13 29 29 H 1.09005 * 113.53676 * 270.80967 * 16 15 14 30 30 H 1.08993 * 113.66514 * 139.93360 * 16 15 14 31 31 H 1.09011 * 113.61618 * 220.09268 * 17 16 15 32 32 H 1.09000 * 113.69499 * 89.19666 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 7 5.4904 -2.6366 0.0022 12 8 6.0147 -4.0024 0.0039 13 6 7.4417 -4.0772 0.0034 14 6 7.8756 -5.5444 0.0047 15 6 7.9533 -6.1627 1.4106 16 6 9.2336 -6.8756 0.9388 17 6 9.3989 -5.7366 -0.0810 18 1 -0.4850 0.8400 -0.0004 19 1 3.8745 -0.6801 0.8912 20 1 3.8751 -0.6805 -0.8888 21 1 3.6584 -3.1510 -0.8876 22 1 3.6577 -3.1498 0.8924 23 1 5.8521 -2.1099 0.7832 24 1 7.8311 -3.5843 -0.8874 25 1 7.8319 -3.5819 0.8926 26 1 7.3181 -6.1513 -0.7089 27 1 8.1264 -5.4314 2.2002 28 1 7.1312 -6.8425 1.6348 29 1 9.0474 -7.8475 0.4816 30 1 10.0209 -6.9050 1.6920 31 1 9.7422 -6.0728 -1.0595 32 1 9.9680 -4.8880 0.2986 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688500064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:06 Heat of formation + Delta-G solvation = 3.481974 kcal Electronic energy + Delta-G solvation = -12268.591976 eV Core-core repulsion = 10038.248997 eV Total energy + Delta-G solvation = -2230.342979 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.05294 -36.40259 -34.06917 -32.09950 -29.14169 -27.41380 -25.75168 -23.64806 -22.64873 -20.45128 -19.52219 -16.98922 -16.56928 -15.93078 -15.31938 -14.71680 -14.21712 -14.01640 -13.61519 -12.91310 -12.62439 -12.54025 -12.18119 -11.75917 -11.48132 -11.09547 -10.75648 -10.65885 -10.50578 -10.35315 -9.97438 -9.85820 -9.81094 -9.30147 -8.58218 -8.16083 -6.08263 -4.07976 3.09012 3.30335 3.37274 3.40497 4.42115 4.44591 4.49133 4.62349 4.71267 5.25363 5.30254 5.37290 5.53929 5.55854 5.57723 5.66119 5.72258 5.78481 5.89517 6.09221 6.14188 6.27934 6.39354 6.65330 6.88434 7.21513 7.39065 7.65588 7.77302 8.47682 8.95205 9.52399 11.04790 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.090777 B = 0.005148 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.372963 B = 5437.608995 C = 5615.473752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.074 0.926 9 C -0.004 4.004 10 C 0.065 3.935 11 N -0.508 5.508 12 O -0.262 6.262 13 C 0.072 3.928 14 C -0.107 4.107 15 C -0.136 4.136 16 C -0.143 4.143 17 C -0.131 4.131 18 H 0.264 0.736 19 H 0.016 0.984 20 H 0.025 0.975 21 H 0.077 0.923 22 H 0.036 0.964 23 H 0.326 0.674 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.960 -9.029 1.753 20.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.092 0.908 9 C -0.042 4.042 10 C -0.064 4.064 11 N -0.179 5.179 12 O -0.269 6.269 13 C -0.006 4.006 14 C -0.127 4.127 15 C -0.173 4.173 16 C -0.180 4.180 17 C -0.169 4.169 18 H 0.074 0.926 19 H 0.034 0.966 20 H 0.043 0.957 21 H 0.096 0.904 22 H 0.054 0.946 23 H 0.140 0.860 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.715 -9.042 1.059 19.917 hybrid contribution 0.237 0.856 0.992 1.332 sum 17.952 -8.186 2.051 19.837 Atomic orbital electron populations 1.69901 1.06298 1.27058 1.50640 1.24977 0.94757 0.99178 0.94338 0.86736 0.80233 0.83387 0.78675 1.20082 1.21330 1.19037 1.20964 0.88748 0.94814 1.51583 0.90796 1.19522 0.97157 0.90469 0.97084 1.22262 0.82183 1.00666 1.01284 1.66972 1.10756 0.94663 1.45527 1.90761 1.19882 1.19231 1.97025 1.22356 0.82564 0.95689 1.00033 1.22559 0.96214 0.95364 0.98541 1.23002 0.97873 0.99811 0.96663 1.22839 0.98256 0.97947 0.98969 1.22890 0.95302 0.98897 0.99809 0.92570 0.96563 0.95709 0.90404 0.94602 0.85988 0.92839 0.93904 0.88422 0.90198 0.91332 0.90189 0.91491 0.91231 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.68 27.47 -169.99 -4.67 17.02 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 -0.10 4.30 -27.88 -0.12 -0.22 16 10 C 0.06 1.39 6.16 -3.82 -0.02 1.37 16 11 N -0.51 -9.56 7.33 -10.37 -0.08 -9.64 16 12 O -0.26 -4.66 11.28 -13.92 -0.16 -4.82 16 13 C 0.07 0.96 6.21 37.16 0.23 1.19 16 14 C -0.11 -1.19 4.00 -89.81 -0.36 -1.55 16 15 C -0.14 -1.38 7.65 -25.82 -0.20 -1.58 16 16 C -0.14 -1.18 8.09 -25.83 -0.21 -1.39 16 17 C -0.13 -1.15 7.65 -25.92 -0.20 -1.34 16 18 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 19 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 20 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 21 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.33 5.49 8.92 -39.29 -0.35 5.14 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.53 7.88 -51.93 -0.41 0.12 16 26 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 0.80 7.92 -51.93 -0.41 0.39 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.67 8.10 -51.93 -0.42 0.24 16 LS Contribution 268.99 15.07 4.05 4.05 Total: -1.00 -30.76 268.99 -6.71 -37.47 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.33 Total: -0.09 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -1.31 Total: -16.98 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.70 Total: -36.66 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.16 Total: -4.82 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.76 -6.71 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688500064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.954 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds