Wall clock time and date at job start Mon Mar 30 2020 02:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08998 * 109.81978 * 305.69946 * 3 2 1 5 5 C 1.54385 * 109.83047 * 184.81322 * 3 2 1 6 6 C 1.55449 * 102.18410 * 219.17822 * 5 3 2 7 7 H 1.09000 * 111.06062 * 276.12302 * 6 5 3 8 8 N 1.46902 * 111.18038 * 152.01046 * 6 5 3 9 9 C 1.46897 * 110.99825 * 161.90242 * 8 6 5 10 10 C 1.50704 * 109.47147 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00110 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00242 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99849 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99879 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.46871 * 90.00054 * 14 12 10 16 16 H 1.48494 * 109.47138 * 209.99880 * 14 12 10 17 17 H 1.48503 * 109.47340 * 330.00477 * 14 12 10 18 18 C 1.54949 * 100.98778 * 34.04011 * 6 5 3 19 19 O 1.43235 * 109.83057 * 66.58287 * 3 2 1 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 23 23 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 24 24 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 25 25 H 1.09003 * 110.84890 * 337.31904 * 5 3 2 26 26 H 1.09001 * 110.84561 * 100.93455 * 5 3 2 27 27 H 1.00902 * 110.99659 * 285.84894 * 8 6 5 28 28 H 1.08995 * 109.47012 * 299.99075 * 9 8 6 29 29 H 1.08994 * 109.47649 * 60.00062 * 9 8 6 30 30 H 0.97000 * 119.99804 * 179.97438 * 13 12 10 31 31 H 1.09004 * 110.30796 * 204.68685 * 18 6 5 32 32 H 1.09004 * 110.39201 * 82.56220 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5990 1.9904 -0.8327 5 6 3.5790 1.4539 -0.1219 6 6 3.9759 2.6069 0.8423 7 1 3.9060 3.5746 0.3455 8 7 5.3198 2.3961 1.3968 9 6 5.8648 3.6451 1.9452 10 6 7.2409 3.3900 2.5043 11 1 7.6677 2.3990 2.4573 12 6 7.9551 4.4218 3.0757 13 7 9.1561 4.1992 3.5631 14 14 7.2172 6.1359 3.1564 15 1 6.4591 6.2893 4.4240 16 1 8.3047 7.1458 3.1047 17 1 6.3012 6.3353 2.0046 18 6 2.8904 2.4622 1.9385 19 8 1.6971 2.0792 1.2364 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 1.8934 -0.5137 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 4.0016 0.5063 0.2122 26 1 3.8855 1.6779 -1.1436 27 1 5.3127 1.6675 2.0949 28 1 5.9265 4.3927 1.1545 29 1 5.2124 4.0087 2.7390 30 1 9.6587 4.9251 3.9648 31 1 2.7399 3.4130 2.4497 32 1 3.1732 1.6895 2.6534 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688500838.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:08 Heat of formation + Delta-G solvation = -80.956528 kcal Electronic energy + Delta-G solvation = -12849.961649 eV Core-core repulsion = 10615.957142 eV Total energy + Delta-G solvation = -2234.004507 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.71355 -36.92840 -34.65800 -34.32815 -31.85052 -29.37986 -27.70386 -24.57938 -23.35248 -22.16955 -21.46350 -18.97195 -18.05077 -16.89227 -16.59909 -15.94522 -15.54116 -14.79630 -14.74643 -14.56838 -14.24296 -14.16246 -13.58627 -13.28850 -12.88651 -12.58906 -12.47305 -12.26336 -11.94582 -11.81840 -11.76041 -11.61371 -11.32857 -10.83918 -10.48344 -9.20518 -8.31867 -6.36906 1.34317 1.36235 1.47119 2.32619 2.76140 3.02384 3.48589 3.63990 3.85712 3.95952 4.11394 4.22525 4.30953 4.50601 4.62508 4.67196 4.75528 4.83499 4.95096 5.01033 5.07607 5.10924 5.13757 5.34599 5.44453 5.49127 5.89887 6.05300 6.48577 6.58703 6.72342 7.28196 8.84852 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.076977 B = 0.006894 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.659327 B = 4060.421620 C = 4242.983334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.075 3.925 4 H 0.089 0.911 5 C -0.133 4.133 6 C 0.050 3.950 7 H 0.086 0.914 8 N -0.671 5.671 9 C 0.174 3.826 10 C -0.531 4.531 11 H 0.038 0.962 12 C 0.010 3.990 13 N -0.946 5.946 14 Si 0.950 3.050 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.250 1.250 18 C 0.025 3.975 19 O -0.391 6.391 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.044 0.956 23 H 0.057 0.943 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.340 0.660 28 H 0.027 0.973 29 H -0.011 1.011 30 H 0.268 0.732 31 H 0.079 0.921 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.416 -4.369 -7.289 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.107 0.893 5 C -0.171 4.171 6 C -0.061 4.061 7 H 0.105 0.895 8 N -0.302 5.302 9 C 0.046 3.954 10 C -0.569 4.569 11 H 0.057 0.943 12 C -0.188 4.188 13 N -0.587 5.587 14 Si 0.773 3.227 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.174 1.174 18 C -0.053 4.053 19 O -0.310 6.310 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.158 0.842 28 H 0.045 0.955 29 H 0.007 0.993 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.160 -4.190 -7.749 18.405 hybrid contribution 0.066 0.749 1.168 1.389 sum -16.094 -3.441 -6.581 17.725 Atomic orbital electron populations 1.21685 0.94931 1.01932 1.01775 1.21908 0.97168 0.94936 1.02867 1.22968 0.94102 0.94374 0.86770 0.89272 1.23133 0.94285 0.98834 1.00852 1.23384 0.87444 0.99918 0.95385 0.89550 1.60376 1.20113 1.09290 1.40392 1.19803 0.93155 0.89354 0.93132 1.21331 1.01032 0.96715 1.37829 0.94327 1.25864 0.95025 1.03647 0.94270 1.70048 1.13148 1.34428 1.41049 0.85674 0.78610 0.78581 0.79818 1.19079 1.20606 1.17353 1.24100 0.85773 0.99944 0.95526 1.88370 1.29679 1.78735 1.34216 0.91779 0.92121 0.93684 0.92404 0.89308 0.90107 0.88821 0.84162 0.95541 0.99306 0.92286 0.90279 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.82 71.98 0.71 -1.89 16 2 C -0.13 -2.55 5.50 30.60 0.17 -2.38 16 3 C 0.08 1.75 3.51 31.07 0.11 1.86 16 4 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 5 C -0.13 -3.37 6.27 31.91 0.20 -3.17 16 6 C 0.05 1.58 3.37 46.42 0.16 1.74 16 7 H 0.09 2.78 7.93 -2.39 -0.02 2.76 16 8 N -0.67 -26.68 6.38 -487.81 -3.11 -29.80 16 9 C 0.17 8.18 4.38 85.56 0.38 8.56 16 10 C -0.53 -30.62 9.87 25.60 0.25 -30.36 16 11 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 12 C 0.01 0.56 5.47 84.65 0.46 1.03 16 13 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 14 Si 0.95 43.72 27.47 68.60 1.88 45.61 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.25 -10.73 6.54 99.48 0.65 -10.07 16 18 C 0.03 0.76 7.37 72.65 0.54 1.29 16 19 O -0.39 -11.25 10.64 -148.98 -1.59 -12.84 16 20 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.04 0.93 7.89 -2.38 -0.02 0.92 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.08 2.06 7.85 -2.39 -0.02 2.04 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.34 13.25 8.30 -89.69 -0.74 12.51 16 28 H 0.03 1.26 7.15 -2.39 -0.02 1.24 16 29 H -0.01 -0.49 7.57 -2.39 -0.02 -0.51 16 30 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.06 1.75 7.80 -2.38 -0.02 1.73 16 Total: -1.00 -64.13 262.61 0.73 -63.39 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.28 Total: 15.69 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 2.97 Total: -23.33 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.81 Total: -88.52 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.59 Total: -12.84 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -64.13 0.73 -63.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688500838.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.564 kcal (2) G-P(sol) polarization free energy of solvation -64.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds