Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.86971 * 54.30235 * 3 2 1 5 5 C 1.54100 * 109.88186 * 175.30435 * 3 2 1 6 6 C 1.54812 * 104.18678 * 121.45700 * 5 3 2 7 7 H 1.09006 * 110.90514 * 262.64671 * 6 5 3 8 8 N 1.46900 * 110.91060 * 139.07860 * 6 5 3 9 9 C 1.46897 * 110.99965 * 154.99781 * 8 6 5 10 10 C 1.50704 * 109.46837 * 180.02562 * 9 8 6 11 11 H 1.07995 * 120.00034 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99729 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00165 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99649 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47340 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.46927 * 120.00266 * 14 12 10 17 17 H 1.48505 * 109.46910 * 239.99817 * 14 12 10 18 18 C 1.54995 * 102.09475 * 20.88108 * 6 5 3 19 19 O 1.43746 * 109.88119 * 293.29361 * 3 2 1 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 1.09001 * 110.49134 * 240.13045 * 5 3 2 26 26 H 1.08997 * 110.48711 * 2.78130 * 5 3 2 27 27 H 1.00904 * 110.99468 * 31.04839 * 8 6 5 28 28 H 1.09003 * 109.47407 * 300.00031 * 9 8 6 29 29 H 1.08999 * 109.47466 * 60.00357 * 9 8 6 30 30 H 0.96994 * 119.99854 * 179.97438 * 13 12 10 31 31 H 1.09002 * 110.62062 * 81.47712 * 18 6 5 32 32 H 1.08993 * 110.62306 * 204.32253 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5996 1.9911 0.8325 5 6 3.5764 1.4550 0.1186 6 6 4.0488 2.2061 -1.1500 7 1 4.3373 1.5043 -1.9327 8 7 5.1543 3.1212 -0.8364 9 6 5.9801 3.3758 -2.0243 10 6 7.1015 4.3160 -1.6643 11 1 7.1919 4.6869 -0.6541 12 6 8.0121 4.7026 -2.6248 13 7 7.9023 4.2506 -3.8549 14 14 9.4017 5.8686 -2.1787 15 1 9.3033 6.2292 -0.7416 16 1 10.7056 5.2057 -2.4351 17 1 9.3006 7.0982 -3.0052 18 6 2.7764 2.9937 -1.5538 19 8 1.6990 2.0815 -1.2416 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.8854 1.9905 1.0163 26 1 3.9667 0.4373 0.1270 27 1 5.7142 2.7647 -0.0764 28 1 6.3966 2.4355 -2.3856 29 1 5.3656 3.8247 -2.8046 30 1 8.5426 4.5229 -4.5306 31 1 2.6867 3.9063 -0.9646 32 1 2.7902 3.2255 -2.6186 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688500844.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -62.698364 kcal Electronic energy + Delta-G solvation = -12778.893830 eV Core-core repulsion = 10545.681056 eV Total energy + Delta-G solvation = -2233.212774 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.31996 -35.12274 -33.42032 -32.55910 -30.04818 -27.67647 -25.74554 -23.42590 -21.78392 -20.78645 -20.36512 -16.57236 -15.71384 -15.61216 -15.27409 -14.63258 -14.12069 -13.49397 -13.44368 -13.03097 -12.79220 -12.33318 -11.79031 -11.60909 -11.40041 -11.10362 -10.87773 -10.81738 -10.59864 -10.45830 -10.33515 -9.87653 -9.38191 -9.17405 -8.52139 -7.40941 -6.06336 -4.08740 3.29376 3.36700 3.41639 4.14605 4.41481 4.80082 4.82580 5.08519 5.18523 5.24972 5.29943 5.39706 5.56264 5.67082 5.87051 5.89332 5.94829 6.05690 6.07617 6.20598 6.32389 6.36432 6.41179 7.08566 7.29037 7.36429 7.75186 8.08240 8.31577 8.54120 9.00582 9.56536 11.04860 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.096644 B = 0.006142 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.654004 B = 4558.041939 C = 4641.014496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.080 3.920 4 H 0.064 0.936 5 C -0.156 4.156 6 C 0.054 3.946 7 H 0.053 0.947 8 N -0.679 5.679 9 C 0.192 3.808 10 C -0.516 4.516 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.900 3.100 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.283 1.283 18 C 0.058 3.942 19 O -0.380 6.380 20 H 0.061 0.939 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.332 0.668 28 H -0.012 1.012 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.135 -6.752 7.189 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.082 0.918 5 C -0.194 4.194 6 C -0.057 4.057 7 H 0.071 0.929 8 N -0.311 5.311 9 C 0.066 3.934 10 C -0.554 4.554 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.019 4.019 19 O -0.299 6.299 20 H 0.080 0.920 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.150 0.850 28 H 0.005 0.995 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.626 -6.212 6.799 14.061 hybrid contribution 1.533 -0.160 0.074 1.543 sum -9.093 -6.372 6.874 13.059 Atomic orbital electron populations 1.21714 0.95575 1.01103 1.02205 1.21727 0.96541 0.95420 1.02331 1.22637 0.93933 0.93483 0.87751 0.91846 1.23191 0.95398 1.01189 0.99613 1.23008 0.93961 0.93182 0.95531 0.92925 1.60697 1.13597 1.45351 1.11412 1.19642 0.91253 0.95235 0.87303 1.21215 1.10015 1.27621 0.96589 0.91856 1.24998 0.98089 0.96574 0.94898 1.69970 1.36894 1.44742 1.02059 0.86416 0.81638 0.80596 0.78608 1.19637 1.21073 1.20949 1.23599 0.84526 0.92532 1.01237 1.88861 1.43775 1.57786 1.39492 0.92007 0.93026 0.93120 0.91176 0.91319 0.90053 0.90939 0.85003 0.99452 0.95304 0.92903 0.91338 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.83 37.16 0.37 -1.20 16 2 C -0.12 -1.41 5.42 -26.74 -0.14 -1.56 16 3 C 0.08 1.10 3.40 -26.16 -0.09 1.01 16 4 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 5 C -0.16 -2.24 6.15 -25.20 -0.15 -2.40 16 6 C 0.05 0.99 3.47 -65.70 -0.23 0.76 16 7 H 0.05 1.02 7.83 -51.93 -0.41 0.62 16 8 N -0.68 -14.43 6.36 -105.87 -0.67 -15.10 16 9 C 0.19 5.03 5.30 -4.98 -0.03 5.00 16 10 C -0.52 -14.58 9.32 -34.44 -0.32 -14.90 16 11 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 14 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.06 1.02 7.41 38.21 0.28 1.30 16 19 O -0.38 -6.28 10.84 -35.23 -0.38 -6.66 16 20 H 0.06 0.73 7.89 -51.93 -0.41 0.32 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.08 1.13 7.93 -51.93 -0.41 0.71 16 26 H 0.07 0.95 7.70 -51.93 -0.40 0.55 16 27 H 0.33 6.68 8.33 -39.29 -0.33 6.36 16 28 H -0.01 -0.34 8.08 -51.93 -0.42 -0.76 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 266.12 15.07 4.01 4.01 Total: -1.00 -29.73 266.12 -7.04 -36.77 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.30 Total: 0.96 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.41 Total: -10.48 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.06 Total: -41.20 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.38 Total: -6.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.73 -7.04 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688500844.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.926 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds