Wall clock time and date at job start Mon Mar 30 2020 02:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47165 * 2 1 4 4 H 1.09000 * 110.55029 * 56.42906 * 3 2 1 5 5 C 1.54991 * 110.75559 * 179.40214 * 3 2 1 6 6 C 1.54816 * 102.09597 * 155.58917 * 5 3 2 7 7 H 1.08994 * 110.59790 * 220.38523 * 6 5 3 8 8 N 1.46497 * 110.48387 * 97.79430 * 6 5 3 9 9 C 1.46500 * 120.00457 * 303.78107 * 8 6 5 10 10 C 1.36945 * 119.99739 * 123.78116 * 8 6 5 11 11 H 1.08001 * 119.99759 * 339.95390 * 10 8 6 12 12 C 1.38810 * 119.99746 * 159.95132 * 10 8 6 13 13 N 1.31619 * 120.00414 * 343.94223 * 12 10 8 14 14 Si 1.86805 * 119.99793 * 163.66800 * 12 10 8 15 15 H 1.48500 * 109.46660 * 265.71404 * 14 12 10 16 16 H 1.48502 * 109.47038 * 25.71443 * 14 12 10 17 17 H 1.48498 * 109.47061 * 145.71582 * 14 12 10 18 18 C 1.54100 * 104.18476 * 339.12177 * 6 5 3 19 19 O 1.43740 * 107.29442 * 357.96726 * 18 6 5 20 20 H 1.08991 * 109.47787 * 59.99554 * 1 2 3 21 21 H 1.08999 * 109.46844 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46750 * 299.99485 * 1 2 3 23 23 H 1.09007 * 109.46750 * 240.00515 * 2 1 3 24 24 H 1.08991 * 109.47323 * 120.00708 * 2 1 3 25 25 H 1.09001 * 110.90600 * 37.38788 * 5 3 2 26 26 H 1.08999 * 110.90657 * 273.79255 * 5 3 2 27 27 H 1.09002 * 109.47276 * 265.75176 * 9 8 6 28 28 H 1.09002 * 109.47245 * 25.74934 * 9 8 6 29 29 H 1.09007 * 109.47243 * 145.74932 * 9 8 6 30 30 H 0.96993 * 120.00302 * 179.72785 * 13 12 10 31 31 H 1.09004 * 109.87676 * 117.39259 * 18 6 5 32 32 H 1.08999 * 109.87538 * 238.39619 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6355 1.9913 0.8504 5 6 3.5895 1.4772 0.0151 6 6 3.8891 2.8604 -0.6124 7 1 4.7376 2.7968 -1.2935 8 7 4.1461 3.8532 0.4338 9 6 3.1477 4.0910 1.4792 10 6 5.3197 4.5589 0.4346 11 1 6.1753 4.1845 -0.1079 12 6 5.4096 5.7554 1.1325 13 7 4.3151 6.3729 1.5239 14 14 7.0842 6.4854 1.5229 15 1 7.5077 6.0545 2.8795 16 1 8.0750 6.0145 0.5220 17 1 7.0008 7.9673 1.4778 18 6 2.6026 3.2114 -1.3846 19 8 1.7005 2.1019 -1.2388 20 1 -0.3634 0.5138 -0.8898 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8898 25 1 4.0025 0.6749 -0.5963 26 1 3.9698 1.4221 1.0351 27 1 2.5104 4.9266 1.1897 28 1 2.5378 3.1970 1.6094 29 1 3.6520 4.3264 2.4165 30 1 4.3780 7.2069 2.0150 31 1 2.1531 4.1120 -0.9662 32 1 2.8338 3.3678 -2.4383 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688505758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:16 Heat of formation + Delta-G solvation = -30.281822 kcal Electronic energy + Delta-G solvation = -13445.954129 eV Core-core repulsion = 11214.147042 eV Total energy + Delta-G solvation = -2231.807087 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.11248 -35.13975 -33.22206 -31.69068 -29.19368 -27.49282 -25.96222 -23.30985 -22.69597 -20.51433 -19.24662 -16.92489 -16.19927 -15.24694 -14.75626 -14.33303 -13.54705 -13.41169 -13.14002 -12.77244 -12.17542 -12.03858 -11.75639 -11.16925 -11.03804 -10.84481 -10.73822 -10.71164 -10.55965 -10.26240 -9.91534 -9.87498 -9.77941 -8.97843 -8.53080 -6.81179 -5.74890 -3.18647 3.37544 3.44126 3.45690 4.41216 4.51184 5.06702 5.24025 5.38892 5.43765 5.46438 5.60212 5.76302 5.83837 5.94768 6.05455 6.11607 6.20662 6.31027 6.35437 6.49728 6.52628 6.76525 6.80961 6.90957 7.35545 7.49856 7.71474 7.79368 8.36332 9.20652 9.84515 10.32749 11.30151 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.071305 B = 0.008677 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.585069 B = 3226.268333 C = 3267.304683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.073 3.927 4 H 0.070 0.930 5 C -0.166 4.166 6 C 0.148 3.852 7 H 0.075 0.925 8 N -0.590 5.590 9 C 0.157 3.843 10 C -0.259 4.259 11 H 0.071 0.929 12 C 0.001 3.999 13 N -0.906 5.906 14 Si 0.905 3.095 15 H -0.288 1.288 16 H -0.279 1.279 17 H -0.291 1.291 18 C 0.026 3.974 19 O -0.386 6.386 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.028 0.972 28 H 0.005 0.995 29 H 0.044 0.956 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 -9.548 -2.014 10.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.016 3.984 4 H 0.088 0.912 5 C -0.206 4.206 6 C 0.038 3.962 7 H 0.093 0.907 8 N -0.312 5.312 9 C 0.013 3.987 10 C -0.388 4.388 11 H 0.088 0.912 12 C -0.197 4.197 13 N -0.550 5.550 14 Si 0.735 3.265 15 H -0.215 1.215 16 H -0.204 1.204 17 H -0.218 1.218 18 C -0.052 4.052 19 O -0.305 6.305 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.023 0.977 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.187 -9.421 -2.054 10.512 hybrid contribution 1.022 0.695 0.382 1.293 sum -3.165 -8.727 -1.672 9.432 Atomic orbital electron populations 1.21711 0.95767 1.00837 1.02265 1.21556 0.96269 0.95421 1.02078 1.23241 0.94348 0.92742 0.88051 0.91200 1.23627 0.95342 0.99296 1.02362 1.21653 0.95545 0.88530 0.90438 0.90660 1.44024 1.18836 1.42824 1.25531 1.20881 0.91194 0.94949 0.91694 1.19282 0.88579 1.00846 1.30122 0.91170 1.24964 0.97004 0.95967 1.01759 1.70104 1.25781 1.17090 1.42066 0.86224 0.83722 0.78141 0.78386 1.21536 1.20436 1.21791 1.23958 0.91348 0.89585 1.00349 1.88734 1.57196 1.44378 1.40214 0.92122 0.93300 0.92971 0.91610 0.91189 0.91566 0.90236 0.95390 0.97651 0.93775 0.93717 0.91767 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.83 37.16 0.37 -1.49 16 2 C -0.12 -1.58 5.72 -26.73 -0.15 -1.73 16 3 C 0.07 1.25 2.95 -25.68 -0.08 1.17 16 4 H 0.07 1.27 5.95 -51.93 -0.31 0.96 16 5 C -0.17 -2.97 5.69 -24.72 -0.14 -3.11 16 6 C 0.15 3.11 3.58 -66.40 -0.24 2.87 16 7 H 0.08 1.56 7.90 -51.93 -0.41 1.15 16 8 N -0.59 -14.84 2.81 -171.73 -0.48 -15.32 16 9 C 0.16 3.89 7.87 59.85 0.47 4.36 16 10 C -0.26 -7.12 9.63 -15.06 -0.14 -7.27 16 11 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 12 C 0.00 0.04 5.03 -17.43 -0.09 -0.05 16 13 N -0.91 -26.49 10.72 55.49 0.59 -25.89 16 14 Si 0.91 21.85 29.58 -169.99 -5.03 16.82 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 C 0.03 0.53 7.22 37.73 0.27 0.80 16 19 O -0.39 -7.34 10.89 -35.23 -0.38 -7.73 16 20 H 0.06 0.82 7.92 -51.93 -0.41 0.41 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 26 H 0.08 1.48 7.95 -51.93 -0.41 1.06 16 27 H 0.03 0.75 7.35 -51.93 -0.38 0.37 16 28 H 0.01 0.11 4.75 -51.93 -0.25 -0.13 16 29 H 0.04 1.17 7.16 -51.93 -0.37 0.80 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.06 1.44 7.28 -51.93 -0.38 1.06 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 254.02 15.07 3.83 3.83 Total: -1.00 -29.27 254.02 -6.20 -35.47 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -5.00 Total: -2.75 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.27 Total: -4.44 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.11 Total: -41.21 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.38 Total: -7.73 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.27 -6.20 -35.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688505758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.190 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds