Wall clock time and date at job start Mon Mar 30 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47165 * 2 1 4 4 H 1.09000 * 110.55029 * 56.42906 * 3 2 1 5 5 C 1.54991 * 110.75559 * 179.40214 * 3 2 1 6 6 C 1.54816 * 102.09597 * 155.58917 * 5 3 2 7 7 H 1.08994 * 110.59790 * 220.38523 * 6 5 3 8 8 N 1.46497 * 110.48387 * 97.79430 * 6 5 3 9 9 C 1.46500 * 120.00457 * 303.78107 * 8 6 5 10 10 C 1.36945 * 119.99739 * 123.78116 * 8 6 5 11 11 H 1.08001 * 119.99759 * 339.95390 * 10 8 6 12 12 C 1.38810 * 119.99746 * 159.95132 * 10 8 6 13 13 N 1.31619 * 120.00414 * 343.94223 * 12 10 8 14 14 Si 1.86805 * 119.99793 * 163.66800 * 12 10 8 15 15 H 1.48500 * 109.46660 * 265.71404 * 14 12 10 16 16 H 1.48502 * 109.47038 * 25.71443 * 14 12 10 17 17 H 1.48498 * 109.47061 * 145.71582 * 14 12 10 18 18 C 1.54100 * 104.18476 * 339.12177 * 6 5 3 19 19 O 1.43740 * 107.29442 * 357.96726 * 18 6 5 20 20 H 1.08991 * 109.47787 * 59.99554 * 1 2 3 21 21 H 1.08999 * 109.46844 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46750 * 299.99485 * 1 2 3 23 23 H 1.09007 * 109.46750 * 240.00515 * 2 1 3 24 24 H 1.08991 * 109.47323 * 120.00708 * 2 1 3 25 25 H 1.09001 * 110.90600 * 37.38788 * 5 3 2 26 26 H 1.08999 * 110.90657 * 273.79255 * 5 3 2 27 27 H 1.09002 * 109.47276 * 265.75176 * 9 8 6 28 28 H 1.09002 * 109.47245 * 25.74934 * 9 8 6 29 29 H 1.09007 * 109.47243 * 145.74932 * 9 8 6 30 30 H 0.96993 * 120.00302 * 179.72785 * 13 12 10 31 31 H 1.09004 * 109.87676 * 117.39259 * 18 6 5 32 32 H 1.08999 * 109.87538 * 238.39619 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6355 1.9913 0.8504 5 6 3.5895 1.4772 0.0151 6 6 3.8891 2.8604 -0.6124 7 1 4.7376 2.7968 -1.2935 8 7 4.1461 3.8532 0.4338 9 6 3.1477 4.0910 1.4792 10 6 5.3197 4.5589 0.4346 11 1 6.1753 4.1845 -0.1079 12 6 5.4096 5.7554 1.1325 13 7 4.3151 6.3729 1.5239 14 14 7.0842 6.4854 1.5229 15 1 7.5077 6.0545 2.8795 16 1 8.0750 6.0145 0.5220 17 1 7.0008 7.9673 1.4778 18 6 2.6026 3.2114 -1.3846 19 8 1.7005 2.1019 -1.2388 20 1 -0.3634 0.5138 -0.8898 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8898 25 1 4.0025 0.6749 -0.5963 26 1 3.9698 1.4221 1.0351 27 1 2.5104 4.9266 1.1897 28 1 2.5378 3.1970 1.6094 29 1 3.6520 4.3264 2.4165 30 1 4.3780 7.2069 2.0150 31 1 2.1531 4.1120 -0.9662 32 1 2.8338 3.3678 -2.4383 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688505758.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:15 Heat of formation + Delta-G solvation = -48.438317 kcal Electronic energy + Delta-G solvation = -13446.741454 eV Core-core repulsion = 11214.147042 eV Total energy + Delta-G solvation = -2232.594412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.66178 -37.00680 -34.43577 -33.61396 -30.91060 -29.00254 -27.99827 -24.97044 -24.24639 -21.83438 -20.96511 -18.91912 -17.85510 -16.74101 -16.49784 -16.05290 -15.26879 -14.83297 -14.74044 -14.22502 -13.82369 -13.59697 -13.30797 -12.90167 -12.67418 -12.51090 -12.46186 -12.28564 -12.02713 -11.95257 -11.68646 -11.58921 -11.36579 -10.69106 -10.45279 -8.85723 -7.85858 -5.32394 1.46416 1.47705 1.57005 2.48716 3.00168 3.26281 3.62327 3.84076 3.90381 4.15899 4.25300 4.36565 4.46211 4.50364 4.69098 4.73721 4.90895 4.99195 5.10249 5.11833 5.15549 5.21892 5.31894 5.34638 5.47492 5.58130 5.66133 6.00793 6.30181 7.10790 7.82643 8.26529 9.17790 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.071305 B = 0.008677 C = 0.008568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.585069 B = 3226.268333 C = 3267.304683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C 0.071 3.929 4 H 0.055 0.945 5 C -0.155 4.155 6 C 0.137 3.863 7 H 0.078 0.922 8 N -0.604 5.604 9 C 0.176 3.824 10 C -0.268 4.268 11 H 0.076 0.924 12 C -0.054 4.054 13 N -0.939 5.939 14 Si 0.971 3.029 15 H -0.287 1.287 16 H -0.266 1.266 17 H -0.296 1.296 18 C 0.036 3.964 19 O -0.388 6.388 20 H 0.045 0.955 21 H 0.073 0.927 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.073 0.927 27 H -0.003 1.003 28 H 0.035 0.965 29 H 0.017 0.983 30 H 0.248 0.752 31 H 0.033 0.967 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 -11.367 -2.428 12.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C 0.014 3.986 4 H 0.073 0.927 5 C -0.194 4.194 6 C 0.029 3.971 7 H 0.097 0.903 8 N -0.327 5.327 9 C 0.031 3.969 10 C -0.398 4.398 11 H 0.094 0.906 12 C -0.249 4.249 13 N -0.586 5.586 14 Si 0.800 3.200 15 H -0.214 1.214 16 H -0.190 1.190 17 H -0.223 1.223 18 C -0.043 4.043 19 O -0.307 6.307 20 H 0.064 0.936 21 H 0.092 0.908 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.091 0.909 27 H 0.016 0.984 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.699 -11.280 -2.490 12.130 hybrid contribution 0.828 1.204 0.469 1.534 sum -2.871 -10.077 -2.021 10.671 Atomic orbital electron populations 1.21703 0.95027 1.02242 1.01509 1.21570 0.96910 0.92776 1.03507 1.23381 0.93885 0.94653 0.86723 0.92717 1.23525 0.95934 0.97784 1.02156 1.21904 0.96057 0.89170 0.89983 0.90334 1.44219 1.18343 1.43422 1.26730 1.20573 0.90700 0.95112 0.90491 1.19657 0.89640 1.00903 1.29607 0.90630 1.25768 1.00323 0.96662 1.02163 1.70272 1.27768 1.17402 1.43122 0.85184 0.79859 0.76793 0.78207 1.21407 1.19030 1.22302 1.23720 0.90781 0.88923 1.00922 1.88749 1.57028 1.43861 1.41111 0.93550 0.90841 0.93110 0.90714 0.89162 0.88890 0.90852 0.98446 0.94692 0.96403 0.94246 0.94825 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.83 71.98 0.71 -2.58 16 2 C -0.11 -2.64 5.72 30.59 0.17 -2.46 16 3 C 0.07 2.26 2.95 31.27 0.09 2.35 16 4 H 0.06 1.92 5.95 -2.39 -0.01 1.90 16 5 C -0.15 -5.15 5.69 31.90 0.18 -4.97 16 6 C 0.14 5.60 3.58 45.98 0.16 5.77 16 7 H 0.08 3.14 7.90 -2.39 -0.02 3.12 16 8 N -0.60 -30.45 2.81 -697.23 -1.96 -32.41 16 9 C 0.18 8.89 7.87 127.77 1.01 9.89 16 10 C -0.27 -14.74 9.63 84.03 0.81 -13.93 16 11 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 12 C -0.05 -3.05 5.03 84.86 0.43 -2.62 16 13 N -0.94 -56.24 10.72 21.65 0.23 -56.00 16 14 Si 0.97 45.11 29.58 68.60 2.03 47.14 16 15 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 17 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 18 C 0.04 1.40 7.22 72.35 0.52 1.92 16 19 O -0.39 -14.15 10.89 -148.98 -1.62 -15.78 16 20 H 0.05 1.16 7.92 -2.39 -0.02 1.14 16 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 23 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.09 2.62 8.06 -2.39 -0.02 2.60 16 26 H 0.07 2.56 7.95 -2.39 -0.02 2.54 16 27 H 0.00 -0.15 7.35 -2.39 -0.02 -0.17 16 28 H 0.03 1.52 4.75 -2.39 -0.01 1.51 16 29 H 0.02 0.95 7.16 -2.38 -0.02 0.94 16 30 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.03 1.53 7.28 -2.38 -0.02 1.51 16 32 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -62.42 254.02 3.84 -58.58 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.08 Total: 5.10 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.09 Total: -6.63 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.73 Total: -88.41 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.62 Total: -15.78 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -62.42 3.84 -58.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688505758.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.141 kcal (2) G-P(sol) polarization free energy of solvation -62.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds