Wall clock time and date at job start Mon Mar 30 2020 02:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47016 * 2 1 4 4 H 1.08998 * 110.33429 * 307.25366 * 3 2 1 5 5 C 1.54477 * 110.37260 * 184.99815 * 3 2 1 6 6 C 1.54505 * 104.06759 * 217.19323 * 5 3 2 7 7 H 1.09002 * 110.51094 * 118.77975 * 6 5 3 8 8 N 1.46499 * 110.51515 * 241.35994 * 6 5 3 9 9 C 1.46496 * 120.00045 * 59.99266 * 8 6 5 10 10 C 1.36940 * 119.99756 * 239.99892 * 8 6 5 11 11 H 1.07994 * 119.99828 * 327.67984 * 10 8 6 12 12 C 1.38814 * 119.99763 * 147.68290 * 10 8 6 13 13 N 1.31617 * 120.00047 * 154.23413 * 12 10 8 14 14 Si 1.86799 * 120.00067 * 334.23086 * 12 10 8 15 15 H 1.48503 * 109.47120 * 95.21743 * 14 12 10 16 16 H 1.48503 * 109.46967 * 215.21905 * 14 12 10 17 17 H 1.48503 * 109.47404 * 335.21885 * 14 12 10 18 18 C 1.54482 * 104.06044 * 359.97438 * 6 5 3 19 19 O 1.44423 * 110.36898 * 69.62093 * 3 2 1 20 20 H 1.09000 * 109.47052 * 59.99414 * 1 2 3 21 21 H 1.09004 * 109.46931 * 299.99913 * 1 2 3 22 22 H 1.08999 * 109.46987 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47479 * 120.00281 * 2 1 3 24 24 H 1.09004 * 109.47320 * 240.00462 * 2 1 3 25 25 H 1.09007 * 110.50975 * 335.83835 * 5 3 2 26 26 H 1.08994 * 110.50978 * 98.40802 * 5 3 2 27 27 H 1.09004 * 109.46932 * 95.40841 * 9 8 6 28 28 H 1.08994 * 109.47142 * 215.40873 * 9 8 6 29 29 H 1.09004 * 109.47516 * 335.41135 * 9 8 6 30 30 H 0.97002 * 120.00138 * 179.97438 * 13 12 10 31 31 H 1.09007 * 110.37350 * 142.80874 * 18 6 5 32 32 H 1.08997 * 110.37720 * 265.14911 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0059 -0.8135 5 6 3.5794 1.4687 -0.1262 6 6 4.0107 2.6419 0.7819 7 1 4.6543 2.2857 1.5863 8 7 4.6943 3.6736 -0.0021 9 6 3.9956 4.3391 -1.1044 10 6 5.9865 4.0156 0.2953 11 1 6.3352 3.9719 1.3165 12 6 6.8481 4.4186 -0.7157 13 7 7.8670 5.2040 -0.4380 14 14 6.5614 3.8460 -2.4706 15 1 5.7895 4.8782 -3.2082 16 1 7.8689 3.6323 -3.1413 17 1 5.7978 2.5724 -2.4573 18 6 2.6808 3.1863 1.3488 19 8 1.7630 2.0736 1.2692 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 0.8899 24 1 1.8934 -0.5138 -0.8900 25 1 4.0078 0.5320 0.2307 26 1 3.8748 1.6537 -1.1589 27 1 3.5624 5.2738 -0.7483 28 1 4.7013 4.5486 -1.9081 29 1 3.2030 3.6900 -1.4768 30 1 8.4693 5.4853 -1.1444 31 1 2.8095 3.4980 2.3854 32 1 2.3225 4.0187 0.7432 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688505759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:17 Heat of formation + Delta-G solvation = -45.541062 kcal Electronic energy + Delta-G solvation = -13441.490332 eV Core-core repulsion = 11209.021555 eV Total energy + Delta-G solvation = -2232.468777 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67474 -37.26617 -34.46367 -33.90698 -31.45874 -28.98517 -28.07265 -25.05759 -24.32677 -21.90110 -21.06269 -19.03644 -17.68069 -17.23016 -16.65379 -16.25311 -15.31090 -14.97340 -14.65001 -14.37829 -14.27080 -13.95116 -13.66199 -13.44295 -12.66474 -12.62147 -12.53138 -12.24194 -12.08641 -11.80305 -11.62396 -11.52786 -11.43045 -10.74682 -10.57105 -8.90330 -8.24284 -5.56325 1.28018 1.39708 1.50576 2.39090 2.87414 3.02275 3.42156 3.79490 3.85215 4.12296 4.23214 4.25298 4.39245 4.49128 4.49390 4.66086 4.69744 4.82053 4.90497 4.96535 5.02877 5.11776 5.16348 5.21347 5.26982 5.46145 5.84630 5.91719 6.12819 6.90108 7.57695 7.97385 8.95625 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055922 B = 0.010139 C = 0.009334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.577109 B = 2761.053284 C = 2999.149463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.075 3.925 4 H 0.067 0.933 5 C -0.166 4.166 6 C 0.139 3.861 7 H 0.070 0.930 8 N -0.611 5.611 9 C 0.108 3.892 10 C -0.266 4.266 11 H 0.047 0.953 12 C -0.023 4.023 13 N -0.944 5.944 14 Si 0.948 3.052 15 H -0.274 1.274 16 H -0.309 1.309 17 H -0.259 1.259 18 C 0.039 3.961 19 O -0.383 6.383 20 H 0.056 0.944 21 H 0.048 0.952 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.264 0.736 31 H 0.092 0.908 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 -9.033 -1.854 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.018 3.982 4 H 0.085 0.915 5 C -0.206 4.206 6 C 0.031 3.969 7 H 0.088 0.912 8 N -0.335 5.335 9 C -0.035 4.035 10 C -0.395 4.395 11 H 0.065 0.935 12 C -0.220 4.220 13 N -0.588 5.588 14 Si 0.778 3.222 15 H -0.201 1.201 16 H -0.238 1.238 17 H -0.184 1.184 18 C -0.039 4.039 19 O -0.302 6.302 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.105 0.895 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.629 -9.020 -1.741 16.436 hybrid contribution 0.764 0.274 -0.818 1.152 sum -12.866 -8.747 -2.558 15.766 Atomic orbital electron populations 1.21706 0.94556 1.02264 1.01808 1.21612 0.97199 0.93187 1.03220 1.23109 0.93470 0.95311 0.86341 0.91514 1.23490 0.96266 0.99871 1.00984 1.21954 0.93322 0.87971 0.93619 0.91171 1.44171 1.10722 1.41483 1.37120 1.21356 0.95631 0.96411 0.90146 1.18743 0.87427 1.40567 0.92791 0.93537 1.25962 0.95741 0.98046 1.02207 1.70027 1.19654 1.34302 1.34854 0.85838 0.75440 0.79864 0.81093 1.20140 1.23819 1.18369 1.23807 0.88691 0.89467 1.01977 1.89059 1.58697 1.44195 1.38199 0.92480 0.93296 0.91243 0.91325 0.89459 0.90221 0.91518 0.95638 0.95750 0.91665 0.92701 0.88953 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.85 71.98 0.71 -2.11 16 2 C -0.11 -2.54 5.56 30.60 0.17 -2.37 16 3 C 0.08 2.12 3.25 31.10 0.10 2.22 16 4 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 5 C -0.17 -5.49 5.77 31.61 0.18 -5.31 16 6 C 0.14 5.41 3.60 46.01 0.17 5.57 16 7 H 0.07 2.89 7.94 -2.39 -0.02 2.87 16 8 N -0.61 -28.54 2.50 -697.12 -1.74 -30.28 16 9 C 0.11 4.53 8.13 127.77 1.04 5.57 16 10 C -0.27 -15.08 9.88 84.03 0.83 -14.25 16 11 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 12 C -0.02 -1.33 5.29 84.86 0.45 -0.88 16 13 N -0.94 -58.90 13.97 21.65 0.30 -58.60 16 14 Si 0.95 45.90 25.06 68.60 1.72 47.62 16 15 H -0.27 -12.59 6.64 99.48 0.66 -11.93 16 16 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 17 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 18 C 0.04 1.33 7.24 72.49 0.52 1.85 16 19 O -0.38 -12.25 11.13 -148.98 -1.66 -13.91 16 20 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.05 1.06 8.01 -2.38 -0.02 1.04 16 22 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 25 H 0.08 2.44 7.87 -2.38 -0.02 2.42 16 26 H 0.07 2.35 7.22 -2.39 -0.02 2.34 16 27 H 0.03 1.03 8.08 -2.38 -0.02 1.01 16 28 H 0.02 1.10 2.64 -2.39 -0.01 1.10 16 29 H 0.06 2.29 7.06 -2.38 -0.02 2.27 16 30 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 31 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 32 H 0.06 2.03 6.91 -2.39 -0.02 2.01 16 Total: -1.00 -63.53 253.02 3.82 -59.71 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.03 Total: 5.18 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.17 Total: -9.71 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -1.44 Total: -88.88 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -1.66 Total: -13.91 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.72 Total: 47.62 kcal Total: -63.53 3.82 -59.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688505759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.164 kcal (2) G-P(sol) polarization free energy of solvation -63.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds