Wall clock time and date at job start Mon Mar 30 2020 02:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99838 * 2 1 4 4 C 1.52994 * 115.54978 * 34.33308 * 3 2 1 5 5 C 1.52998 * 117.51719 * 248.62776 * 3 2 1 6 6 C 1.52998 * 60.00182 * 252.52293 * 5 3 2 7 7 H 1.08996 * 117.52001 * 252.51802 * 6 5 3 8 8 N 1.46905 * 117.49755 * 107.49119 * 6 5 3 9 9 C 1.46901 * 110.99870 * 136.38039 * 8 6 5 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46807 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00107 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99714 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99834 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00034 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47154 * 89.99933 * 15 13 11 17 17 H 1.48501 * 109.47128 * 209.99734 * 15 13 11 18 18 H 1.48501 * 109.47273 * 329.99905 * 15 13 11 19 19 H 1.09004 * 109.47012 * 59.99853 * 1 2 3 20 20 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46636 * 299.99622 * 1 2 3 22 22 H 1.09005 * 109.46929 * 205.66247 * 4 3 2 23 23 H 1.08995 * 109.47413 * 325.66843 * 4 3 2 24 24 H 1.09011 * 109.47036 * 85.66886 * 4 3 2 25 25 H 1.09004 * 117.49893 * 145.03107 * 5 3 2 26 26 H 1.09002 * 117.50144 * 0.02562 * 5 3 2 27 27 H 1.00901 * 110.99869 * 12.42751 * 8 6 5 28 28 H 1.09004 * 109.47031 * 299.99620 * 9 8 6 29 29 H 1.08995 * 109.47111 * 59.99900 * 9 8 6 30 30 H 1.08995 * 109.46615 * 299.99641 * 10 9 8 31 31 H 1.08996 * 109.46939 * 60.00272 * 10 9 8 32 32 H 0.96997 * 120.00332 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2373 2.3719 0.7785 5 6 2.7494 1.7501 -1.2636 6 6 3.5374 1.3988 0.0000 7 1 3.9915 2.2197 0.5549 8 7 4.2939 0.1395 -0.0006 9 6 5.6305 0.3281 0.5790 10 6 6.3867 -1.0019 0.5605 11 6 7.7581 -0.8082 1.1546 12 1 8.0602 0.1660 1.5094 13 6 8.6270 -1.8749 1.2451 14 7 9.8239 -1.7058 1.7630 15 14 8.1046 -3.5598 0.6307 16 1 8.4733 -3.7009 -0.8009 17 1 8.7908 -4.6108 1.4244 18 1 6.6345 -3.7074 0.7802 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.4657 3.3565 0.3705 23 1 0.1676 2.1816 0.6913 24 1 1.5280 2.3373 1.8286 25 1 2.6851 2.8025 -1.5403 26 1 2.7922 1.0470 -2.0954 27 1 4.3544 -0.2455 -0.9314 28 1 6.1795 1.0659 -0.0062 29 1 5.5347 0.6778 1.6069 30 1 5.8379 -1.7399 1.1454 31 1 6.4825 -1.3510 -0.4676 32 1 10.4351 -2.4563 1.8271 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694441114.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:25 Heat of formation + Delta-G solvation = -19.229991 kcal Electronic energy + Delta-G solvation = -12610.373654 eV Core-core repulsion = 10379.045811 eV Total energy + Delta-G solvation = -2231.327844 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.11402 -36.06276 -34.00377 -32.27379 -29.59240 -28.12398 -26.47039 -23.91380 -21.45606 -20.48195 -19.91848 -16.86475 -16.32374 -15.56453 -15.04314 -14.63733 -14.29115 -14.03015 -13.33242 -13.16020 -12.79987 -12.44066 -12.20104 -11.98655 -11.54109 -11.30220 -10.99683 -10.87903 -10.54208 -10.00050 -9.81546 -9.74947 -9.19145 -8.97732 -8.50034 -7.70273 -6.01139 -3.99334 3.35825 3.43137 3.50851 3.66639 3.88408 4.34906 4.50342 4.80204 4.95315 5.16093 5.29737 5.33725 5.34816 5.45954 5.54548 5.68676 5.72647 5.77043 5.91791 6.00584 6.21493 6.31059 6.80117 7.16190 7.35354 7.42953 7.68555 7.79254 7.94506 8.56419 9.02780 9.61520 11.12195 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055678 B = 0.006699 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.766615 B = 4178.576185 C = 4462.098966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.331 6.331 3 C 0.039 3.961 4 C -0.143 4.143 5 C -0.225 4.225 6 C 0.058 3.942 7 H 0.114 0.886 8 N -0.652 5.652 9 C 0.073 3.927 10 C -0.011 4.011 11 C -0.521 4.521 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.262 1.262 19 H 0.037 0.963 20 H 0.083 0.917 21 H 0.043 0.957 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.098 0.902 27 H 0.340 0.660 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.009 0.991 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.631 6.585 -4.781 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.248 6.248 3 C -0.003 4.003 4 C -0.200 4.200 5 C -0.264 4.264 6 C -0.055 4.055 7 H 0.132 0.868 8 N -0.281 5.281 9 C -0.054 4.054 10 C -0.049 4.049 11 C -0.559 4.559 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.544 5.544 15 Si 0.708 3.292 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.187 1.187 19 H 0.055 0.945 20 H 0.102 0.898 21 H 0.062 0.938 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.159 0.841 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.601 6.069 -4.135 19.071 hybrid contribution 0.092 -0.237 -1.087 1.116 sum -17.508 5.831 -5.221 19.178 Atomic orbital electron populations 1.22788 0.82440 1.02354 0.99611 1.88097 1.18407 1.24179 1.94114 1.22280 0.93818 0.85165 0.99016 1.21788 1.00182 0.97288 1.00742 1.24244 1.06808 1.01866 0.93476 1.22812 0.90190 0.93792 0.98677 0.86815 1.60239 1.18289 1.22573 1.26995 1.22049 0.85490 0.99442 0.98457 1.19554 0.95560 0.93144 0.96593 1.21068 0.96791 0.97622 1.40422 0.91089 1.24997 0.94690 0.99011 0.94695 1.69912 1.07045 1.31754 1.45673 0.86755 0.79593 0.84022 0.78850 1.20401 1.21424 1.18664 0.94475 0.89840 0.93835 0.91329 0.91451 0.91217 0.88720 0.88339 0.84090 0.95807 0.91562 0.95514 0.97262 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.05 101.05 1.02 1.28 16 2 O -0.33 -5.05 10.71 -35.23 -0.38 -5.43 16 3 C 0.04 0.53 3.03 -90.62 -0.27 0.25 16 4 C -0.14 -1.46 9.49 37.15 0.35 -1.11 16 5 C -0.22 -2.83 9.82 -26.73 -0.26 -3.09 16 6 C 0.06 0.87 6.03 -67.71 -0.41 0.46 16 7 H 0.11 1.61 7.90 -51.93 -0.41 1.20 16 8 N -0.65 -12.01 6.55 -106.72 -0.70 -12.71 16 9 C 0.07 1.54 5.48 -3.82 -0.02 1.52 16 10 C -0.01 -0.27 4.30 -27.88 -0.12 -0.39 16 11 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -28.41 13.96 55.43 0.77 -27.63 16 15 Si 0.88 22.39 27.47 -169.99 -4.67 17.72 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 19 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 20 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 21 H 0.04 0.41 6.47 -51.93 -0.34 0.07 16 22 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 23 H 0.07 0.60 5.78 -51.93 -0.30 0.30 16 24 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 26 H 0.10 1.27 8.09 -51.93 -0.42 0.85 16 27 H 0.34 6.02 8.52 -39.29 -0.33 5.69 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 31 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 267.25 15.07 4.03 4.03 Total: -1.00 -32.21 267.25 -6.19 -38.40 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -5.10 Total: 0.35 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.15 Total: -14.73 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.07 Total: -40.34 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.38 Total: -5.43 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.67 Total: 17.72 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.21 -6.19 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694441114.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.170 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds