Wall clock time and date at job start Mon Mar 30 2020 02:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99838 * 2 1 4 4 C 1.52994 * 115.54978 * 34.33308 * 3 2 1 5 5 C 1.52998 * 117.51719 * 248.62776 * 3 2 1 6 6 C 1.52998 * 60.00182 * 252.52293 * 5 3 2 7 7 H 1.08996 * 117.52001 * 252.51802 * 6 5 3 8 8 N 1.46905 * 117.49755 * 107.49119 * 6 5 3 9 9 C 1.46901 * 110.99870 * 136.38039 * 8 6 5 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 6 11 11 C 1.50703 * 109.46807 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00107 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99714 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99834 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 120.00034 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47154 * 89.99933 * 15 13 11 17 17 H 1.48501 * 109.47128 * 209.99734 * 15 13 11 18 18 H 1.48501 * 109.47273 * 329.99905 * 15 13 11 19 19 H 1.09004 * 109.47012 * 59.99853 * 1 2 3 20 20 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46636 * 299.99622 * 1 2 3 22 22 H 1.09005 * 109.46929 * 205.66247 * 4 3 2 23 23 H 1.08995 * 109.47413 * 325.66843 * 4 3 2 24 24 H 1.09011 * 109.47036 * 85.66886 * 4 3 2 25 25 H 1.09004 * 117.49893 * 145.03107 * 5 3 2 26 26 H 1.09002 * 117.50144 * 0.02562 * 5 3 2 27 27 H 1.00901 * 110.99869 * 12.42751 * 8 6 5 28 28 H 1.09004 * 109.47031 * 299.99620 * 9 8 6 29 29 H 1.08995 * 109.47111 * 59.99900 * 9 8 6 30 30 H 1.08995 * 109.46615 * 299.99641 * 10 9 8 31 31 H 1.08996 * 109.46939 * 60.00272 * 10 9 8 32 32 H 0.96997 * 120.00332 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2373 2.3719 0.7785 5 6 2.7494 1.7501 -1.2636 6 6 3.5374 1.3988 0.0000 7 1 3.9915 2.2197 0.5549 8 7 4.2939 0.1395 -0.0006 9 6 5.6305 0.3281 0.5790 10 6 6.3867 -1.0019 0.5605 11 6 7.7581 -0.8082 1.1546 12 1 8.0602 0.1660 1.5094 13 6 8.6270 -1.8749 1.2451 14 7 9.8239 -1.7058 1.7630 15 14 8.1046 -3.5598 0.6307 16 1 8.4733 -3.7009 -0.8009 17 1 8.7908 -4.6108 1.4244 18 1 6.6345 -3.7074 0.7802 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.4657 3.3565 0.3705 23 1 0.1676 2.1816 0.6913 24 1 1.5280 2.3373 1.8286 25 1 2.6851 2.8025 -1.5403 26 1 2.7922 1.0470 -2.0954 27 1 4.3544 -0.2455 -0.9314 28 1 6.1795 1.0659 -0.0062 29 1 5.5347 0.6778 1.6069 30 1 5.8379 -1.7399 1.1454 31 1 6.4825 -1.3510 -0.4676 32 1 10.4351 -2.4563 1.8271 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694441114.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:25 Heat of formation + Delta-G solvation = -42.955599 kcal Electronic energy + Delta-G solvation = -12611.402474 eV Core-core repulsion = 10379.045811 eV Total energy + Delta-G solvation = -2232.356663 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.16296 -37.37528 -35.63806 -34.20655 -31.25336 -29.24109 -27.35644 -25.82595 -22.62275 -22.27132 -21.02475 -18.99833 -17.51606 -16.70093 -16.29453 -16.15538 -15.84840 -15.40904 -14.84696 -14.46321 -14.15620 -13.99175 -13.52574 -13.08106 -12.92015 -12.84402 -12.30471 -12.05705 -12.01959 -11.84668 -11.65250 -11.44220 -11.24280 -10.77772 -10.03502 -9.05849 -8.31106 -6.35595 1.35449 1.38224 1.51925 2.36192 2.69361 2.85269 3.04382 3.15207 3.80675 4.03502 4.08017 4.37481 4.48531 4.53005 4.55566 4.58937 4.74502 4.83253 4.87966 4.89126 4.93846 4.96455 5.19343 5.29504 5.46430 5.62056 6.13132 6.23262 6.43891 6.51866 6.72417 7.29446 8.85522 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055678 B = 0.006699 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.766615 B = 4178.576185 C = 4462.098966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.368 6.368 3 C 0.040 3.960 4 C -0.140 4.140 5 C -0.204 4.204 6 C 0.024 3.976 7 H 0.119 0.881 8 N -0.659 5.659 9 C 0.089 3.911 10 C -0.005 4.005 11 C -0.534 4.534 12 H 0.035 0.965 13 C 0.008 3.992 14 N -0.949 5.949 15 Si 0.952 3.048 16 H -0.264 1.264 17 H -0.281 1.281 18 H -0.252 1.252 19 H 0.051 0.949 20 H 0.090 0.910 21 H 0.056 0.944 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.341 0.659 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.019 0.981 31 H 0.018 0.982 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.769 6.455 -5.864 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.287 6.287 3 C -0.002 4.002 4 C -0.197 4.197 5 C -0.243 4.243 6 C -0.087 4.087 7 H 0.136 0.864 8 N -0.289 5.289 9 C -0.039 4.039 10 C -0.042 4.042 11 C -0.573 4.573 12 H 0.053 0.947 13 C -0.190 4.190 14 N -0.590 5.590 15 Si 0.775 3.225 16 H -0.189 1.189 17 H -0.207 1.207 18 H -0.176 1.176 19 H 0.070 0.930 20 H 0.109 0.891 21 H 0.075 0.925 22 H 0.106 0.894 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.140 0.860 26 H 0.112 0.888 27 H 0.161 0.839 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.768 5.961 -5.223 21.298 hybrid contribution 0.739 -0.118 -0.725 1.041 sum -19.029 5.844 -5.948 20.776 Atomic orbital electron populations 1.22983 0.80322 1.03382 1.00946 1.88024 1.20857 1.25414 1.94361 1.22481 0.92579 0.85508 0.99611 1.21822 1.00708 0.97127 1.00031 1.24252 1.04407 1.03272 0.92378 1.22965 0.91309 0.92827 1.01636 0.86377 1.60161 1.16513 1.25000 1.27222 1.21690 0.86835 0.97102 0.98317 1.19432 0.93473 0.95109 0.96233 1.21388 0.99047 0.96315 1.40501 0.94707 1.25965 0.94551 1.03612 0.94828 1.70052 1.08449 1.33359 1.47137 0.85626 0.79633 0.78375 0.78824 1.18944 1.20701 1.17591 0.93001 0.89136 0.92520 0.89413 0.89815 0.91708 0.86034 0.88759 0.83932 0.95906 0.92487 0.96244 0.96415 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.05 113.37 1.14 1.51 16 2 O -0.37 -10.59 10.71 -148.98 -1.60 -12.18 16 3 C 0.04 0.99 3.03 -10.80 -0.03 0.95 16 4 C -0.14 -2.46 9.49 71.98 0.68 -1.78 16 5 C -0.20 -4.62 9.82 30.59 0.30 -4.32 16 6 C 0.02 0.69 6.03 44.91 0.27 0.96 16 7 H 0.12 3.23 7.90 -2.39 -0.02 3.21 16 8 N -0.66 -23.83 6.55 -491.55 -3.22 -27.05 16 9 C 0.09 3.76 5.48 86.30 0.47 4.23 16 10 C 0.00 -0.23 4.30 29.85 0.13 -0.10 16 11 C -0.53 -31.92 9.66 25.60 0.25 -31.67 16 12 H 0.03 2.26 7.99 -2.91 -0.02 2.23 16 13 C 0.01 0.45 5.47 84.66 0.46 0.91 16 14 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 15 Si 0.95 45.97 27.47 68.60 1.88 47.85 16 16 H -0.26 -12.14 7.11 99.48 0.71 -11.44 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 19 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 20 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.06 0.91 6.47 -2.39 -0.02 0.90 16 22 H 0.09 1.20 7.90 -2.38 -0.02 1.19 16 23 H 0.08 1.20 5.78 -2.39 -0.01 1.18 16 24 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 25 H 0.12 2.09 8.05 -2.38 -0.02 2.07 16 26 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 27 H 0.34 11.80 8.52 -89.69 -0.76 11.03 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 31 H 0.02 0.84 7.57 -2.39 -0.02 0.83 16 32 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -69.50 267.25 1.31 -68.19 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.27 Total: 12.88 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.67 Total: -29.30 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.92 Total: -87.45 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -1.60 Total: -12.18 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -69.50 1.31 -68.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694441114.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.236 kcal (2) G-P(sol) polarization free energy of solvation -69.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds