Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99917 * 2 1 4 4 H 1.48501 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46759 * 299.99782 * 3 2 1 6 6 H 1.48493 * 109.47029 * 59.99530 * 3 2 1 7 7 C 1.37877 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00470 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99960 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.46974 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99950 * 180.02562 * 11 10 9 13 13 C 1.53787 * 113.61627 * 205.00092 * 12 11 10 14 14 C 1.53778 * 87.08020 * 219.93342 * 13 12 11 15 15 C 1.52999 * 113.61256 * 139.98118 * 14 13 12 16 16 O 1.42903 * 109.47256 * 176.53062 * 15 14 13 17 17 C 1.53778 * 87.17519 * 25.38811 * 14 13 12 18 18 H 0.96994 * 120.00483 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.46945 * 59.99531 * 9 7 2 20 20 H 1.08994 * 109.47051 * 300.00250 * 9 7 2 21 21 H 1.09002 * 109.47232 * 60.00079 * 10 9 7 22 22 H 1.09000 * 109.47329 * 300.00571 * 10 9 7 23 23 H 1.00897 * 111.00443 * 303.95239 * 11 10 9 24 24 H 1.09000 * 112.84928 * 336.19299 * 12 11 10 25 25 H 1.08995 * 113.61122 * 105.38319 * 13 12 11 26 26 H 1.08998 * 113.60857 * 334.48072 * 13 12 11 27 27 H 1.09000 * 113.61408 * 270.80005 * 14 13 12 28 28 H 1.08997 * 109.47286 * 56.52622 * 15 14 13 29 29 H 1.09008 * 109.47201 * 296.52402 * 15 14 13 30 30 H 0.96700 * 114.00311 * 180.02562 * 16 15 14 31 31 H 1.09001 * 113.61340 * 89.16095 * 17 14 13 32 32 H 1.08998 * 113.61572 * 220.06032 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5109 -4.9342 -0.0001 12 6 2.4354 -6.0758 0.0005 13 6 1.8312 -7.3583 -0.5955 14 6 2.5487 -8.1247 0.5281 15 6 1.7134 -9.2579 1.1272 16 8 2.4899 -9.9585 2.1010 17 6 2.4971 -6.8229 1.3452 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6242 -2.5567 0.8902 21 1 2.8721 -3.6043 0.8905 22 1 2.8721 -3.6043 -0.8894 23 1 0.8743 -4.9846 0.7810 24 1 3.4163 -5.8264 -0.4042 25 1 2.2040 -7.5942 -1.5922 26 1 0.7441 -7.4009 -0.5280 27 1 3.5600 -8.4365 0.2671 28 1 1.4149 -9.9464 0.3367 29 1 0.8245 -8.8423 1.6020 30 1 2.0226 -10.6925 2.5229 31 1 1.5925 -6.7191 1.9443 32 1 3.4067 -6.6275 1.9130 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698990665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -71.490452 kcal Electronic energy + Delta-G solvation = -12391.025988 eV Core-core repulsion = 10157.431961 eV Total energy + Delta-G solvation = -2233.594027 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39679 -37.47762 -36.19521 -34.46628 -31.02636 -28.29697 -26.56759 -25.96624 -22.63815 -22.37456 -20.44117 -18.52592 -18.15989 -16.72659 -16.71240 -16.32006 -15.85781 -15.22792 -14.83653 -14.26607 -14.15584 -13.47406 -13.35705 -12.97821 -12.87629 -12.67440 -12.50397 -12.02187 -12.01840 -11.51987 -11.41332 -11.33440 -11.05753 -10.71925 -10.57507 -9.19068 -8.20979 -6.32634 1.40329 1.40859 1.54325 2.40418 3.12463 3.17415 3.51106 3.67465 3.72740 4.04436 4.12703 4.42586 4.50042 4.54602 4.62483 4.69356 4.82288 4.83203 4.90781 5.05936 5.12427 5.26880 5.39825 5.49434 5.67956 5.79814 6.16380 6.31191 6.56016 6.84783 6.93675 7.36853 8.91490 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.094456 B = 0.005170 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.363838 B = 5414.543753 C = 5465.070327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.084 3.916 11 N -0.685 5.685 12 C 0.055 3.945 13 C -0.110 4.110 14 C -0.103 4.103 15 C 0.087 3.913 16 O -0.595 6.595 17 C -0.157 4.157 18 H 0.264 0.736 19 H -0.005 1.005 20 H -0.009 1.009 21 H 0.017 0.983 22 H 0.057 0.943 23 H 0.340 0.660 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -17.123 1.995 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.315 5.315 12 C -0.056 4.056 13 C -0.148 4.148 14 C -0.122 4.122 15 C 0.010 3.990 16 O -0.403 6.403 17 C -0.197 4.197 18 H 0.073 0.927 19 H 0.013 0.987 20 H 0.010 0.990 21 H 0.035 0.965 22 H 0.075 0.925 23 H 0.158 0.842 24 H 0.107 0.893 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.245 0.755 31 H 0.101 0.899 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.916 -16.567 1.126 17.061 hybrid contribution 0.006 0.686 1.087 1.285 sum 3.922 -15.881 2.213 16.507 Atomic orbital electron populations 1.70109 1.07838 1.27786 1.51477 1.25980 0.95775 1.03396 0.94555 0.85357 0.78995 0.78559 0.77861 1.18623 1.20255 1.20244 1.21652 0.93529 0.92309 1.50898 0.92225 1.18944 0.94352 0.92385 0.95064 1.21800 0.95609 0.88611 0.98514 1.60486 1.19680 1.01622 1.49701 1.23169 0.95867 0.89870 0.96663 1.23004 1.00805 0.93126 0.97906 1.22326 1.00419 0.92893 0.96585 1.22186 0.92791 0.93238 0.90797 1.86445 1.45182 1.50655 1.58064 1.23730 1.02027 0.96925 0.96986 0.92697 0.98682 0.99026 0.96499 0.92497 0.84178 0.89263 0.90400 0.89371 0.88858 0.91958 0.93054 0.75472 0.89934 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.64 5.23 29.85 0.16 1.80 16 10 C 0.08 3.63 5.47 86.30 0.47 4.10 16 11 N -0.69 -24.84 6.62 -488.55 -3.23 -28.08 16 12 C 0.05 1.57 4.18 45.50 0.19 1.76 16 13 C -0.11 -2.53 7.44 31.12 0.23 -2.29 16 14 C -0.10 -2.21 4.00 -10.27 -0.04 -2.25 16 15 C 0.09 1.55 6.87 71.98 0.49 2.05 16 16 O -0.59 -11.17 13.66 -148.98 -2.04 -13.21 16 17 C -0.16 -3.98 7.26 31.18 0.23 -3.76 16 18 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 19 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 20 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 21 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 22 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 23 H 0.34 11.97 8.21 -89.70 -0.74 11.23 16 24 H 0.09 2.61 7.87 -2.39 -0.02 2.59 16 25 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 2.00 8.10 -2.39 -0.02 1.98 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.87 7.88 -2.38 -0.02 0.85 16 30 H 0.40 3.56 9.12 -74.06 -0.68 2.88 16 31 H 0.08 2.06 7.61 -2.39 -0.02 2.05 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -67.21 269.41 -0.85 -68.06 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -0.31 Total: 13.35 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 2.43 Total: -29.64 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.95 Total: -85.36 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -2.04 Total: -13.21 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.21 -0.85 -68.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698990665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.431 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds