Wall clock time and date at job start Mon Mar 30 2020 02:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47127 * 2 1 4 4 H 1.09000 * 110.56670 * 307.67577 * 3 2 1 5 5 C 1.54482 * 110.51517 * 70.35604 * 3 2 1 6 6 O 1.44423 * 104.80551 * 142.62420 * 5 3 2 7 7 C 1.44426 * 105.27561 * 319.48637 * 6 5 3 8 8 C 1.54489 * 104.80169 * 40.51310 * 7 6 5 9 9 H 1.09000 * 110.62534 * 94.71929 * 8 7 6 10 10 N 1.46898 * 110.51169 * 217.37792 * 8 7 6 11 11 C 1.46903 * 110.99849 * 269.64152 * 10 8 7 12 12 C 1.50694 * 109.47066 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 H 1.08993 * 109.47286 * 300.00265 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00582 * 1 2 3 22 22 H 1.09002 * 109.47412 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47286 * 239.99734 * 2 1 3 24 24 H 1.09007 * 109.46632 * 119.99837 * 2 1 3 25 25 H 1.09001 * 110.37399 * 261.45753 * 5 3 2 26 26 H 1.08999 * 110.36961 * 23.67616 * 5 3 2 27 27 H 1.09004 * 110.37656 * 281.68569 * 7 6 5 28 28 H 1.08999 * 110.37090 * 159.34434 * 7 6 5 29 29 H 1.00895 * 110.99776 * 33.59456 * 10 8 7 30 30 H 1.09007 * 109.47052 * 59.99769 * 11 10 8 31 31 H 1.09003 * 109.46808 * 300.00462 * 11 10 8 32 32 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5796 2.0114 -0.8077 5 6 1.7619 2.1150 1.3626 6 8 2.9177 2.9458 1.6069 7 6 4.0496 2.1594 1.1753 8 6 3.5797 1.4723 -0.1261 9 1 3.8803 2.0540 -0.9975 10 7 4.1158 0.1072 -0.2100 11 6 5.4130 0.0926 -0.8992 12 6 5.9301 -1.3213 -0.9666 13 1 5.3531 -2.1283 -0.5397 14 6 7.1405 -1.5846 -1.5722 15 7 7.8434 -0.6018 -2.0916 16 14 7.7818 -3.3371 -1.6550 17 1 9.0931 -3.3519 -2.3518 18 1 7.9460 -3.8696 -0.2786 19 1 6.8158 -4.1829 -2.4011 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 0.8606 2.7255 1.3076 26 1 1.6618 1.3618 2.1441 27 1 4.3024 1.4130 1.9284 28 1 4.9057 2.8040 0.9763 29 1 4.1882 -0.3097 0.7059 30 1 6.1223 0.7136 -0.3520 31 1 5.2921 0.4834 -1.9096 32 1 8.6951 -0.7870 -2.5174 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699431319.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:39 Heat of formation + Delta-G solvation = -77.644420 kcal Electronic energy + Delta-G solvation = -13083.932750 eV Core-core repulsion = 10850.071867 eV Total energy + Delta-G solvation = -2233.860883 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.79390 -36.75141 -35.29252 -34.19259 -30.57129 -29.11070 -27.52305 -24.76618 -23.74677 -23.06486 -20.47968 -18.62376 -17.50806 -16.80578 -16.69122 -16.37668 -15.57482 -14.95119 -14.63939 -14.50065 -14.17625 -13.71350 -13.36832 -13.18837 -12.93081 -12.61006 -12.50426 -12.17444 -11.96608 -11.78818 -11.40646 -11.32257 -11.17854 -10.81079 -10.65513 -9.09073 -8.22704 -6.33770 1.41439 1.44588 1.52545 2.39585 2.94830 3.10977 3.58057 3.78488 3.81531 3.96915 4.14933 4.35170 4.47892 4.59837 4.64275 4.75958 4.80220 4.93863 4.99697 5.07991 5.17778 5.26003 5.37240 5.49503 5.60669 5.68977 5.79385 6.01889 6.42069 6.68980 6.87878 7.37191 8.88602 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045765 B = 0.008269 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.675718 B = 3385.369242 C = 3800.660083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.107 4.107 4 H 0.085 0.915 5 C 0.049 3.951 6 O -0.394 6.394 7 C 0.025 3.975 8 C 0.051 3.949 9 H 0.066 0.934 10 N -0.663 5.663 11 C 0.208 3.792 12 C -0.535 4.535 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.972 3.028 17 H -0.284 1.284 18 H -0.266 1.266 19 H -0.269 1.269 20 H 0.063 0.937 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.336 0.664 30 H -0.037 1.037 31 H -0.002 1.002 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 2.203 5.856 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.130 4.130 3 C -0.126 4.126 4 H 0.103 0.897 5 C -0.028 4.028 6 O -0.312 6.312 7 C -0.054 4.054 8 C -0.060 4.060 9 H 0.084 0.916 10 N -0.294 5.294 11 C 0.081 3.919 12 C -0.573 4.573 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.796 3.204 17 H -0.209 1.209 18 H -0.191 1.191 19 H -0.193 1.193 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.155 0.845 30 H -0.019 1.019 31 H 0.016 0.984 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.302 2.301 5.286 13.585 hybrid contribution 1.469 -0.348 0.203 1.523 sum -10.832 1.953 5.489 12.300 Atomic orbital electron populations 1.21818 0.94763 1.01945 1.02036 1.21176 0.95391 0.94103 1.02376 1.22554 0.93299 0.98376 0.98385 0.89704 1.23714 0.89359 0.94298 0.95386 1.89051 1.16509 1.40282 1.85379 1.24142 0.90150 0.95417 0.95667 1.23008 0.96147 0.90038 0.96834 0.91600 1.60674 1.28032 1.16591 1.24078 1.19241 0.84692 0.95677 0.92329 1.21512 1.04260 0.94116 1.37413 0.91561 1.25947 0.96966 1.01973 0.94832 1.70086 1.14450 1.33830 1.39083 0.85399 0.77291 0.78989 0.78699 1.20945 1.19068 1.19350 0.91799 0.92685 0.92459 0.92507 0.92521 0.87133 0.91352 0.92012 0.90041 0.84520 1.01908 0.98421 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.79 71.98 0.70 -2.31 16 2 C -0.09 -2.49 4.36 30.59 0.13 -2.36 16 3 C -0.11 -2.98 3.11 -9.78 -0.03 -3.01 16 4 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 5 C 0.05 1.20 6.51 72.49 0.47 1.67 16 6 O -0.39 -12.33 11.65 -148.98 -1.74 -14.07 16 7 C 0.02 0.83 7.31 72.49 0.53 1.36 16 8 C 0.05 1.82 3.43 45.94 0.16 1.97 16 9 H 0.07 2.56 7.82 -2.39 -0.02 2.54 16 10 N -0.66 -27.45 4.48 -490.30 -2.20 -29.64 16 11 C 0.21 10.99 5.30 85.55 0.45 11.44 16 12 C -0.53 -30.08 9.32 25.60 0.24 -29.84 16 13 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 14 C 0.00 0.06 5.46 84.66 0.46 0.52 16 15 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 16 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H 0.06 1.09 7.63 -2.39 -0.02 1.07 16 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.86 7.63 -2.39 -0.02 1.84 16 24 H 0.06 1.55 7.69 -2.38 -0.02 1.53 16 25 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 1.55 7.74 -2.39 -0.02 1.53 16 27 H 0.06 1.99 7.55 -2.38 -0.02 1.98 16 28 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.34 13.22 7.86 -89.70 -0.71 12.52 16 30 H -0.04 -2.08 8.14 -2.38 -0.02 -2.10 16 31 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -62.10 261.85 1.88 -60.22 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.38 Total: 14.12 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 3.12 Total: -20.55 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.91 Total: -85.73 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: -1.74 Total: -14.07 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -62.10 1.88 -60.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699431319.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.423 kcal (2) G-P(sol) polarization free energy of solvation -62.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds