Wall clock time and date at job start Mon Mar 30 2020 02:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.53006 * 109.46593 * 120.00056 * 2 1 3 5 5 H 1.09001 * 110.45476 * 302.60117 * 4 2 1 6 6 C 1.54478 * 110.51511 * 65.35874 * 4 2 1 7 7 O 1.44421 * 104.80540 * 142.62317 * 6 4 2 8 8 C 1.44428 * 105.27352 * 319.48725 * 7 6 4 9 9 C 1.54479 * 104.80406 * 40.51412 * 8 7 6 10 10 H 1.09005 * 110.62609 * 217.32508 * 9 8 7 11 11 N 1.46490 * 110.51433 * 94.66613 * 9 8 7 12 12 C 1.36935 * 120.00121 * 90.35339 * 11 9 8 13 13 H 1.07997 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00401 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46653 * 299.99639 * 16 14 12 19 19 H 1.48495 * 109.47483 * 60.00002 * 16 14 12 20 20 H 1.09004 * 109.47250 * 60.00190 * 1 2 3 21 21 H 1.09004 * 109.47692 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47194 * 300.00321 * 1 2 3 23 23 H 1.08999 * 109.47194 * 239.99678 * 2 1 3 24 24 H 1.09007 * 109.46926 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47230 * 299.99720 * 3 2 1 26 26 H 1.08999 * 109.47271 * 59.99725 * 3 2 1 27 27 H 1.09007 * 110.36697 * 261.45430 * 6 4 2 28 28 H 1.08997 * 110.37087 * 23.67865 * 6 4 2 29 29 H 1.08998 * 110.36926 * 281.67949 * 8 7 6 30 30 H 1.08997 * 110.37316 * 159.34415 * 8 7 6 31 31 H 0.97000 * 120.00577 * 270.35939 * 11 9 8 32 32 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6480 -0.2475 2.1494 6 6 1.6515 -2.2159 1.2079 7 8 2.7843 -2.9074 1.7774 8 6 3.9469 -2.2368 1.2441 9 6 3.5847 -0.7353 1.2737 10 1 3.9851 -0.2264 0.3969 11 7 4.0844 -0.1108 2.5010 12 6 5.3359 0.4445 2.5261 13 1 5.9543 0.4224 1.6411 14 6 5.8097 1.0359 3.6892 15 7 5.0561 1.0623 4.7681 16 14 7.5166 1.7940 3.7232 17 1 7.7822 2.3550 5.0723 18 1 8.5275 0.7512 3.4134 19 1 7.5971 2.8778 2.7113 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 0.7584 -2.3926 1.8074 28 1 1.4868 -2.5368 0.1793 29 1 4.1362 -2.5614 0.2209 30 1 4.8172 -2.4296 1.8713 31 1 3.5290 -0.0907 3.2959 32 1 4.1697 0.6689 4.7503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699721756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:11 Heat of formation + Delta-G solvation = -49.786714 kcal Electronic energy + Delta-G solvation = -13425.080296 eV Core-core repulsion = 11192.427413 eV Total energy + Delta-G solvation = -2232.652883 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.33505 -35.39741 -34.39728 -31.14438 -28.69295 -27.46380 -26.68024 -23.57344 -22.41775 -20.71665 -19.50569 -17.23069 -16.05683 -15.45263 -15.12417 -14.30510 -13.86554 -13.58543 -13.39433 -12.94962 -12.68219 -12.13502 -11.98855 -11.42703 -11.12574 -10.94307 -10.65198 -10.57701 -10.41516 -10.24262 -10.09613 -9.97004 -9.43709 -9.15754 -8.82110 -7.02443 -6.10773 -3.10729 3.51103 3.54600 3.72178 4.49410 4.65621 4.94019 5.00837 5.17591 5.43237 5.48404 5.55740 5.65406 5.70306 5.79673 5.85288 5.95999 6.03457 6.08840 6.12241 6.22178 6.25661 6.35033 6.46484 6.64524 6.70348 6.78127 7.35309 7.79312 8.75159 9.21724 10.08180 10.23645 11.37416 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040297 B = 0.010333 C = 0.009148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.666503 B = 2709.028318 C = 3060.067812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.127 4.127 5 H 0.083 0.917 6 C 0.051 3.949 7 O -0.380 6.380 8 C 0.017 3.983 9 C 0.160 3.840 10 H 0.067 0.933 11 N -0.724 5.724 12 C -0.335 4.335 13 H 0.064 0.936 14 C -0.043 4.043 15 N -0.941 5.941 16 Si 1.079 2.921 17 H -0.285 1.285 18 H -0.295 1.295 19 H -0.295 1.295 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.368 0.632 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 -2.677 -9.948 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.202 4.202 4 C -0.147 4.147 5 H 0.101 0.899 6 C -0.026 4.026 7 O -0.299 6.299 8 C -0.063 4.063 9 C 0.049 3.951 10 H 0.085 0.915 11 N -0.366 5.366 12 C -0.466 4.466 13 H 0.082 0.918 14 C -0.241 4.241 15 N -0.586 5.586 16 Si 0.910 3.090 17 H -0.210 1.210 18 H -0.223 1.223 19 H -0.223 1.223 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.112 0.888 31 H 0.202 0.798 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.859 -2.023 -9.006 10.933 hybrid contribution -1.256 -0.709 -0.922 1.712 sum -7.115 -2.732 -9.928 12.516 Atomic orbital electron populations 1.21869 0.95613 1.01338 1.01575 1.21053 0.95147 0.96732 0.97128 1.21836 1.02259 0.95195 1.00938 1.22935 0.97504 0.95450 0.98825 0.89900 1.23373 0.90457 0.91141 0.97679 1.89076 1.15319 1.55913 1.69572 1.24432 0.89403 0.95187 0.97256 1.21543 0.90415 0.91495 0.91687 0.91549 1.42425 1.17109 1.68217 1.08845 1.20036 0.92827 1.34267 0.99447 0.91764 1.25769 1.05913 1.00335 0.92075 1.70870 1.10981 1.47732 1.29045 0.83256 0.74269 0.75815 0.75660 1.21027 1.22259 1.22267 0.92963 0.92916 0.92676 0.91556 0.91591 0.93535 0.92666 0.90155 0.93054 0.94035 0.88791 0.79775 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.03 37.16 0.34 -1.38 16 2 C -0.08 -1.15 2.25 -90.62 -0.20 -1.36 16 3 C -0.15 -2.19 8.94 37.16 0.33 -1.86 16 4 C -0.13 -2.15 2.44 -89.05 -0.22 -2.37 16 5 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 6 C 0.05 0.81 6.27 37.93 0.24 1.04 16 7 O -0.38 -7.51 11.65 -35.23 -0.41 -7.92 16 8 C 0.02 0.33 7.35 37.93 0.28 0.61 16 9 C 0.16 3.25 2.89 -66.37 -0.19 3.06 16 10 H 0.07 1.35 6.38 -51.93 -0.33 1.02 16 11 N -0.72 -18.26 5.13 -51.91 -0.27 -18.53 16 12 C -0.33 -9.36 9.96 -15.06 -0.15 -9.51 16 13 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 14 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 15 N -0.94 -29.31 13.70 55.49 0.76 -28.55 16 16 Si 1.08 25.96 29.92 -169.99 -5.09 20.88 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.56 7.45 -51.93 -0.39 0.18 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 24 H 0.07 1.14 6.52 -51.93 -0.34 0.80 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.05 0.71 7.82 -51.93 -0.41 0.31 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.09 2.06 8.06 -51.93 -0.42 1.64 16 31 H 0.37 9.79 6.41 -40.82 -0.26 9.52 16 32 H 0.26 7.90 6.77 -40.82 -0.28 7.62 16 LS Contribution 258.22 15.07 3.89 3.89 Total: -1.00 -30.85 258.22 -5.77 -36.62 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.98 Total: 6.70 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 0.33 Total: -13.10 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.49 Total: -47.08 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.41 Total: -7.92 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.85 -5.77 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699721756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.165 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds