Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 C 1.53006 * 109.46593 * 120.00056 * 2 1 3 5 5 H 1.09001 * 110.45476 * 302.60117 * 4 2 1 6 6 C 1.54478 * 110.51511 * 65.35874 * 4 2 1 7 7 O 1.44421 * 104.80540 * 142.62317 * 6 4 2 8 8 C 1.44428 * 105.27352 * 319.48725 * 7 6 4 9 9 C 1.54479 * 104.80406 * 40.51412 * 8 7 6 10 10 H 1.09005 * 110.62609 * 217.32508 * 9 8 7 11 11 N 1.46490 * 110.51433 * 94.66613 * 9 8 7 12 12 C 1.36935 * 120.00121 * 90.35339 * 11 9 8 13 13 H 1.07997 * 120.00139 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00401 * 180.02562 * 12 11 9 15 15 N 1.31624 * 119.99569 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00172 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46653 * 299.99639 * 16 14 12 19 19 H 1.48495 * 109.47483 * 60.00002 * 16 14 12 20 20 H 1.09004 * 109.47250 * 60.00190 * 1 2 3 21 21 H 1.09004 * 109.47692 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47194 * 300.00321 * 1 2 3 23 23 H 1.08999 * 109.47194 * 239.99678 * 2 1 3 24 24 H 1.09007 * 109.46926 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47230 * 299.99720 * 3 2 1 26 26 H 1.08999 * 109.47271 * 59.99725 * 3 2 1 27 27 H 1.09007 * 110.36697 * 261.45430 * 6 4 2 28 28 H 1.08997 * 110.37087 * 23.67865 * 6 4 2 29 29 H 1.08998 * 110.36926 * 281.67949 * 8 7 6 30 30 H 1.08997 * 110.37316 * 159.34415 * 8 7 6 31 31 H 0.97000 * 120.00577 * 270.35939 * 11 9 8 32 32 H 0.97001 * 119.99885 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6480 -0.2475 2.1494 6 6 1.6515 -2.2159 1.2079 7 8 2.7843 -2.9074 1.7774 8 6 3.9469 -2.2368 1.2441 9 6 3.5847 -0.7353 1.2737 10 1 3.9851 -0.2264 0.3969 11 7 4.0844 -0.1108 2.5010 12 6 5.3359 0.4445 2.5261 13 1 5.9543 0.4224 1.6411 14 6 5.8097 1.0359 3.6892 15 7 5.0561 1.0623 4.7681 16 14 7.5166 1.7940 3.7232 17 1 7.7822 2.3550 5.0723 18 1 8.5275 0.7512 3.4134 19 1 7.5971 2.8778 2.7113 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.8933 -0.5139 -0.8899 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 0.7584 -2.3926 1.8074 28 1 1.4868 -2.5368 0.1793 29 1 4.1362 -2.5614 0.2209 30 1 4.8172 -2.4296 1.8713 31 1 3.5290 -0.0907 3.2959 32 1 4.1697 0.6689 4.7503 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699721756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = -70.777794 kcal Electronic energy + Delta-G solvation = -13425.990537 eV Core-core repulsion = 11192.427413 eV Total energy + Delta-G solvation = -2233.563124 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.80092 -36.75812 -36.28753 -33.05566 -30.11654 -29.10403 -27.86756 -25.67092 -23.75395 -22.26470 -20.88031 -19.28043 -17.64517 -16.88814 -16.61135 -15.99554 -15.70600 -15.29784 -14.75552 -14.29178 -13.95085 -13.50553 -13.07600 -12.98454 -12.80427 -12.58708 -12.31360 -12.20545 -11.90565 -11.73068 -11.53494 -11.36359 -11.17591 -11.08089 -10.65039 -9.10882 -8.40096 -5.33894 1.56974 1.67154 1.83191 2.70153 3.07497 3.39702 3.56065 3.67081 3.90795 4.04027 4.21344 4.25716 4.40217 4.43460 4.59023 4.71680 4.78177 4.83153 4.84341 4.94773 5.01160 5.05527 5.19265 5.25636 5.46047 5.48179 5.59154 5.90368 6.47299 7.07049 7.96605 8.10417 9.11374 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040297 B = 0.010333 C = 0.009148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.666503 B = 2709.028318 C = 3060.067812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.142 4.142 4 C -0.120 4.120 5 H 0.060 0.940 6 C 0.051 3.949 7 O -0.403 6.403 8 C 0.024 3.976 9 C 0.151 3.849 10 H 0.068 0.932 11 N -0.738 5.738 12 C -0.329 4.329 13 H 0.069 0.931 14 C -0.106 4.106 15 N -0.976 5.976 16 Si 1.127 2.873 17 H -0.295 1.295 18 H -0.278 1.278 19 H -0.276 1.276 20 H 0.071 0.929 21 H 0.067 0.933 22 H 0.046 0.954 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.036 0.964 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.357 0.643 32 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 -3.076 -12.083 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 C -0.200 4.200 4 C -0.139 4.139 5 H 0.079 0.921 6 C -0.025 4.025 7 O -0.323 6.323 8 C -0.056 4.056 9 C 0.041 3.959 10 H 0.086 0.914 11 N -0.379 5.379 12 C -0.460 4.460 13 H 0.087 0.913 14 C -0.297 4.297 15 N -0.624 5.624 16 Si 0.952 3.048 17 H -0.221 1.221 18 H -0.204 1.204 19 H -0.202 1.202 20 H 0.090 0.910 21 H 0.086 0.914 22 H 0.065 0.935 23 H 0.102 0.898 24 H 0.057 0.943 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.189 0.811 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.486 -2.451 -11.203 13.175 hybrid contribution -1.134 -0.626 -0.329 1.336 sum -7.620 -3.077 -11.531 14.160 Atomic orbital electron populations 1.21832 0.93333 1.02590 1.02177 1.21057 0.96958 0.95457 0.96022 1.21805 1.00407 0.96418 1.01336 1.22857 0.94663 0.96848 0.99568 0.92122 1.23609 0.89653 0.89587 0.99664 1.89049 1.16249 1.56416 1.70541 1.24233 0.88715 0.94361 0.98255 1.21815 0.92937 0.91547 0.89581 0.91375 1.42615 1.16372 1.68781 1.10113 1.20382 0.93710 1.32676 0.99264 0.91302 1.27207 1.09055 1.01451 0.91950 1.70989 1.10996 1.50001 1.30373 0.82642 0.70671 0.75955 0.75565 1.22072 1.20422 1.20156 0.91049 0.91357 0.93471 0.89803 0.94328 0.90873 0.94525 0.88471 0.89888 0.90794 0.91839 0.81106 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.03 71.98 0.65 -2.19 16 2 C -0.08 -1.94 2.25 -10.79 -0.02 -1.97 16 3 C -0.14 -4.11 8.94 71.98 0.64 -3.47 16 4 C -0.12 -3.89 2.44 -9.77 -0.02 -3.91 16 5 H 0.06 2.25 7.70 -2.39 -0.02 2.23 16 6 C 0.05 1.49 6.27 72.48 0.45 1.94 16 7 O -0.40 -15.34 11.65 -148.98 -1.74 -17.08 16 8 C 0.02 0.91 7.35 72.48 0.53 1.44 16 9 C 0.15 6.06 2.89 46.01 0.13 6.19 16 10 H 0.07 2.71 6.38 -2.38 -0.02 2.70 16 11 N -0.74 -38.01 5.13 -318.15 -1.63 -39.64 16 12 C -0.33 -18.60 9.96 84.03 0.84 -17.76 16 13 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 14 C -0.11 -6.22 5.50 84.86 0.47 -5.75 16 15 N -0.98 -62.44 13.70 21.65 0.30 -62.15 16 16 Si 1.13 52.51 29.92 68.60 2.05 54.56 16 17 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 20 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.07 1.17 7.45 -2.38 -0.02 1.15 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 24 H 0.04 1.30 6.52 -2.38 -0.02 1.29 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.08 1.93 7.82 -2.39 -0.02 1.91 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.81 8.06 -2.39 -0.02 2.79 16 31 H 0.36 19.73 6.41 -92.71 -0.59 19.14 16 32 H 0.24 15.59 6.77 -92.71 -0.63 14.96 16 Total: -1.00 -67.36 258.22 3.29 -64.08 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.64 Total: 25.70 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.67 Total: -25.48 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -1.33 Total: -101.79 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -1.74 Total: -17.08 kcal Atomic # 14 Polarization: 52.51 SS G_CDS: 2.05 Total: 54.56 kcal Total: -67.36 3.29 -64.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699721756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.702 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds