Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47043 * 2 1 4 4 C 1.53003 * 109.46886 * 240.00256 * 2 1 3 5 5 H 1.09001 * 110.45606 * 64.00532 * 4 2 1 6 6 C 1.54476 * 110.50883 * 301.25031 * 4 2 1 7 7 O 1.44428 * 104.80223 * 217.37706 * 6 4 2 8 8 C 1.44427 * 105.27449 * 40.51415 * 7 6 4 9 9 C 1.54478 * 104.80326 * 319.48787 * 8 7 6 10 10 H 1.08999 * 110.50888 * 265.33894 * 9 8 7 11 11 N 1.46497 * 110.51179 * 142.62575 * 9 8 7 12 12 C 1.36928 * 120.00208 * 96.81409 * 11 9 8 13 13 H 1.08002 * 120.00129 * 0.02562 * 12 11 9 14 14 C 1.38812 * 120.00127 * 179.97438 * 12 11 9 15 15 N 1.31623 * 120.00062 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00069 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47179 * 90.00214 * 16 14 12 18 18 H 1.48499 * 109.47535 * 210.00452 * 16 14 12 19 19 H 1.48507 * 109.47249 * 330.00616 * 16 14 12 20 20 H 1.09009 * 109.47134 * 299.99887 * 1 2 3 21 21 H 1.09003 * 109.47016 * 59.99777 * 1 2 3 22 22 H 1.08999 * 109.47063 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47533 * 119.99965 * 2 1 3 24 24 H 1.09005 * 109.46938 * 306.60309 * 3 2 1 25 25 H 1.09000 * 109.47174 * 66.60226 * 3 2 1 26 26 H 1.08996 * 109.46751 * 186.60330 * 3 2 1 27 27 H 1.09004 * 110.37864 * 336.20809 * 6 4 2 28 28 H 1.08995 * 110.37449 * 98.54930 * 6 4 2 29 29 H 1.09002 * 110.37095 * 200.65489 * 8 7 6 30 30 H 1.09004 * 110.46658 * 78.36411 * 8 7 6 31 31 H 0.97006 * 119.99775 * 276.81074 * 11 9 8 32 32 H 0.97002 * 119.99898 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7449 -0.1804 -2.1485 6 6 1.5127 -2.1726 -1.2895 7 8 2.6065 -2.9479 -1.8266 8 6 3.7946 -2.4102 -1.2060 9 6 3.5757 -0.8811 -1.1931 10 1 4.0397 -0.4215 -2.0658 11 7 4.1079 -0.2968 0.0404 12 6 5.3598 0.2578 0.0507 13 1 5.9548 0.2649 -0.8506 14 6 5.8639 0.8120 1.2194 15 7 5.1386 0.8039 2.3177 16 14 7.5720 1.5680 1.2336 17 1 7.4787 3.0084 0.8848 18 1 8.1659 1.4238 2.5870 19 1 8.4294 0.8727 0.2401 20 1 -0.3634 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 0.8899 24 1 1.5833 1.9894 -0.8250 25 1 1.7763 1.9211 0.9432 26 1 3.1235 1.4448 -0.1182 27 1 1.2633 -2.5138 -0.2847 28 1 0.6422 -2.2422 -1.9417 29 1 4.6771 -2.6623 -1.7941 30 1 3.8972 -2.7875 -0.1885 31 1 3.5734 -0.3027 0.8499 32 1 5.4910 1.1908 3.1345 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699721759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = -36.673765 kcal Electronic energy + Delta-G solvation = -13640.577864 eV Core-core repulsion = 11408.493601 eV Total energy + Delta-G solvation = -2232.084262 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.34489 -35.52641 -33.75278 -31.16047 -28.74634 -27.32967 -26.45302 -23.56468 -22.26440 -21.09235 -18.61516 -17.42115 -15.74177 -15.35153 -14.86650 -14.30808 -13.87761 -13.36683 -12.95316 -12.94119 -12.21783 -11.97329 -11.64204 -11.55823 -11.02780 -10.79732 -10.72245 -10.51958 -10.24645 -10.13100 -9.94190 -9.75680 -9.52140 -9.24856 -8.81917 -6.95897 -5.83000 -3.12245 3.40366 3.46489 3.47457 4.48018 4.62680 5.18390 5.22611 5.42231 5.52306 5.67921 5.69355 5.78708 5.90626 5.99638 6.06234 6.21677 6.23873 6.37297 6.40052 6.45994 6.53106 6.61082 6.77591 6.87497 7.00448 7.37190 7.53885 7.67271 8.35501 9.47325 10.02072 10.37610 11.38714 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039832 B = 0.011771 C = 0.009793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.785496 B = 2378.168901 C = 2858.501530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.159 4.159 4 C -0.128 4.128 5 H 0.074 0.926 6 C 0.052 3.948 7 O -0.391 6.391 8 C 0.020 3.980 9 C 0.151 3.849 10 H 0.066 0.934 11 N -0.711 5.711 12 C -0.249 4.249 13 H 0.071 0.929 14 C -0.008 4.008 15 N -0.929 5.929 16 Si 0.906 3.094 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.282 1.282 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.110 0.890 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.391 0.609 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.073 -2.204 -5.142 9.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.216 4.216 4 C -0.148 4.148 5 H 0.093 0.907 6 C -0.025 4.025 7 O -0.309 6.309 8 C -0.060 4.060 9 C 0.039 3.961 10 H 0.085 0.915 11 N -0.355 5.355 12 C -0.379 4.379 13 H 0.089 0.911 14 C -0.205 4.205 15 N -0.576 5.576 16 Si 0.737 3.263 17 H -0.217 1.217 18 H -0.218 1.218 19 H -0.208 1.208 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.129 0.871 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.901 -2.307 -5.300 9.002 hybrid contribution 0.765 0.557 0.536 1.087 sum -6.137 -1.750 -4.763 7.963 Atomic orbital electron populations 1.21924 0.96613 1.00777 1.01177 1.20873 0.93639 0.97631 0.97261 1.22198 1.06358 0.93714 0.99363 1.22842 0.97505 0.95492 0.98937 0.90723 1.23395 0.90445 0.90412 0.98234 1.89006 1.16703 1.58248 1.66979 1.24435 0.87300 0.96626 0.97592 1.21540 0.91189 0.91527 0.91835 0.91543 1.42771 1.17125 1.68161 1.07433 1.19283 0.92289 1.30559 0.95811 0.91084 1.24728 0.98439 1.01555 0.95748 1.69659 1.37117 1.50408 1.00437 0.86211 0.84180 0.79145 0.76759 1.21684 1.21803 1.20755 0.93049 0.93266 0.93342 0.90888 0.95131 0.93948 0.87124 0.92806 0.90291 0.90202 0.92282 0.77083 0.93406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.94 37.16 0.33 -1.75 16 2 C -0.08 -1.30 1.84 -90.62 -0.17 -1.47 16 3 C -0.16 -3.04 8.63 37.16 0.32 -2.72 16 4 C -0.13 -2.19 2.68 -89.05 -0.24 -2.43 16 5 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 6 C 0.05 0.84 6.09 37.93 0.23 1.07 16 7 O -0.39 -7.23 11.65 -35.23 -0.41 -7.64 16 8 C 0.02 0.38 7.35 37.93 0.28 0.66 16 9 C 0.15 3.02 3.55 -66.36 -0.24 2.78 16 10 H 0.07 1.35 8.04 -51.93 -0.42 0.93 16 11 N -0.71 -16.88 2.79 -51.91 -0.14 -17.02 16 12 C -0.25 -6.58 9.42 -15.06 -0.14 -6.72 16 13 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 14 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 15 N -0.93 -26.85 13.06 55.49 0.72 -26.12 16 16 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.62 7.03 -51.93 -0.37 0.25 16 23 H 0.07 1.42 6.52 -51.93 -0.34 1.09 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.11 2.53 5.15 -51.93 -0.27 2.26 16 27 H 0.05 0.85 7.56 -51.93 -0.39 0.46 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 31 H 0.39 9.77 4.94 -40.82 -0.20 9.57 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 252.80 15.07 3.81 3.81 Total: -1.00 -27.81 252.80 -5.67 -33.47 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.91 Total: 7.60 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 0.28 Total: -10.89 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.58 Total: -43.15 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.41 Total: -7.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.81 -5.67 -33.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699721759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.202 kcal (2) G-P(sol) polarization free energy of solvation -27.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds