Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47043 * 2 1 4 4 C 1.53003 * 109.46886 * 240.00256 * 2 1 3 5 5 H 1.09001 * 110.45606 * 64.00532 * 4 2 1 6 6 C 1.54476 * 110.50883 * 301.25031 * 4 2 1 7 7 O 1.44428 * 104.80223 * 217.37706 * 6 4 2 8 8 C 1.44427 * 105.27449 * 40.51415 * 7 6 4 9 9 C 1.54478 * 104.80326 * 319.48787 * 8 7 6 10 10 H 1.08999 * 110.50888 * 265.33894 * 9 8 7 11 11 N 1.46497 * 110.51179 * 142.62575 * 9 8 7 12 12 C 1.36928 * 120.00208 * 96.81409 * 11 9 8 13 13 H 1.08002 * 120.00129 * 0.02562 * 12 11 9 14 14 C 1.38812 * 120.00127 * 179.97438 * 12 11 9 15 15 N 1.31623 * 120.00062 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00069 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47179 * 90.00214 * 16 14 12 18 18 H 1.48499 * 109.47535 * 210.00452 * 16 14 12 19 19 H 1.48507 * 109.47249 * 330.00616 * 16 14 12 20 20 H 1.09009 * 109.47134 * 299.99887 * 1 2 3 21 21 H 1.09003 * 109.47016 * 59.99777 * 1 2 3 22 22 H 1.08999 * 109.47063 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47533 * 119.99965 * 2 1 3 24 24 H 1.09005 * 109.46938 * 306.60309 * 3 2 1 25 25 H 1.09000 * 109.47174 * 66.60226 * 3 2 1 26 26 H 1.08996 * 109.46751 * 186.60330 * 3 2 1 27 27 H 1.09004 * 110.37864 * 336.20809 * 6 4 2 28 28 H 1.08995 * 110.37449 * 98.54930 * 6 4 2 29 29 H 1.09002 * 110.37095 * 200.65489 * 8 7 6 30 30 H 1.09004 * 110.46658 * 78.36411 * 8 7 6 31 31 H 0.97006 * 119.99775 * 276.81074 * 11 9 8 32 32 H 0.97002 * 119.99898 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7449 -0.1804 -2.1485 6 6 1.5127 -2.1726 -1.2895 7 8 2.6065 -2.9479 -1.8266 8 6 3.7946 -2.4102 -1.2060 9 6 3.5757 -0.8811 -1.1931 10 1 4.0397 -0.4215 -2.0658 11 7 4.1079 -0.2968 0.0404 12 6 5.3598 0.2578 0.0507 13 1 5.9548 0.2649 -0.8506 14 6 5.8639 0.8120 1.2194 15 7 5.1386 0.8039 2.3177 16 14 7.5720 1.5680 1.2336 17 1 7.4787 3.0084 0.8848 18 1 8.1659 1.4238 2.5870 19 1 8.4294 0.8727 0.2401 20 1 -0.3634 0.5139 0.8901 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 0.8899 24 1 1.5833 1.9894 -0.8250 25 1 1.7763 1.9211 0.9432 26 1 3.1235 1.4448 -0.1182 27 1 1.2633 -2.5138 -0.2847 28 1 0.6422 -2.2422 -1.9417 29 1 4.6771 -2.6623 -1.7941 30 1 3.8972 -2.7875 -0.1885 31 1 3.5734 -0.3027 0.8499 32 1 5.4910 1.1908 3.1345 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699721759.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = -53.834286 kcal Electronic energy + Delta-G solvation = -13641.322000 eV Core-core repulsion = 11408.493601 eV Total energy + Delta-G solvation = -2232.828399 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.82678 -37.05610 -35.50175 -33.02162 -30.28429 -28.96805 -27.78084 -25.53156 -23.68009 -22.60894 -20.13900 -19.31535 -17.29679 -16.94465 -16.31464 -16.13878 -15.53916 -15.00178 -14.50345 -14.39504 -13.82106 -13.45110 -13.11720 -12.90091 -12.87247 -12.62670 -12.25068 -12.15901 -11.98576 -11.84733 -11.49537 -11.30135 -11.07151 -10.84064 -10.63706 -8.90831 -7.92400 -5.19896 1.49029 1.49299 1.57378 2.56349 3.13269 3.40443 3.76597 3.88077 4.03421 4.12937 4.36187 4.41575 4.48231 4.56241 4.61779 4.90299 4.91854 4.94342 5.01064 5.03786 5.12866 5.17338 5.31513 5.43300 5.53668 5.59874 5.90176 5.92752 6.29799 7.37207 8.09622 8.35330 9.29975 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.039832 B = 0.011771 C = 0.009793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.785496 B = 2378.168901 C = 2858.501530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.152 4.152 4 C -0.120 4.120 5 H 0.092 0.908 6 C 0.053 3.947 7 O -0.396 6.396 8 C 0.028 3.972 9 C 0.141 3.859 10 H 0.063 0.937 11 N -0.717 5.717 12 C -0.243 4.243 13 H 0.074 0.926 14 C -0.066 4.066 15 N -0.962 5.962 16 Si 0.966 3.034 17 H -0.289 1.289 18 H -0.299 1.299 19 H -0.272 1.272 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.383 0.617 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 -2.495 -6.522 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 C -0.210 4.210 4 C -0.139 4.139 5 H 0.110 0.890 6 C -0.024 4.024 7 O -0.314 6.314 8 C -0.051 4.051 9 C 0.031 3.969 10 H 0.081 0.919 11 N -0.360 5.360 12 C -0.375 4.375 13 H 0.092 0.908 14 C -0.259 4.259 15 N -0.612 5.612 16 Si 0.795 3.205 17 H -0.216 1.216 18 H -0.226 1.226 19 H -0.197 1.197 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.220 0.780 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.937 -2.617 -6.726 10.728 hybrid contribution 1.034 0.629 0.900 1.509 sum -6.903 -1.988 -5.825 9.248 Atomic orbital electron populations 1.21852 0.93522 1.02254 1.02133 1.20780 0.96116 0.95852 0.96180 1.22054 1.03912 0.95453 0.99546 1.22796 0.95010 0.96691 0.99448 0.89006 1.23575 0.90613 0.88909 0.99272 1.89007 1.16856 1.58640 1.66931 1.24192 0.88236 0.95753 0.96934 1.21739 0.93412 0.91708 0.90052 0.91861 1.42830 1.16356 1.68338 1.08448 1.19612 0.93137 1.29130 0.95629 0.90765 1.25412 1.01715 1.03024 0.95712 1.69803 1.38578 1.52097 1.00771 0.85260 0.80580 0.78274 0.76339 1.21627 1.22555 1.19701 0.92887 0.91581 0.91611 0.93704 0.93097 0.95055 0.90968 0.92622 0.86871 0.89554 0.93950 0.77998 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.94 71.98 0.64 -2.88 16 2 C -0.07 -2.34 1.84 -10.79 -0.02 -2.36 16 3 C -0.15 -5.75 8.63 71.98 0.62 -5.13 16 4 C -0.12 -3.83 2.68 -9.78 -0.03 -3.86 16 5 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 6 C 0.05 1.53 6.09 72.48 0.44 1.97 16 7 O -0.40 -13.70 11.65 -148.98 -1.74 -15.43 16 8 C 0.03 1.06 7.35 72.48 0.53 1.60 16 9 C 0.14 5.54 3.55 46.01 0.16 5.70 16 10 H 0.06 2.51 8.04 -2.39 -0.02 2.49 16 11 N -0.72 -34.36 2.79 -318.15 -0.89 -35.24 16 12 C -0.24 -12.98 9.42 84.03 0.79 -12.18 16 13 H 0.07 3.83 7.82 -2.91 -0.02 3.81 16 14 C -0.07 -3.65 5.50 84.86 0.47 -3.18 16 15 N -0.96 -56.95 13.06 21.65 0.28 -56.67 16 16 Si 0.97 45.31 29.55 68.60 2.03 47.34 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 21 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.06 1.43 7.03 -2.39 -0.02 1.42 16 23 H 0.04 1.75 6.52 -2.39 -0.02 1.74 16 24 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 3.34 5.15 -2.39 -0.01 3.32 16 27 H 0.06 1.61 7.56 -2.38 -0.02 1.59 16 28 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.04 1.72 8.06 -2.39 -0.02 1.71 16 31 H 0.38 19.61 4.94 -92.70 -0.46 19.15 16 32 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -59.23 252.80 3.93 -55.29 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.63 Total: 25.04 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.61 Total: -20.33 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -0.60 Total: -91.92 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -1.74 Total: -15.43 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -59.23 3.93 -55.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699721759.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.460 kcal (2) G-P(sol) polarization free energy of solvation -59.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds