Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.45791 * 303.85417 * 4 3 2 6 6 C 1.54484 * 110.50985 * 66.45777 * 4 3 2 7 7 O 1.44422 * 104.80451 * 142.62546 * 6 4 3 8 8 C 1.44432 * 105.27202 * 319.48749 * 7 6 4 9 9 C 1.54476 * 104.80335 * 40.51096 * 8 7 6 10 10 H 1.08998 * 110.51077 * 94.67068 * 9 8 7 11 11 N 1.46503 * 110.51004 * 217.37818 * 9 8 7 12 12 C 1.36937 * 119.99627 * 269.64350 * 11 9 8 13 13 H 1.07993 * 120.00520 * 0.02562 * 12 11 9 14 14 C 1.38824 * 119.99854 * 180.02562 * 12 11 9 15 15 N 1.31611 * 119.99707 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47184 * 59.99943 * 16 14 12 18 18 H 1.48494 * 109.46806 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46944 * 299.99966 * 16 14 12 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 23 23 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 25 25 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 26 26 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 27 27 H 1.08999 * 110.36934 * 261.45583 * 6 4 3 28 28 H 1.08996 * 110.37291 * 23.79027 * 6 4 3 29 29 H 1.08998 * 110.37091 * 159.34886 * 8 7 6 30 30 H 1.09008 * 110.37211 * 281.57157 * 8 7 6 31 31 H 0.96998 * 120.00243 * 89.64471 * 11 9 8 32 32 H 0.97001 * 120.00048 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9513 0.8735 0.8472 6 6 4.1107 0.8648 -1.3274 7 8 5.2791 1.6591 -1.6268 8 6 4.9151 3.0147 -1.2862 9 6 4.1114 2.8894 0.0271 10 1 4.7622 3.0372 0.8888 11 7 3.0061 3.8508 0.0461 12 6 3.1952 5.1011 0.5715 13 1 4.1592 5.3787 0.9714 14 6 2.1478 6.0120 0.5900 15 7 0.9731 5.6739 0.1022 16 14 2.4060 7.7178 1.3060 17 1 3.4752 8.4161 0.5482 18 1 1.1430 8.4925 1.2069 19 1 2.8051 7.6011 2.7316 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 4.3858 -0.1823 -1.2011 28 1 3.3676 0.9700 -2.1179 29 1 5.8083 3.6191 -1.1283 30 1 4.2970 3.4503 -2.0713 31 1 2.1403 3.6016 -0.3134 32 1 0.2412 6.3104 0.1148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699783050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -48.037927 kcal Electronic energy + Delta-G solvation = -13283.747222 eV Core-core repulsion = 11051.170173 eV Total energy + Delta-G solvation = -2232.577050 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.15971 -35.16965 -34.02653 -31.52805 -29.75318 -27.37750 -25.50809 -23.71899 -22.19925 -20.96632 -18.92629 -17.34863 -15.69337 -15.40778 -15.05418 -14.29490 -14.17363 -13.56410 -13.36911 -13.00748 -12.34874 -12.11779 -11.61365 -11.46824 -11.19924 -10.84507 -10.79303 -10.62089 -10.36989 -10.14192 -10.06164 -9.78566 -9.60628 -9.28174 -8.89524 -7.01393 -5.81305 -3.10562 3.41959 3.46621 3.47340 4.48289 4.63058 5.10854 5.19475 5.35426 5.41902 5.51777 5.58035 5.63901 5.86752 5.95375 6.01305 6.03687 6.12800 6.17520 6.30704 6.35871 6.40497 6.49308 6.59323 6.69988 6.85377 6.90931 7.37333 7.67741 8.37794 9.49123 10.05106 10.40444 11.41109 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031789 B = 0.011049 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.603358 B = 2533.669825 C = 3244.774022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.105 4.105 4 C -0.130 4.130 5 H 0.075 0.925 6 C 0.053 3.947 7 O -0.391 6.391 8 C 0.021 3.979 9 C 0.151 3.849 10 H 0.062 0.938 11 N -0.717 5.717 12 C -0.246 4.246 13 H 0.070 0.930 14 C -0.011 4.011 15 N -0.932 5.932 16 Si 0.908 3.092 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.286 1.286 20 H 0.054 0.946 21 H 0.046 0.954 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.390 0.610 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -9.676 -0.814 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.143 4.143 4 C -0.150 4.150 5 H 0.094 0.906 6 C -0.024 4.024 7 O -0.310 6.310 8 C -0.059 4.059 9 C 0.039 3.961 10 H 0.080 0.920 11 N -0.361 5.361 12 C -0.377 4.377 13 H 0.088 0.912 14 C -0.207 4.207 15 N -0.580 5.580 16 Si 0.739 3.261 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.335 -9.575 -0.819 9.889 hybrid contribution -0.361 1.043 0.309 1.146 sum 1.974 -8.531 -0.509 8.772 Atomic orbital electron populations 1.21761 0.96132 1.00697 1.02289 1.21577 0.95748 0.97636 1.01146 1.21503 0.93605 0.95455 1.03726 1.22757 0.96669 0.97850 0.97711 0.90644 1.23401 0.88054 0.95232 0.95747 1.89003 1.35351 1.19553 1.87046 1.24455 0.99848 0.82729 0.98870 1.21537 0.90754 0.88308 0.95473 0.91970 1.42642 1.09720 1.11189 1.72506 1.19255 0.96544 0.89579 1.32343 0.91171 1.24742 0.95751 0.98566 1.01619 1.69641 1.01700 1.35454 1.51203 0.86260 0.76715 0.84259 0.78901 1.21229 1.21676 1.21227 0.92671 0.93483 0.92585 0.92632 0.92546 0.91491 0.90305 0.90276 0.92784 0.90247 0.92191 0.77280 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.68 5.78 -26.73 -0.15 -1.83 16 3 C -0.11 -1.79 3.26 -26.73 -0.09 -1.87 16 4 C -0.13 -2.22 3.16 -89.05 -0.28 -2.50 16 5 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 6 C 0.05 0.84 6.32 37.94 0.24 1.08 16 7 O -0.39 -7.28 11.65 -35.23 -0.41 -7.70 16 8 C 0.02 0.40 7.35 37.93 0.28 0.68 16 9 C 0.15 3.09 3.76 -66.37 -0.25 2.84 16 10 H 0.06 1.29 8.09 -51.93 -0.42 0.87 16 11 N -0.72 -17.68 4.58 -51.91 -0.24 -17.92 16 12 C -0.25 -6.75 9.96 -15.05 -0.15 -6.90 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 15 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 16 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.69 7.49 -51.93 -0.39 0.30 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.25 6.99 -51.93 -0.36 0.89 16 26 H 0.08 1.54 7.72 -51.93 -0.40 1.14 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.85 7.81 -51.93 -0.41 0.45 16 29 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.06 1.25 8.06 -51.92 -0.42 0.83 16 31 H 0.39 10.00 5.18 -40.82 -0.21 9.79 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 259.63 15.07 3.91 3.91 Total: -1.00 -29.10 259.63 -6.28 -35.38 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.11 Total: 6.57 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.13 Total: -10.50 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.49 Total: -44.83 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.41 Total: -7.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.10 -6.28 -35.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699783050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.660 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds