Wall clock time and date at job start Mon Mar 30 2020 02:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 H 1.09003 * 110.45791 * 303.85417 * 4 3 2 6 6 C 1.54484 * 110.50985 * 66.45777 * 4 3 2 7 7 O 1.44422 * 104.80451 * 142.62546 * 6 4 3 8 8 C 1.44432 * 105.27202 * 319.48749 * 7 6 4 9 9 C 1.54476 * 104.80335 * 40.51096 * 8 7 6 10 10 H 1.08998 * 110.51077 * 94.67068 * 9 8 7 11 11 N 1.46503 * 110.51004 * 217.37818 * 9 8 7 12 12 C 1.36937 * 119.99627 * 269.64350 * 11 9 8 13 13 H 1.07993 * 120.00520 * 0.02562 * 12 11 9 14 14 C 1.38824 * 119.99854 * 180.02562 * 12 11 9 15 15 N 1.31611 * 119.99707 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47184 * 59.99943 * 16 14 12 18 18 H 1.48494 * 109.46806 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46944 * 299.99966 * 16 14 12 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 23 23 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 24 24 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 25 25 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 26 26 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 27 27 H 1.08999 * 110.36934 * 261.45583 * 6 4 3 28 28 H 1.08996 * 110.37291 * 23.79027 * 6 4 3 29 29 H 1.08998 * 110.37091 * 159.34886 * 8 7 6 30 30 H 1.09008 * 110.37211 * 281.57157 * 8 7 6 31 31 H 0.96998 * 120.00243 * 89.64471 * 11 9 8 32 32 H 0.97001 * 120.00048 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9513 0.8735 0.8472 6 6 4.1107 0.8648 -1.3274 7 8 5.2791 1.6591 -1.6268 8 6 4.9151 3.0147 -1.2862 9 6 4.1114 2.8894 0.0271 10 1 4.7622 3.0372 0.8888 11 7 3.0061 3.8508 0.0461 12 6 3.1952 5.1011 0.5715 13 1 4.1592 5.3787 0.9714 14 6 2.1478 6.0120 0.5900 15 7 0.9731 5.6739 0.1022 16 14 2.4060 7.7178 1.3060 17 1 3.4752 8.4161 0.5482 18 1 1.1430 8.4925 1.2069 19 1 2.8051 7.6011 2.7316 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 4.3858 -0.1823 -1.2011 28 1 3.3676 0.9700 -2.1179 29 1 5.8083 3.6191 -1.1283 30 1 4.2970 3.4503 -2.0713 31 1 2.1403 3.6016 -0.3134 32 1 0.2412 6.3104 0.1148 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699783050.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:18 Heat of formation + Delta-G solvation = -66.611839 kcal Electronic energy + Delta-G solvation = -13284.552647 eV Core-core repulsion = 11051.170173 eV Total energy + Delta-G solvation = -2233.382475 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.65300 -36.66606 -35.70254 -33.34079 -31.26212 -29.10485 -26.80239 -25.70896 -23.62461 -22.30144 -20.45613 -19.32063 -17.20341 -17.05749 -16.45609 -16.11854 -15.57504 -15.31683 -14.92928 -14.40643 -13.75488 -13.52854 -13.25908 -12.93303 -12.81078 -12.66961 -12.40035 -12.16049 -11.91489 -11.83805 -11.42502 -11.35578 -11.21490 -10.97358 -10.67422 -9.04300 -7.96149 -5.25104 1.47030 1.49374 1.55452 2.54262 3.10683 3.36428 3.73982 3.84576 4.02646 4.08987 4.29198 4.34015 4.42523 4.49381 4.55507 4.74943 4.84860 4.90363 4.99063 5.02121 5.10427 5.18087 5.20119 5.37525 5.47418 5.48868 5.56175 5.89429 6.26820 7.33142 8.06854 8.32058 9.26813 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.031789 B = 0.011049 C = 0.008627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.603358 B = 2533.669825 C = 3244.774022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.096 4.096 4 C -0.123 4.123 5 H 0.095 0.905 6 C 0.054 3.946 7 O -0.395 6.395 8 C 0.030 3.970 9 C 0.139 3.861 10 H 0.059 0.941 11 N -0.727 5.727 12 C -0.249 4.249 13 H 0.075 0.925 14 C -0.071 4.071 15 N -0.967 5.967 16 Si 0.972 3.028 17 H -0.279 1.279 18 H -0.296 1.296 19 H -0.278 1.278 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.116 0.884 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.382 0.618 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.008 -10.961 -0.603 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.134 4.134 4 C -0.142 4.142 5 H 0.113 0.887 6 C -0.023 4.023 7 O -0.314 6.314 8 C -0.050 4.050 9 C 0.029 3.971 10 H 0.077 0.923 11 N -0.370 5.370 12 C -0.380 4.380 13 H 0.093 0.907 14 C -0.263 4.263 15 N -0.617 5.617 16 Si 0.801 3.199 17 H -0.205 1.205 18 H -0.222 1.222 19 H -0.204 1.204 20 H 0.064 0.936 21 H 0.091 0.909 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.134 0.866 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.218 0.782 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.280 -10.889 -0.605 11.388 hybrid contribution -0.602 1.371 0.235 1.516 sum 2.679 -9.517 -0.370 9.894 Atomic orbital electron populations 1.21770 0.95936 1.02011 1.01257 1.21535 0.95919 0.95105 1.02770 1.21356 0.93677 0.97431 1.00943 1.22739 0.96490 0.95650 0.99362 0.88676 1.23585 0.87328 0.96559 0.94808 1.89003 1.36399 1.18914 1.87063 1.24181 0.99574 0.83659 0.97546 1.21769 0.89907 0.89681 0.95741 0.92254 1.42775 1.10557 1.11283 1.72398 1.19644 0.96557 0.90639 1.31195 0.90679 1.25526 0.95686 1.02244 1.02883 1.69798 1.02404 1.36418 1.53080 0.85241 0.76340 0.79925 0.78425 1.20506 1.22205 1.20412 0.93574 0.90945 0.93859 0.90714 0.91020 0.93869 0.93557 0.86643 0.92666 0.89579 0.94010 0.78185 0.93963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.12 -2.88 5.78 30.60 0.18 -2.71 16 3 C -0.10 -3.22 3.26 30.60 0.10 -3.12 16 4 C -0.12 -3.98 3.16 -9.78 -0.03 -4.01 16 5 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 6 C 0.05 1.56 6.32 72.49 0.46 2.02 16 7 O -0.40 -13.85 11.65 -148.98 -1.74 -15.59 16 8 C 0.03 1.15 7.35 72.48 0.53 1.68 16 9 C 0.14 5.62 3.76 46.00 0.17 5.80 16 10 H 0.06 2.42 8.09 -2.39 -0.02 2.40 16 11 N -0.73 -36.38 4.58 -318.14 -1.46 -37.84 16 12 C -0.25 -13.72 9.96 84.04 0.84 -12.88 16 13 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 14 C -0.07 -4.03 5.50 84.87 0.47 -3.57 16 15 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 16 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 20 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 21 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 1.60 7.49 -2.39 -0.02 1.58 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.64 6.99 -2.39 -0.02 1.62 16 26 H 0.05 1.84 7.72 -2.39 -0.02 1.82 16 27 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.06 1.62 7.81 -2.39 -0.02 1.60 16 29 H 0.09 3.14 8.14 -2.39 -0.02 3.13 16 30 H 0.04 1.75 8.06 -2.38 -0.02 1.73 16 31 H 0.38 20.19 5.18 -92.71 -0.48 19.71 16 32 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -61.97 259.63 3.14 -58.82 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.60 Total: 24.79 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: 3.43 Total: -19.84 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -1.17 Total: -96.14 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.74 Total: -15.59 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -61.97 3.14 -58.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699783050.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.790 kcal (2) G-P(sol) polarization free energy of solvation -61.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds