Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47094 * 300.00394 * 3 2 1 6 6 H 1.48498 * 109.47013 * 60.00372 * 3 2 1 7 7 C 1.37874 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00196 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99732 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46775 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46852 * 179.97438 * 10 9 7 12 12 O 1.42901 * 109.46903 * 179.97438 * 11 10 9 13 13 C 1.42901 * 114.00028 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47353 * 180.02562 * 13 12 11 15 15 N 1.46902 * 115.56038 * 34.30977 * 14 13 12 16 16 C 1.53000 * 117.49776 * 179.97438 * 14 13 12 17 17 C 1.52997 * 117.49537 * 248.62452 * 14 13 12 18 18 H 0.96995 * 120.00367 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47150 * 60.00625 * 9 7 2 20 20 H 1.08998 * 109.47371 * 299.99881 * 9 7 2 21 21 H 1.08997 * 109.47539 * 59.99944 * 10 9 7 22 22 H 1.09001 * 109.47374 * 299.99626 * 10 9 7 23 23 H 1.08999 * 109.47074 * 60.00655 * 11 10 9 24 24 H 1.08998 * 109.47371 * 299.99959 * 11 10 9 25 25 H 1.08994 * 109.47342 * 60.00351 * 13 12 11 26 26 H 1.09000 * 109.47034 * 300.00375 * 13 12 11 27 27 H 1.00903 * 111.00011 * 325.68881 * 15 14 13 28 28 H 1.00896 * 110.99951 * 89.64017 * 15 14 13 29 29 H 1.08990 * 117.49990 * 359.97438 * 16 14 13 30 30 H 1.09004 * 117.49237 * 214.97568 * 16 14 13 31 31 H 1.08999 * 117.49685 * 145.02116 * 17 14 13 32 32 H 1.08999 * 117.52022 * 359.97438 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 8 2.4089 -6.0732 -0.0030 13 6 1.7944 -7.3633 -0.0031 14 6 2.8774 -8.4441 -0.0045 15 7 4.0999 -8.1174 0.7418 16 6 2.4188 -9.9038 -0.0042 17 6 3.0270 -9.2926 -1.2688 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8897 21 1 2.8727 -3.6047 0.8876 22 1 2.8713 -3.6039 -0.8923 23 1 0.8528 -5.0447 -0.8905 24 1 0.8546 -5.0450 0.8895 25 1 1.1733 -7.4698 -0.8924 26 1 1.1753 -7.4709 0.8875 27 1 4.3111 -7.1329 0.6766 28 1 4.0240 -8.4079 1.7050 29 1 1.3456 -10.0941 -0.0027 30 1 3.0244 -10.6214 0.5493 31 1 4.0325 -9.6085 -1.5468 32 1 2.3538 -9.0814 -2.0996 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706408366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -63.849379 kcal Electronic energy + Delta-G solvation = -12326.765228 eV Core-core repulsion = 10093.502542 eV Total energy + Delta-G solvation = -2233.262686 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80747 -37.99597 -35.81389 -33.51815 -31.91508 -29.12790 -27.33338 -24.76326 -23.34210 -22.14764 -20.56306 -18.60738 -17.62960 -17.21511 -16.92571 -16.48510 -15.89488 -15.48840 -14.95437 -14.64701 -14.21564 -13.61572 -13.40851 -13.05878 -12.79401 -12.45385 -12.34854 -12.08585 -11.82968 -11.62412 -11.47531 -11.24446 -11.03311 -10.58289 -10.54484 -9.62690 -8.22831 -6.33919 1.40342 1.40555 1.54389 2.36616 2.47946 2.92401 3.10880 3.40571 3.85196 3.99658 4.12903 4.19622 4.25993 4.43860 4.55674 4.63488 4.76040 4.79290 4.89330 4.91949 5.02634 5.14777 5.27970 5.47522 5.67247 5.80696 6.07698 6.21705 6.33527 6.53159 6.82018 7.35645 8.89502 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.089681 B = 0.005101 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.144063 B = 5488.045496 C = 5653.607080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.096 4.096 11 C 0.076 3.924 12 O -0.401 6.401 13 C 0.068 3.932 14 C 0.022 3.978 15 N -0.812 5.812 16 C -0.148 4.148 17 C -0.165 4.165 18 H 0.265 0.735 19 H -0.004 1.004 20 H -0.003 1.003 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.352 0.648 28 H 0.346 0.654 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -16.651 0.525 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.010 4.010 10 C -0.133 4.133 11 C 0.000 4.000 12 O -0.321 6.321 13 C -0.011 4.011 14 C -0.072 4.072 15 N -0.342 5.342 16 C -0.185 4.185 17 C -0.203 4.203 18 H 0.074 0.926 19 H 0.015 0.985 20 H 0.016 0.984 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.166 0.834 28 H 0.160 0.840 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.115 0.885 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.963 -17.008 0.029 17.464 hybrid contribution -0.803 1.628 0.548 1.896 sum 3.160 -15.380 0.576 15.712 Atomic orbital electron populations 1.70090 1.07769 1.27857 1.51583 1.25973 0.95799 1.03375 0.94548 0.85366 0.79015 0.78584 0.77895 1.18701 1.20234 1.20189 1.21684 0.93593 0.92257 1.50770 0.92235 1.18935 0.94253 0.92558 0.95301 1.21387 0.98588 0.92029 1.01324 1.22476 0.91590 0.85907 1.00011 1.87726 1.34643 1.14182 1.95524 1.22606 0.94895 0.82540 1.01027 1.21349 0.91491 0.91707 1.02667 1.58599 1.32831 1.25187 1.17628 1.23233 1.02118 0.92402 1.00763 1.23283 1.02738 1.02601 0.91684 0.92641 0.98520 0.98445 0.92614 0.92791 0.93370 0.93289 0.92192 0.92499 0.83391 0.83998 0.87028 0.87239 0.88520 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.10 -4.11 5.52 30.60 0.17 -3.94 16 11 C 0.08 2.72 5.94 71.98 0.43 3.14 16 12 O -0.40 -12.96 9.06 -148.98 -1.35 -14.32 16 13 C 0.07 1.70 6.16 71.98 0.44 2.15 16 14 C 0.02 0.49 3.08 3.53 0.01 0.50 16 15 N -0.81 -18.95 9.75 -151.56 -1.48 -20.43 16 16 C -0.15 -2.44 10.18 30.61 0.31 -2.13 16 17 C -0.17 -3.27 10.11 30.61 0.31 -2.96 16 18 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 19 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 20 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 21 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 22 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.06 1.41 7.90 -2.39 -0.02 1.39 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.35 9.34 7.73 -89.69 -0.69 8.64 16 28 H 0.35 6.80 9.08 -89.70 -0.81 5.99 16 29 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.10 1.83 8.05 -2.39 -0.02 1.81 16 Total: -1.00 -63.64 273.71 1.59 -62.05 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -0.41 Total: 15.12 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 2.52 Total: -32.44 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -1.19 Total: -76.93 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.35 Total: -14.32 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.64 1.59 -62.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706408366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.799 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds