Wall clock time and date at job start Mon Mar 30 2020 01:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00146 * 2 1 4 4 H 1.48495 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47078 * 300.00030 * 3 2 1 6 6 H 1.48502 * 109.46876 * 59.99756 * 3 2 1 7 7 C 1.37876 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00336 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99938 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99793 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 O 1.42895 * 109.47503 * 180.02562 * 13 12 11 15 15 C 1.42902 * 114.00370 * 179.97438 * 14 13 12 16 16 C 1.52998 * 117.49859 * 218.61728 * 15 14 13 17 17 C 1.52996 * 60.00224 * 252.51152 * 16 15 14 18 18 H 0.97003 * 120.00204 * 0.02562 * 1 2 3 19 19 H 1.09006 * 109.47061 * 60.00581 * 9 7 2 20 20 H 1.08995 * 109.47155 * 299.99819 * 9 7 2 21 21 H 1.00898 * 110.99995 * 56.04971 * 10 9 7 22 22 H 1.09001 * 109.46874 * 60.00179 * 11 10 9 23 23 H 1.08992 * 109.47407 * 300.00197 * 11 10 9 24 24 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 25 25 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 26 26 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 27 27 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 28 28 H 1.08998 * 115.54790 * 4.33182 * 15 14 13 29 29 H 1.08993 * 117.49864 * 0.02562 * 16 15 14 30 30 H 1.09005 * 117.49522 * 145.02185 * 16 15 14 31 31 H 1.08999 * 117.50037 * 252.51220 * 17 16 15 32 32 H 1.08999 * 117.51713 * 107.48427 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2056 -3.6158 0.0015 11 6 1.5053 -4.9071 0.0020 12 6 2.5302 -6.0430 0.0011 13 6 1.8009 -7.3880 0.0009 14 8 2.7580 -8.4490 0.0007 15 6 2.1781 -9.7550 0.0011 16 6 2.8610 -10.8309 0.8480 17 6 2.9654 -10.8778 -0.6777 18 1 -0.4850 0.8400 -0.0004 19 1 0.6240 -2.5575 -0.8881 20 1 0.6247 -2.5563 0.8919 21 1 2.8410 -3.5484 0.7823 22 1 0.8800 -4.9816 -0.8878 23 1 0.8807 -4.9814 0.8921 24 1 3.1544 -5.9685 -0.8894 25 1 3.1558 -5.9687 0.8906 26 1 1.1764 -7.4627 0.8912 27 1 1.1755 -7.4622 -0.8887 28 1 1.0911 -9.7868 -0.0727 29 1 3.7522 -10.5423 1.4051 30 1 2.2231 -11.5706 1.3318 31 1 2.3962 -11.6483 -1.1976 32 1 3.9254 -10.6201 -1.1249 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717284756.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:23 Heat of formation + Delta-G solvation = -51.994460 kcal Electronic energy + Delta-G solvation = -12019.625841 eV Core-core repulsion = 9786.877224 eV Total energy + Delta-G solvation = -2232.748618 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.55768 -37.63861 -36.05258 -34.73337 -32.39279 -28.67117 -25.56541 -23.37412 -23.28257 -22.94689 -22.21417 -18.60216 -18.05298 -17.13100 -16.69682 -16.19487 -16.02234 -15.29044 -14.84563 -14.65369 -14.10803 -13.64259 -13.51304 -12.95366 -12.70879 -12.52338 -12.40345 -12.36861 -12.11813 -11.92813 -11.66245 -11.38870 -11.24831 -10.67819 -10.06408 -9.16191 -8.23909 -6.35322 1.41567 1.42433 1.56673 2.38076 2.46712 2.92525 3.09459 3.60722 3.89709 3.96267 4.07930 4.17467 4.21665 4.40390 4.48919 4.56307 4.70717 4.72363 4.76061 5.01258 5.03891 5.15921 5.22231 5.24053 5.27756 5.60849 6.00113 6.28416 6.42015 6.70089 6.86969 7.35810 8.88081 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.127285 B = 0.004308 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 219.926586 B = 6498.274147 C = 6616.910754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.206 3.794 10 N -0.693 5.693 11 C 0.064 3.936 12 C -0.103 4.103 13 C 0.072 3.928 14 O -0.381 6.381 15 C -0.006 4.006 16 C -0.187 4.187 17 C -0.182 4.182 18 H 0.266 0.734 19 H 0.002 0.998 20 H -0.036 1.036 21 H 0.336 0.664 22 H 0.062 0.938 23 H 0.024 0.976 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -18.515 0.987 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.323 5.323 11 C -0.065 4.065 12 C -0.141 4.141 13 C -0.005 4.005 14 O -0.300 6.300 15 C -0.064 4.064 16 C -0.224 4.224 17 C -0.219 4.219 18 H 0.075 0.925 19 H 0.020 0.980 20 H -0.019 1.019 21 H 0.153 0.847 22 H 0.081 0.919 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.109 0.891 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.424 -18.360 0.298 18.679 hybrid contribution -0.471 0.908 0.869 1.342 sum 2.953 -17.452 1.167 17.739 Atomic orbital electron populations 1.70094 1.07820 1.28038 1.51488 1.25987 0.95847 1.03505 0.94490 0.85236 0.78883 0.78060 0.77813 1.18667 1.20308 1.20167 1.21591 0.93878 0.91445 1.50701 0.91714 1.19245 0.90682 0.88886 0.93399 1.60509 1.20645 1.01656 1.49520 1.21791 0.95697 0.89097 0.99953 1.21324 0.98147 0.91381 1.03235 1.22464 0.91080 0.85743 1.01209 1.87778 1.33927 1.13820 1.94458 1.22984 0.96661 0.80312 1.06397 1.23459 1.03704 1.01136 0.94113 1.23418 1.02722 1.00178 0.95582 0.92534 0.98031 1.01870 0.84668 0.91904 0.95810 0.91271 0.91410 0.92176 0.92089 0.85654 0.89114 0.86230 0.86111 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.98 44.67 29.54 68.60 2.03 46.70 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -31.32 9.32 25.60 0.24 -31.08 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.30 5.44 85.56 0.47 11.76 16 10 N -0.69 -30.80 6.49 -517.92 -3.36 -34.16 16 11 C 0.06 2.29 5.69 86.30 0.49 2.79 16 12 C -0.10 -3.02 5.84 30.59 0.18 -2.84 16 13 C 0.07 1.77 5.81 71.98 0.42 2.19 16 14 O -0.38 -9.98 10.60 -148.98 -1.58 -11.56 16 15 C -0.01 -0.12 6.44 30.59 0.20 0.08 16 16 C -0.19 -3.04 10.48 30.59 0.32 -2.72 16 17 C -0.18 -2.96 10.48 30.59 0.32 -2.64 16 18 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 19 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 20 H -0.04 -2.12 8.14 -2.39 -0.02 -2.14 16 21 H 0.34 14.12 8.72 -89.70 -0.78 13.34 16 22 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.13 1.96 7.93 -2.39 -0.02 1.95 16 29 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.42 276.66 0.76 -64.67 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.29 Total: 13.03 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 3.09 Total: -22.02 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -3.08 Total: -90.82 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -1.58 Total: -11.56 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -65.42 0.76 -64.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717284756.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.671 kcal (2) G-P(sol) polarization free energy of solvation -65.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds