Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 N 1.46891 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00293 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47253 * 179.97438 * 12 11 10 14 14 H 1.08993 * 112.85316 * 43.80534 * 13 12 11 15 15 C 1.53781 * 113.61341 * 175.00368 * 13 12 11 16 16 C 1.53783 * 87.08283 * 139.97742 * 15 13 12 17 17 H 1.09010 * 113.60998 * 89.20109 * 16 15 13 18 18 O 1.42892 * 113.61802 * 220.01489 * 16 15 13 19 19 C 1.53775 * 87.08109 * 334.56982 * 16 15 13 20 20 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 22 22 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 23 23 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 24 24 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 25 25 H 1.00906 * 111.00022 * 56.04751 * 11 10 9 26 26 H 1.08994 * 109.47339 * 300.00287 * 12 11 10 27 27 H 1.09007 * 109.46735 * 59.99893 * 12 11 10 28 28 H 1.09002 * 113.61535 * 254.52888 * 15 13 12 29 29 H 1.08999 * 113.61751 * 25.35072 * 15 13 12 30 30 H 0.96703 * 114.00647 * 180.02562 * 18 16 15 31 31 H 1.09004 * 113.61278 * 270.88340 * 19 16 15 32 32 H 1.08999 * 113.61915 * 139.97962 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0009 12 6 6.0171 -4.0078 -0.0002 13 6 7.5465 -3.9669 -0.0008 14 1 7.9506 -3.2306 0.6938 15 6 8.1999 -5.3536 0.1226 16 6 9.2333 -4.8717 -0.9093 17 1 10.1002 -4.3836 -0.4639 18 8 9.5900 -5.8674 -1.8701 19 6 8.1602 -3.8900 -1.4088 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6800 -0.8911 22 1 3.8753 -0.6803 0.8889 23 1 3.6586 -3.1501 0.8892 24 1 3.6580 -3.1504 -0.8907 25 1 5.8522 -2.1102 0.7805 26 1 5.6676 -4.5307 0.8899 27 1 5.6676 -4.5316 -0.8900 28 1 8.6247 -5.5501 1.1070 29 1 7.5692 -6.1669 -0.2363 30 1 10.2400 -5.5704 -2.5217 31 1 7.5191 -4.3031 -2.1876 32 1 8.5529 -2.9049 -1.6607 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720912216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = -43.420561 kcal Electronic energy + Delta-G solvation = -12365.450957 eV Core-core repulsion = 10133.074131 eV Total energy + Delta-G solvation = -2232.376826 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.48256 -36.20624 -34.78171 -32.73168 -30.19317 -26.72483 -25.77374 -23.61222 -21.75965 -20.48144 -19.44734 -17.59607 -16.74664 -15.64182 -15.37004 -14.60786 -14.22469 -13.90733 -13.61990 -13.08243 -12.52823 -12.48909 -12.15993 -11.56655 -11.40323 -11.35550 -11.00019 -10.75972 -10.40573 -10.02728 -9.97095 -9.81282 -9.58780 -9.21344 -8.52373 -7.89782 -6.03143 -4.01441 3.32892 3.40327 3.46554 4.02587 4.40424 4.47523 4.56467 4.64507 4.77444 5.05434 5.29298 5.31666 5.52969 5.63996 5.70012 5.76015 5.85763 6.01186 6.14347 6.22509 6.30820 6.41512 6.79120 7.15138 7.39345 7.47841 7.63656 7.77927 7.93041 8.54779 9.01040 9.59294 11.10279 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.077610 B = 0.005449 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.691881 B = 5137.331138 C = 5301.254593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.288 1.288 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.694 5.694 12 C 0.070 3.930 13 C -0.105 4.105 14 H 0.091 0.909 15 C -0.125 4.125 16 C 0.070 3.930 17 H 0.078 0.922 18 O -0.563 6.563 19 C -0.152 4.152 20 H 0.263 0.737 21 H 0.025 0.975 22 H 0.008 0.992 23 H 0.021 0.979 24 H 0.064 0.936 25 H 0.333 0.667 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.375 0.625 31 H 0.089 0.911 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.471 -7.507 -0.597 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.188 1.188 6 H -0.214 1.214 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.056 4.056 11 N -0.324 5.324 12 C -0.059 4.059 13 C -0.124 4.124 14 H 0.109 0.891 15 C -0.163 4.163 16 C 0.012 3.988 17 H 0.096 0.904 18 O -0.368 6.368 19 C -0.190 4.190 20 H 0.073 0.927 21 H 0.043 0.957 22 H 0.027 0.973 23 H 0.039 0.961 24 H 0.082 0.918 25 H 0.150 0.850 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.222 0.778 31 H 0.108 0.892 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.917 -7.679 -0.940 19.516 hybrid contribution 0.485 1.019 0.665 1.310 sum 18.402 -6.660 -0.275 19.572 Atomic orbital electron populations 1.69920 1.06334 1.26910 1.51189 1.25012 0.94731 0.99219 0.94478 0.86740 0.80489 0.83413 0.78441 1.20399 1.18778 1.21421 1.21086 0.89432 0.94523 1.50959 0.91133 1.19548 0.96639 0.91896 0.96677 1.21957 0.84142 0.99997 0.99456 1.60597 1.09825 1.12486 1.49512 1.21883 0.92609 0.91133 1.00311 1.22308 0.95522 0.96718 0.97821 0.89119 1.23109 0.97130 0.97947 0.98103 1.23439 0.95295 0.89574 0.90523 0.90389 1.86523 1.64971 1.40693 1.44639 1.23622 0.98199 0.99594 0.97583 0.92736 0.95673 0.97334 0.96081 0.91779 0.84968 0.95579 0.91130 0.91127 0.89190 0.77775 0.89235 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.50 5.62 -3.83 -0.02 1.48 16 11 N -0.69 -11.86 6.50 -113.78 -0.74 -12.60 16 12 C 0.07 0.99 5.52 -3.83 -0.02 0.97 16 13 C -0.10 -1.21 3.90 -89.81 -0.35 -1.56 16 14 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 15 C -0.12 -1.30 7.47 -25.92 -0.19 -1.50 16 16 C 0.07 0.69 5.21 -25.92 -0.14 0.56 16 17 H 0.08 0.64 8.14 -51.92 -0.42 0.21 16 18 O -0.56 -5.78 13.67 -35.23 -0.48 -6.26 16 19 C -0.15 -1.70 7.46 -25.92 -0.19 -1.89 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 21 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 22 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.33 5.32 8.72 -39.29 -0.34 4.98 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 1.04 7.84 -51.92 -0.41 0.63 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.38 2.19 9.12 45.56 0.42 2.61 16 31 H 0.09 1.10 7.89 -51.93 -0.41 0.69 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 266.71 15.07 4.02 4.02 Total: -1.00 -32.10 266.71 -7.04 -39.14 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.48 Total: 1.73 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.47 Total: -15.93 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.03 Total: -40.11 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.48 Total: -6.26 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.10 -7.04 -39.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720912216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.284 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds