Wall clock time and date at job start Mon Mar 30 2020 02:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 N 1.46891 * 109.47311 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00293 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47253 * 179.97438 * 12 11 10 14 14 H 1.08993 * 112.85316 * 43.80534 * 13 12 11 15 15 C 1.53781 * 113.61341 * 175.00368 * 13 12 11 16 16 C 1.53783 * 87.08283 * 139.97742 * 15 13 12 17 17 H 1.09010 * 113.60998 * 89.20109 * 16 15 13 18 18 O 1.42892 * 113.61802 * 220.01489 * 16 15 13 19 19 C 1.53775 * 87.08109 * 334.56982 * 16 15 13 20 20 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 22 22 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 23 23 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 24 24 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 25 25 H 1.00906 * 111.00022 * 56.04751 * 11 10 9 26 26 H 1.08994 * 109.47339 * 300.00287 * 12 11 10 27 27 H 1.09007 * 109.46735 * 59.99893 * 12 11 10 28 28 H 1.09002 * 113.61535 * 254.52888 * 15 13 12 29 29 H 1.08999 * 113.61751 * 25.35072 * 15 13 12 30 30 H 0.96703 * 114.00647 * 180.02562 * 18 16 15 31 31 H 1.09004 * 113.61278 * 270.88340 * 19 16 15 32 32 H 1.08999 * 113.61915 * 139.97962 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 7 5.4906 -2.6364 -0.0009 12 6 6.0171 -4.0078 -0.0002 13 6 7.5465 -3.9669 -0.0008 14 1 7.9506 -3.2306 0.6938 15 6 8.1999 -5.3536 0.1226 16 6 9.2333 -4.8717 -0.9093 17 1 10.1002 -4.3836 -0.4639 18 8 9.5900 -5.8674 -1.8701 19 6 8.1602 -3.8900 -1.4088 20 1 -0.4849 0.8401 -0.0004 21 1 3.8746 -0.6800 -0.8911 22 1 3.8753 -0.6803 0.8889 23 1 3.6586 -3.1501 0.8892 24 1 3.6580 -3.1504 -0.8907 25 1 5.8522 -2.1102 0.7805 26 1 5.6676 -4.5307 0.8899 27 1 5.6676 -4.5316 -0.8900 28 1 8.6247 -5.5501 1.1070 29 1 7.5692 -6.1669 -0.2363 30 1 10.2400 -5.5704 -2.5217 31 1 7.5191 -4.3031 -2.1876 32 1 8.5529 -2.9049 -1.6607 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720912216.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:07 Heat of formation + Delta-G solvation = -68.622644 kcal Electronic energy + Delta-G solvation = -12366.543801 eV Core-core repulsion = 10133.074131 eV Total energy + Delta-G solvation = -2233.469670 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.33912 -37.50974 -35.91078 -34.74788 -32.01698 -28.17404 -26.61067 -25.31393 -22.83204 -22.28040 -20.37827 -18.95982 -18.37986 -16.87147 -16.47016 -16.23895 -15.56990 -15.19796 -14.87070 -14.77732 -14.39808 -13.56277 -13.34959 -13.03085 -12.91746 -12.57029 -12.33381 -11.95320 -11.82200 -11.74854 -11.48846 -11.41560 -11.13062 -10.77478 -10.60798 -9.30793 -8.30701 -6.35862 1.36727 1.39643 1.52866 2.36894 3.04851 3.14572 3.46012 3.69852 3.76010 4.01863 4.03476 4.31200 4.45073 4.54295 4.58981 4.72237 4.85472 4.88211 4.91372 4.94396 5.10085 5.25790 5.30584 5.47248 5.53400 5.63154 6.12437 6.24565 6.55273 6.73128 6.94702 7.29281 8.86177 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.077610 B = 0.005449 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.691881 B = 5137.331138 C = 5301.254593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.005 3.995 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.247 1.247 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.029 0.971 9 C -0.003 4.003 10 C 0.085 3.915 11 N -0.692 5.692 12 C 0.070 3.930 13 C -0.101 4.101 14 H 0.105 0.895 15 C -0.126 4.126 16 C 0.079 3.921 17 H 0.103 0.897 18 O -0.582 6.582 19 C -0.156 4.156 20 H 0.267 0.733 21 H 0.023 0.977 22 H 0.021 0.979 23 H 0.016 0.984 24 H 0.051 0.949 25 H 0.344 0.656 26 H 0.029 0.971 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.394 0.606 31 H 0.071 0.929 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.141 -6.646 -0.204 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.171 1.171 6 H -0.209 1.209 7 C -0.576 4.576 8 H 0.048 0.952 9 C -0.041 4.041 10 C -0.044 4.044 11 N -0.323 5.323 12 C -0.059 4.059 13 C -0.120 4.120 14 H 0.123 0.877 15 C -0.164 4.164 16 C 0.021 3.979 17 H 0.121 0.879 18 O -0.390 6.390 19 C -0.194 4.194 20 H 0.076 0.924 21 H 0.041 0.959 22 H 0.039 0.961 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.162 0.838 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.244 0.756 31 H 0.090 0.910 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.619 -6.837 -0.552 21.730 hybrid contribution -0.393 0.649 0.518 0.919 sum 20.225 -6.187 -0.034 21.151 Atomic orbital electron populations 1.70072 1.08384 1.28306 1.52465 1.26037 0.95645 1.03687 0.93845 0.85561 0.79392 0.77783 0.79296 1.18892 1.17097 1.20926 1.21429 0.92042 0.93209 1.50901 0.95213 1.19432 0.93470 0.94368 0.96859 1.21632 0.86653 0.97428 0.98700 1.60497 1.07189 1.14489 1.50136 1.21936 0.94667 0.89309 0.99956 1.22286 0.93218 0.97994 0.98503 0.87725 1.23100 0.97207 0.96755 0.99319 1.23427 0.95617 0.88862 0.90015 0.87915 1.86476 1.65871 1.41267 1.45401 1.23611 0.98655 1.00257 0.96851 0.92386 0.95884 0.96105 0.96603 0.93024 0.83837 0.95260 0.92198 0.89500 0.90478 0.75622 0.91040 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.35 16 2 C 0.00 0.28 5.47 84.65 0.46 0.74 16 3 Si 0.96 44.91 27.47 68.60 1.88 46.79 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.54 -31.87 9.66 25.60 0.25 -31.62 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 9 C 0.00 -0.17 4.30 29.85 0.13 -0.04 16 10 C 0.08 3.50 5.62 86.31 0.49 3.98 16 11 N -0.69 -22.56 6.50 -513.90 -3.34 -25.90 16 12 C 0.07 1.91 5.52 86.30 0.48 2.38 16 13 C -0.10 -2.10 3.90 -10.27 -0.04 -2.14 16 14 H 0.10 1.92 8.13 -2.39 -0.02 1.90 16 15 C -0.13 -2.35 7.47 31.12 0.23 -2.11 16 16 C 0.08 1.35 5.21 31.12 0.16 1.51 16 17 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 18 O -0.58 -10.69 13.67 -148.98 -2.04 -12.72 16 19 C -0.16 -3.17 7.46 31.12 0.23 -2.94 16 20 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 21 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 22 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 23 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.34 10.11 8.72 -89.69 -0.78 9.33 16 26 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 1.74 7.84 -2.38 -0.02 1.73 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.64 8.10 -2.39 -0.02 1.62 16 30 H 0.39 3.68 9.12 -74.06 -0.68 3.01 16 31 H 0.07 1.71 7.89 -2.39 -0.02 1.69 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -69.00 266.71 -1.22 -70.22 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -0.42 Total: 12.20 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 2.39 Total: -30.24 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -3.04 Total: -86.25 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -2.04 Total: -12.72 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -69.00 -1.22 -70.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720912216.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.595 kcal (2) G-P(sol) polarization free energy of solvation -68.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds