Wall clock time and date at job start Mon Mar 30 2020 02:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 110.01006 * 2 1 4 4 O 1.42902 * 109.47367 * 300.79930 * 3 2 1 5 5 C 1.54318 * 109.88578 * 238.89062 * 2 1 3 6 6 C 1.55141 * 103.02034 * 262.87686 * 5 2 1 7 7 C 1.54905 * 101.64793 * 324.34664 * 6 5 2 8 8 N 1.47441 * 109.89032 * 121.12012 * 2 1 3 9 9 C 1.46893 * 110.99713 * 242.66144 * 8 2 1 10 10 C 1.50704 * 109.47094 * 173.62622 * 9 8 2 11 11 H 1.08006 * 119.99447 * 354.87346 * 10 9 8 12 12 C 1.37872 * 120.00242 * 175.15215 * 10 9 8 13 13 N 1.31515 * 119.99922 * 359.72251 * 12 10 9 14 14 Si 1.86803 * 120.00236 * 179.72406 * 12 10 9 15 15 H 1.48506 * 109.47035 * 59.99816 * 14 12 10 16 16 H 1.48494 * 109.47390 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46915 * 299.99948 * 14 12 10 18 18 H 1.09001 * 109.46365 * 298.87995 * 1 2 3 19 19 H 1.08995 * 109.47382 * 58.87871 * 1 2 3 20 20 H 1.09001 * 109.46910 * 178.88147 * 1 2 3 21 21 H 1.09003 * 109.46870 * 60.79612 * 3 2 1 22 22 H 1.08999 * 109.47249 * 180.79559 * 3 2 1 23 23 H 0.96697 * 113.99678 * 179.97438 * 4 3 2 24 24 H 1.09002 * 110.70382 * 144.49049 * 5 2 1 25 25 H 1.09003 * 110.85715 * 21.33119 * 5 2 1 26 26 H 1.08993 * 110.99109 * 206.25473 * 6 5 2 27 27 H 1.09001 * 111.02471 * 82.45037 * 6 5 2 28 28 H 1.08997 * 110.37810 * 278.23404 * 7 6 5 29 29 H 1.09000 * 110.37163 * 155.90047 * 7 6 5 30 30 H 1.09002 * 109.47358 * 53.62634 * 9 8 2 31 31 H 1.09003 * 109.47603 * 293.62269 * 9 8 2 32 32 H 0.97008 * 119.99860 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 8 1.5684 2.1213 -1.1573 5 6 2.0550 -0.7498 -1.2425 6 6 2.3501 -2.1708 -0.6944 7 6 2.8586 -1.8555 0.7345 8 7 2.0317 -0.7166 1.1869 9 6 2.8030 0.1813 2.0568 10 6 3.1650 -0.5407 3.3292 11 1 2.7841 -1.5344 3.5133 12 6 3.9778 0.0696 4.2608 13 7 4.4416 1.2797 4.0366 14 14 4.4203 -0.8222 5.8414 15 1 5.1328 -2.0837 5.5152 16 1 5.2995 0.0428 6.6684 17 1 3.1806 -1.1349 6.5969 18 1 -0.3632 0.4964 0.8999 19 1 -0.3634 0.5311 -0.8797 20 1 -0.3633 -1.0275 -0.0201 21 1 1.7068 1.9506 0.8971 22 1 3.1435 1.4275 -0.0143 23 1 1.8613 3.0406 -1.2226 24 1 2.9666 -0.2841 -1.6170 25 1 1.2947 -0.7879 -2.0227 26 1 3.1229 -2.6640 -1.2839 27 1 1.4426 -2.7736 -0.6617 28 1 3.9113 -1.5738 0.7092 29 1 2.7107 -2.7151 1.3882 30 1 2.2034 1.0597 2.2955 31 1 3.7133 0.4913 1.5435 32 1 5.0138 1.7089 4.6919 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723038464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:28 Heat of formation + Delta-G solvation = -48.404714 kcal Electronic energy + Delta-G solvation = -13550.660840 eV Core-core repulsion = 11318.067886 eV Total energy + Delta-G solvation = -2232.592955 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.19942 -35.82376 -33.16107 -31.01900 -30.85576 -26.48438 -25.98822 -24.14946 -22.29152 -20.47521 -17.94869 -17.13654 -16.07500 -15.24401 -14.86437 -14.41673 -14.05071 -13.34155 -13.04267 -12.61694 -12.19693 -11.82602 -11.64660 -11.53760 -11.28780 -10.93270 -10.63825 -10.45778 -10.30378 -10.17418 -9.99994 -9.72408 -9.44546 -9.12604 -8.43181 -7.22945 -6.04680 -4.05709 3.32724 3.36465 3.39849 4.40498 4.56038 5.00669 5.17284 5.30659 5.35371 5.53395 5.75462 5.80213 5.94411 6.11230 6.17856 6.20296 6.33146 6.44470 6.50887 6.58157 6.70093 6.76624 6.90146 7.20261 7.33487 7.80416 7.96050 8.03711 8.19320 8.56252 9.02444 9.58845 11.06120 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.043409 B = 0.010663 C = 0.009418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.867624 B = 2625.260864 C = 2972.419093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.099 3.901 3 C 0.066 3.934 4 O -0.577 6.577 5 C -0.121 4.121 6 C -0.135 4.135 7 C 0.059 3.941 8 N -0.515 5.515 9 C 0.182 3.818 10 C -0.508 4.508 11 H 0.062 0.938 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 H 0.052 0.948 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.058 0.942 22 H 0.048 0.952 23 H 0.372 0.628 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.031 0.969 31 H -0.002 1.002 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -1.599 -8.496 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.008 3.992 3 C -0.013 4.013 4 O -0.381 6.381 5 C -0.160 4.160 6 C -0.173 4.173 7 C -0.069 4.069 8 N -0.241 5.241 9 C 0.056 3.944 10 C -0.546 4.546 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.726 3.274 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.201 1.201 18 H 0.071 0.929 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.217 0.783 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.175 -2.212 -8.212 9.474 hybrid contribution 1.387 0.540 0.695 1.643 sum -2.788 -1.672 -7.516 8.189 Atomic orbital electron populations 1.21632 0.93975 1.00988 1.00903 1.21661 0.96113 0.90763 0.90624 1.22932 0.97516 0.93654 0.87163 1.86397 1.76887 1.28501 1.46347 1.22722 1.00620 0.95323 0.97321 1.22783 1.00750 0.96707 0.97087 1.22832 0.95784 0.95038 0.93287 1.63814 1.37982 1.09288 1.13012 1.19976 0.90998 0.92010 0.91372 1.21147 1.28893 1.02316 1.02280 0.91950 1.24984 0.95979 0.95011 0.98603 1.69941 1.34595 1.13572 1.35911 0.86553 0.78357 0.79418 0.83049 1.20272 1.21375 1.20140 0.92872 0.92839 0.93015 0.92393 0.93423 0.78274 0.92073 0.91505 0.91827 0.91393 0.93844 0.90968 0.95130 0.98447 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 8.57 37.16 0.32 -1.73 16 2 C 0.10 1.88 0.97 -130.61 -0.13 1.75 16 3 C 0.07 1.24 4.57 37.16 0.17 1.41 16 4 O -0.58 -9.29 12.68 -35.23 -0.45 -9.74 16 5 C -0.12 -2.04 5.73 -24.91 -0.14 -2.18 16 6 C -0.14 -2.18 7.08 -24.59 -0.17 -2.36 16 7 C 0.06 1.17 6.01 -2.30 -0.01 1.16 16 8 N -0.52 -11.40 4.81 -217.17 -1.04 -12.45 16 9 C 0.18 4.71 3.44 -4.98 -0.02 4.69 16 10 C -0.51 -14.33 8.68 -34.44 -0.30 -14.63 16 11 H 0.06 1.75 7.74 -52.48 -0.41 1.35 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 14 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 19 H 0.05 0.87 7.66 -51.93 -0.40 0.47 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.06 1.18 6.43 -51.93 -0.33 0.84 16 22 H 0.05 0.96 6.87 -51.93 -0.36 0.60 16 23 H 0.37 4.32 9.12 45.56 0.42 4.73 16 24 H 0.06 1.04 7.84 -51.93 -0.41 0.63 16 25 H 0.07 1.03 7.84 -51.93 -0.41 0.62 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.93 7.69 -51.93 -0.40 0.53 16 29 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.03 0.84 6.29 -51.93 -0.33 0.52 16 31 H 0.00 -0.06 6.72 -51.93 -0.35 -0.41 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 255.37 15.07 3.85 3.85 Total: -1.00 -30.26 255.37 -6.53 -36.79 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.22 Total: 1.11 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -0.38 Total: -10.41 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.31 Total: -38.29 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.45 Total: -9.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.26 -6.53 -36.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723038464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.614 kcal (2) G-P(sol) polarization free energy of solvation -30.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds