Wall clock time and date at job start Mon Mar 30 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86796 * 120.00359 * 2 1 4 4 H 1.48492 * 109.47263 * 240.00018 * 3 2 1 5 5 H 1.48507 * 109.46676 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47074 * 119.99789 * 3 2 1 7 7 C 1.38817 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99667 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00346 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00282 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47181 * 180.02562 * 10 9 7 12 12 H 1.09004 * 108.77870 * 303.40587 * 11 10 9 13 13 C 1.54153 * 108.81370 * 185.00315 * 11 10 9 14 14 C 1.53470 * 111.65848 * 197.63716 * 13 11 10 15 15 C 1.51073 * 111.29456 * 319.24051 * 14 13 11 16 16 O 1.43390 * 107.46821 * 94.47802 * 15 14 13 17 17 C 1.36320 * 118.04049 * 276.35649 * 16 15 14 18 18 C 1.51007 * 108.75389 * 61.80950 * 11 10 9 19 19 H 0.97003 * 120.00316 * 0.02562 * 1 2 3 20 20 H 0.97008 * 119.99851 * 0.02562 * 9 7 2 21 21 H 1.08993 * 109.47205 * 60.00073 * 10 9 7 22 22 H 1.09004 * 109.46745 * 299.99649 * 10 9 7 23 23 H 1.08995 * 109.04606 * 77.06899 * 13 11 10 24 24 H 1.09002 * 109.03892 * 318.19517 * 13 11 10 25 25 H 1.08996 * 109.11280 * 198.77336 * 14 13 11 26 26 H 1.09001 * 109.11100 * 79.70585 * 14 13 11 27 27 H 1.09001 * 109.85673 * 334.99297 * 15 14 13 28 28 H 1.08998 * 109.91820 * 214.01051 * 15 14 13 29 29 H 1.09002 * 109.15853 * 182.29285 * 17 16 15 30 30 H 1.09003 * 109.15464 * 301.52425 * 17 16 15 31 31 H 1.09001 * 109.55808 * 93.23947 * 18 11 10 32 32 H 1.08998 * 109.48277 * 333.07856 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6963 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8198 0.0008 12 1 0.4027 -4.7170 0.8615 13 6 1.8452 -6.1422 0.1292 14 6 0.9935 -7.3469 -0.2935 15 6 -0.4259 -7.2181 0.2075 16 8 -1.2014 -6.6269 -0.8437 17 6 -1.1897 -5.2689 -0.9627 18 6 0.2362 -4.7501 -1.2605 19 1 -0.4851 0.8400 -0.0004 20 1 0.3554 -2.3881 -0.0002 21 1 2.6838 -3.7143 0.8921 22 1 2.6852 -3.7150 -0.8879 23 1 2.1559 -6.2725 1.1658 24 1 2.7318 -6.0941 -0.5030 25 1 1.4347 -8.2565 0.1140 26 1 0.9834 -7.4127 -1.3815 27 1 -0.4505 -6.5789 1.0901 28 1 -0.8240 -8.2028 0.4525 29 1 -1.8542 -4.9753 -1.7754 30 1 -1.5447 -4.8253 -0.0325 31 1 0.6947 -5.3682 -2.0324 32 1 0.1834 -3.7170 -1.6040 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885300766.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:32 Heat of formation + Delta-G solvation = -48.831036 kcal Electronic energy + Delta-G solvation = -13221.435884 eV Core-core repulsion = 10988.824443 eV Total energy + Delta-G solvation = -2232.611441 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61652 -35.98576 -33.71862 -32.19746 -30.31439 -27.27641 -25.85936 -23.77550 -21.98323 -21.30030 -19.05593 -17.15565 -16.13326 -15.96264 -15.24658 -14.97121 -14.31501 -13.46283 -13.23697 -13.01079 -12.93566 -12.05332 -11.87107 -11.53225 -11.17828 -11.00802 -10.78448 -10.47468 -10.36878 -10.13241 -9.96843 -9.79835 -9.61334 -9.17065 -8.84270 -6.89132 -5.74620 -3.02801 3.45272 3.49321 3.50610 4.03385 4.60683 4.93552 5.08079 5.14706 5.21646 5.39529 5.52300 5.59144 5.69191 5.81938 5.84607 6.00839 6.04214 6.12025 6.25910 6.35519 6.39599 6.40344 6.53225 6.76662 6.87430 7.00109 7.71493 7.82579 8.44752 9.55540 10.14375 10.49399 11.48338 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.065437 B = 0.007890 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.791635 B = 3547.966352 C = 3847.406994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.156 3.844 11 C -0.098 4.098 12 H 0.064 0.936 13 C -0.112 4.112 14 C -0.150 4.150 15 C 0.066 3.934 16 O -0.390 6.390 17 C 0.074 3.926 18 C -0.157 4.157 19 H 0.255 0.745 20 H 0.384 0.616 21 H 0.016 0.984 22 H 0.018 0.982 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -13.371 -0.267 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.116 4.116 12 H 0.083 0.917 13 C -0.150 4.150 14 C -0.187 4.187 15 C -0.009 4.009 16 O -0.308 6.308 17 C -0.004 4.004 18 C -0.195 4.195 19 H 0.065 0.935 20 H 0.218 0.782 21 H 0.034 0.966 22 H 0.036 0.964 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.167 -13.343 -0.378 13.349 hybrid contribution 0.465 1.226 0.242 1.333 sum 0.631 -12.117 -0.136 12.134 Atomic orbital electron populations 1.69645 1.05086 1.25732 1.57853 1.24735 0.95537 0.97662 1.03118 0.86257 0.78509 0.83545 0.77822 1.21295 1.21669 1.21326 1.19205 0.91022 0.84271 1.42612 0.91314 1.42420 1.05870 1.00002 1.89390 1.20729 0.93262 0.85567 0.97576 1.21261 0.97708 0.94531 0.98136 0.91733 1.21859 0.98400 0.93585 1.01154 1.21976 0.96087 0.98278 1.02404 1.22414 0.90633 0.97862 0.90020 1.86278 1.69871 1.21669 1.52998 1.21820 0.96609 0.81120 1.00811 1.22361 0.95670 1.03524 0.97900 0.93485 0.78198 0.96595 0.96415 0.92274 0.91965 0.91741 0.90865 0.92514 0.89656 0.89279 0.94411 0.91785 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.96 4.94 -59.91 -0.30 -19.26 16 10 C 0.16 3.27 5.46 -4.04 -0.02 3.24 16 11 C -0.10 -1.65 1.77 -91.02 -0.16 -1.81 16 12 H 0.06 1.14 6.60 -51.93 -0.34 0.80 16 13 C -0.11 -1.53 5.29 -25.89 -0.14 -1.67 16 14 C -0.15 -1.79 5.43 -27.46 -0.15 -1.94 16 15 C 0.07 0.83 6.48 36.19 0.23 1.06 16 16 O -0.39 -5.80 9.90 -20.77 -0.21 -6.00 16 17 C 0.07 1.14 6.39 38.01 0.24 1.39 16 18 C -0.16 -2.63 4.95 -26.88 -0.13 -2.76 16 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 20 H 0.38 10.34 6.92 -40.82 -0.28 10.05 16 21 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 22 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.84 7.99 -51.93 -0.41 0.42 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.93 7.31 -51.93 -0.38 0.55 16 27 H 0.06 0.72 6.67 -51.93 -0.35 0.37 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.04 0.60 7.68 -51.93 -0.40 0.20 16 31 H 0.06 1.02 7.16 -51.93 -0.37 0.65 16 32 H 0.09 1.79 6.61 -51.93 -0.34 1.45 16 LS Contribution 251.98 15.07 3.80 3.80 Total: -1.00 -30.52 251.98 -6.34 -36.85 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.96 Total: 4.77 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.37 Total: -10.04 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.43 Total: -47.06 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.21 Total: -6.00 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.52 -6.34 -36.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885300766.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.978 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds