Wall clock time and date at job start Mon Mar 30 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47869 * 2 1 4 4 N 1.46499 * 109.47198 * 304.97860 * 3 2 1 5 5 C 1.36939 * 119.99933 * 180.27608 * 4 3 2 6 6 H 1.08001 * 119.99700 * 359.72658 * 5 4 3 7 7 C 1.38810 * 120.00095 * 179.71972 * 5 4 3 8 8 N 1.31624 * 119.99740 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00044 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47201 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47080 * 120.00466 * 9 7 5 12 12 H 1.48506 * 109.47018 * 240.00565 * 9 7 5 13 13 C 1.53088 * 109.49115 * 120.02973 * 2 1 3 14 14 C 1.53174 * 109.16492 * 62.38206 * 13 2 1 15 15 C 1.53181 * 109.03872 * 56.97692 * 14 13 2 16 16 C 1.53084 * 109.16262 * 303.02414 * 15 14 13 17 17 O 1.42907 * 109.41901 * 57.60838 * 16 15 14 18 18 H 1.09001 * 109.47470 * 59.99570 * 1 2 3 19 19 H 1.09006 * 109.46950 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.47366 * 299.99573 * 1 2 3 21 21 H 1.09009 * 109.46730 * 184.97647 * 3 2 1 22 22 H 1.08998 * 109.46846 * 64.98192 * 3 2 1 23 23 H 0.97001 * 119.99790 * 359.97438 * 4 3 2 24 24 H 0.96998 * 119.99409 * 179.97438 * 8 7 5 25 25 H 1.09005 * 109.52378 * 182.28896 * 13 2 1 26 26 H 1.08998 * 109.52233 * 302.47267 * 13 2 1 27 27 H 1.08998 * 109.54198 * 297.11303 * 14 13 2 28 28 H 1.08999 * 109.54690 * 176.84679 * 14 13 2 29 29 H 1.08993 * 109.52123 * 183.11581 * 15 14 13 30 30 H 1.09000 * 109.51791 * 62.92690 * 15 14 13 31 31 H 1.08994 * 109.48197 * 297.62240 * 16 15 14 32 32 H 1.09003 * 109.48967 * 177.59691 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.4565 2.1669 -1.1317 5 6 1.7746 3.4824 -1.3400 6 1 2.4524 3.9871 -0.6674 7 6 1.2262 4.1673 -2.4157 8 7 0.3999 3.5522 -3.2351 9 14 1.6596 5.9620 -2.6993 10 1 2.6012 6.4164 -1.6449 11 1 2.2987 6.1123 -4.0313 12 1 0.4237 6.7838 -2.6476 13 6 2.0407 -0.7222 1.2494 14 6 1.5762 -2.1814 1.2120 15 6 2.0769 -2.8321 -0.0812 16 6 1.5647 -2.0284 -1.2791 17 8 2.0065 -0.6740 -1.1665 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 3.1266 1.4435 -0.0892 22 1 1.7516 1.9299 0.9312 23 1 0.8481 1.7135 -1.7360 24 1 0.0164 4.0309 -3.9866 25 1 3.1300 -0.6871 1.2707 26 1 1.6423 -0.2358 2.1398 27 1 0.4873 -2.2182 1.2408 28 1 1.9832 -2.7158 2.0704 29 1 1.7043 -3.8546 -0.1423 30 1 3.1669 -2.8397 -0.0867 31 1 0.4752 -2.0551 -1.2958 32 1 1.9530 -2.4620 -2.2008 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885300970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:23 Heat of formation + Delta-G solvation = -68.585036 kcal Electronic energy + Delta-G solvation = -13410.787629 eV Core-core repulsion = 11177.319589 eV Total energy + Delta-G solvation = -2233.468039 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.86612 -36.62597 -34.56246 -34.06339 -31.86342 -29.01260 -27.51272 -25.37606 -24.40770 -22.28854 -20.07192 -19.28270 -17.13262 -16.94646 -16.55782 -15.80737 -15.60371 -15.11342 -14.97569 -14.23041 -13.92728 -13.49181 -13.46079 -13.06999 -12.93244 -12.78859 -12.45047 -12.17723 -12.01249 -11.86100 -11.77803 -11.47572 -11.00137 -10.84523 -10.19401 -8.97922 -7.93579 -5.22165 1.46435 1.48531 1.58612 2.56548 2.93049 3.40065 3.75018 3.88297 3.98012 4.03430 4.16621 4.32373 4.37872 4.54331 4.60344 4.73072 4.85829 4.91202 4.98573 5.03570 5.05184 5.10115 5.15089 5.29741 5.33064 5.47878 5.56013 6.28114 6.52187 7.34460 8.11267 8.36293 9.30559 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.070615 B = 0.008320 C = 0.008012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.419006 B = 3364.634635 C = 3493.702042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.110 3.890 3 C 0.161 3.839 4 N -0.739 5.739 5 C -0.247 4.247 6 H 0.076 0.924 7 C -0.079 4.079 8 N -0.970 5.970 9 Si 0.978 3.022 10 H -0.265 1.265 11 H -0.294 1.294 12 H -0.290 1.290 13 C -0.136 4.136 14 C -0.118 4.118 15 C -0.148 4.148 16 C 0.045 3.955 17 O -0.398 6.398 18 H 0.037 0.963 19 H 0.078 0.922 20 H 0.070 0.930 21 H 0.014 0.986 22 H 0.041 0.959 23 H 0.376 0.624 24 H 0.251 0.749 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -12.771 9.418 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.071 3.929 3 C 0.034 3.966 4 N -0.382 5.382 5 C -0.379 4.379 6 H 0.093 0.907 7 C -0.271 4.271 8 N -0.621 5.621 9 Si 0.806 3.194 10 H -0.190 1.190 11 H -0.221 1.221 12 H -0.217 1.217 13 C -0.174 4.174 14 C -0.155 4.155 15 C -0.186 4.186 16 C -0.032 4.032 17 O -0.318 6.318 18 H 0.056 0.944 19 H 0.097 0.903 20 H 0.089 0.911 21 H 0.032 0.968 22 H 0.059 0.941 23 H 0.210 0.790 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.695 -12.527 9.348 15.722 hybrid contribution -0.203 0.858 -0.662 1.102 sum 1.492 -11.670 8.686 14.624 Atomic orbital electron populations 1.22274 0.95451 1.02303 1.02193 1.21685 0.93560 0.91368 0.86267 1.20845 0.95450 0.89558 0.90712 1.42554 1.55172 1.09258 1.31211 1.19736 1.21499 0.88436 1.08181 0.90657 1.25626 1.00578 1.02852 0.98045 1.69858 1.36484 1.37533 1.18264 0.85008 0.77252 0.79658 0.77434 1.18976 1.22080 1.21740 1.22086 1.01456 0.97027 0.96825 1.21627 1.01498 0.94156 0.98232 1.22145 1.01577 1.00106 0.94727 1.22785 0.99052 0.81818 0.99496 1.88062 1.73776 1.25753 1.44193 0.94435 0.90326 0.91124 0.96844 0.94106 0.79032 0.94049 0.91555 0.89714 0.90988 0.89491 0.88736 0.91643 0.92894 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.57 7.71 71.98 0.55 -5.01 16 2 C 0.11 3.91 0.77 -10.76 -0.01 3.90 16 3 C 0.16 7.07 5.43 86.38 0.47 7.54 16 4 N -0.74 -40.62 5.24 -343.44 -1.80 -42.41 16 5 C -0.25 -14.60 9.99 84.03 0.84 -13.76 16 6 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 7 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 8 N -0.97 -62.10 13.06 21.65 0.28 -61.81 16 9 Si 0.98 47.86 29.55 68.60 2.03 49.88 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 13 C -0.14 -3.55 4.92 30.68 0.15 -3.40 16 14 C -0.12 -2.38 5.72 30.71 0.18 -2.20 16 15 C -0.15 -3.10 6.14 30.68 0.19 -2.91 16 16 C 0.04 1.25 6.51 72.01 0.47 1.72 16 17 O -0.40 -15.37 10.18 -148.98 -1.52 -16.88 16 18 H 0.04 1.55 6.58 -2.39 -0.02 1.53 16 19 H 0.08 2.16 4.98 -2.38 -0.01 2.15 16 20 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 21 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.38 22.14 6.19 -92.71 -0.57 21.56 16 24 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 25 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.07 1.37 6.62 -2.39 -0.02 1.36 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.42 6.34 -2.39 -0.02 1.40 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -69.22 252.16 2.82 -66.39 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.52 Total: 23.26 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 3.31 Total: -18.42 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -1.52 Total: -104.23 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -1.52 Total: -16.88 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -69.22 2.82 -66.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885300970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.191 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds