Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47372 * 2 1 4 4 C 1.53001 * 109.47122 * 120.00673 * 2 1 3 5 5 H 1.08997 * 109.99946 * 60.87258 * 4 2 1 6 6 C 1.54338 * 109.98743 * 299.83261 * 4 2 1 7 7 C 1.55155 * 103.02348 * 218.66765 * 6 4 2 8 8 H 1.08988 * 111.01121 * 153.38266 * 7 6 4 9 9 O 1.42900 * 111.03437 * 277.22364 * 7 6 4 10 10 C 1.54909 * 101.57919 * 35.30480 * 7 6 4 11 11 N 1.47015 * 109.88067 * 181.97120 * 4 2 1 12 12 C 1.36938 * 125.65113 * 298.38512 * 11 4 2 13 13 H 1.08001 * 119.99523 * 345.00848 * 12 11 4 14 14 C 1.38806 * 120.00444 * 164.72452 * 12 11 4 15 15 N 1.31621 * 119.99798 * 0.28454 * 14 12 11 16 16 Si 1.86796 * 120.00265 * 180.27925 * 14 12 11 17 17 H 1.48497 * 109.47109 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47111 * 120.00193 * 16 14 12 19 19 H 1.48497 * 109.47503 * 240.00242 * 16 14 12 20 20 H 1.09000 * 109.47079 * 65.52907 * 1 2 3 21 21 H 1.08996 * 109.46993 * 185.53802 * 1 2 3 22 22 H 1.09003 * 109.46457 * 305.53559 * 1 2 3 23 23 H 1.09007 * 109.46957 * 240.00037 * 2 1 3 24 24 H 1.09001 * 109.46955 * 180.02562 * 3 2 1 25 25 H 1.08990 * 109.47263 * 300.00162 * 3 2 1 26 26 H 1.09007 * 109.46630 * 60.00429 * 3 2 1 27 27 H 1.09004 * 110.85123 * 100.20199 * 6 4 2 28 28 H 1.09004 * 110.51887 * 336.98157 * 6 4 2 29 29 H 0.96701 * 114.00135 * 173.66635 * 9 7 6 30 30 H 1.09006 * 110.36843 * 204.15190 * 10 7 6 31 31 H 1.09001 * 110.45741 * 81.88068 * 10 7 6 32 32 H 0.97007 * 120.00225 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6943 -1.7551 1.2500 6 6 1.5356 -0.0008 2.5174 7 6 2.7528 -0.0867 3.4758 8 1 2.7453 0.7352 4.1915 9 8 2.7884 -1.3473 4.1479 10 6 3.9374 0.0487 2.4869 11 7 3.5094 -0.6856 1.2823 12 6 4.3425 -1.2379 0.3463 13 1 3.9562 -1.9516 -0.3663 14 6 5.6821 -0.8761 0.3096 15 7 6.1528 -0.0063 1.1781 16 14 6.8168 -1.6237 -0.9721 17 1 6.0482 -2.5662 -1.8242 18 1 7.3869 -0.5446 -1.8182 19 1 7.9173 -2.3540 -0.2934 20 1 -0.3633 0.4257 -0.9353 21 1 -0.3633 -1.0228 0.0992 22 1 -0.3632 0.5973 0.8363 23 1 1.8934 -0.5139 -0.8900 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8901 27 1 0.6743 -0.5177 2.9406 28 1 1.2923 1.0382 2.2952 29 1 3.5819 -1.4854 4.6831 30 1 4.8361 -0.4028 2.9072 31 1 4.1166 1.0971 2.2483 32 1 7.0891 0.2463 1.1528 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885302540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = -35.823319 kcal Electronic energy + Delta-G solvation = -13809.255786 eV Core-core repulsion = 11577.208402 eV Total energy + Delta-G solvation = -2232.047384 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.51575 -35.42278 -33.44351 -31.46017 -28.91628 -26.75398 -26.34232 -24.43007 -21.41142 -20.23357 -18.23650 -16.84480 -16.28862 -14.93836 -14.55382 -13.99558 -13.95738 -12.91971 -12.66851 -12.49075 -12.08263 -11.89377 -11.29188 -11.16780 -10.92093 -10.86471 -10.69152 -10.35352 -10.18788 -9.90088 -9.84541 -9.67988 -9.42052 -9.00747 -8.56243 -6.68667 -5.71057 -3.03881 3.40731 3.47423 3.49204 4.52759 4.93114 5.35813 5.45544 5.60400 5.64239 5.80067 5.90335 5.96117 6.03404 6.18443 6.30345 6.36899 6.43875 6.52774 6.55438 6.67081 6.87921 7.07834 7.16467 7.31565 7.44414 7.57963 7.80101 8.29163 8.41004 9.25011 9.86747 10.56627 11.41857 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032072 B = 0.014597 C = 0.011489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.836948 B = 1917.761780 C = 2436.517132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.134 4.134 4 C 0.170 3.830 5 H 0.032 0.968 6 C -0.120 4.120 7 C 0.065 3.935 8 H 0.049 0.951 9 O -0.563 6.563 10 C 0.150 3.850 11 N -0.588 5.588 12 C -0.216 4.216 13 H 0.073 0.927 14 C -0.008 4.008 15 N -0.922 5.922 16 Si 0.907 3.093 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.292 1.292 20 H 0.043 0.957 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.042 0.958 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.371 0.629 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 1.665 2.036 7.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 C -0.192 4.192 4 C 0.062 3.938 5 H 0.050 0.950 6 C -0.157 4.157 7 C 0.005 3.995 8 H 0.067 0.933 9 O -0.369 6.369 10 C 0.024 3.976 11 N -0.311 5.311 12 C -0.344 4.344 13 H 0.091 0.909 14 C -0.204 4.204 15 N -0.570 5.570 16 Si 0.738 3.262 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.219 1.219 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.218 0.782 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.752 1.594 1.667 8.088 hybrid contribution 1.246 -0.194 -0.480 1.349 sum -6.506 1.400 1.186 6.760 Atomic orbital electron populations 1.21849 0.96959 1.00791 1.00506 1.21556 0.93263 0.97259 1.00594 1.21721 1.03233 0.95288 0.98918 1.20923 0.85783 0.95676 0.91383 0.94989 1.22705 0.96716 1.00792 0.95508 1.23352 0.98596 0.84382 0.93137 0.93304 1.86394 1.45809 1.37960 1.66707 1.22054 0.93593 0.96072 0.85869 1.44346 0.98796 1.64234 1.23754 1.19015 0.89892 1.17351 1.08183 0.90875 1.24848 0.97532 0.98836 0.99182 1.69921 1.13777 1.35979 1.37351 0.86105 0.80846 0.78152 0.81092 1.20509 1.21845 1.21903 0.93808 0.93405 0.93240 0.91648 0.90741 0.94865 0.93929 0.91798 0.90295 0.78240 0.91091 0.95067 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.85 37.16 0.33 -1.87 16 2 C -0.11 -2.03 2.68 -90.62 -0.24 -2.27 16 3 C -0.13 -2.56 8.77 37.16 0.33 -2.23 16 4 C 0.17 3.62 2.95 -66.95 -0.20 3.43 16 5 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 6 C -0.12 -2.22 5.05 -24.89 -0.13 -2.35 16 7 C 0.06 1.28 4.43 -24.58 -0.11 1.17 16 8 H 0.05 0.85 8.14 -51.94 -0.42 0.43 16 9 O -0.56 -11.03 13.47 -35.23 -0.47 -11.51 16 10 C 0.15 3.57 5.14 -2.53 -0.01 3.56 16 11 N -0.59 -14.81 2.30 -162.57 -0.37 -15.18 16 12 C -0.22 -5.97 9.84 -15.06 -0.15 -6.12 16 13 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 14 C -0.01 -0.22 5.47 -17.43 -0.10 -0.32 16 15 N -0.92 -26.72 10.58 55.49 0.59 -26.13 16 16 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.71 7.25 -51.93 -0.38 0.33 16 23 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 24 H 0.07 1.71 7.57 -51.93 -0.39 1.32 16 25 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.04 0.74 6.08 -51.92 -0.32 0.43 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.08 1.35 5.45 -51.93 -0.28 1.07 16 29 H 0.37 5.94 9.11 45.56 0.42 6.36 16 30 H 0.07 1.88 6.95 -51.93 -0.36 1.52 16 31 H 0.03 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 253.91 15.07 3.83 3.83 Total: -1.00 -30.02 253.91 -5.97 -35.98 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.23 Total: 2.84 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -0.28 Total: -7.02 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.21 Total: -41.32 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.47 Total: -11.51 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.02 -5.97 -35.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885302540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.160 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds