Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47372 * 2 1 4 4 C 1.53001 * 109.47122 * 120.00673 * 2 1 3 5 5 H 1.08997 * 109.99946 * 60.87258 * 4 2 1 6 6 C 1.54338 * 109.98743 * 299.83261 * 4 2 1 7 7 C 1.55155 * 103.02348 * 218.66765 * 6 4 2 8 8 H 1.08988 * 111.01121 * 153.38266 * 7 6 4 9 9 O 1.42900 * 111.03437 * 277.22364 * 7 6 4 10 10 C 1.54909 * 101.57919 * 35.30480 * 7 6 4 11 11 N 1.47015 * 109.88067 * 181.97120 * 4 2 1 12 12 C 1.36938 * 125.65113 * 298.38512 * 11 4 2 13 13 H 1.08001 * 119.99523 * 345.00848 * 12 11 4 14 14 C 1.38806 * 120.00444 * 164.72452 * 12 11 4 15 15 N 1.31621 * 119.99798 * 0.28454 * 14 12 11 16 16 Si 1.86796 * 120.00265 * 180.27925 * 14 12 11 17 17 H 1.48497 * 109.47109 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47111 * 120.00193 * 16 14 12 19 19 H 1.48497 * 109.47503 * 240.00242 * 16 14 12 20 20 H 1.09000 * 109.47079 * 65.52907 * 1 2 3 21 21 H 1.08996 * 109.46993 * 185.53802 * 1 2 3 22 22 H 1.09003 * 109.46457 * 305.53559 * 1 2 3 23 23 H 1.09007 * 109.46957 * 240.00037 * 2 1 3 24 24 H 1.09001 * 109.46955 * 180.02562 * 3 2 1 25 25 H 1.08990 * 109.47263 * 300.00162 * 3 2 1 26 26 H 1.09007 * 109.46630 * 60.00429 * 3 2 1 27 27 H 1.09004 * 110.85123 * 100.20199 * 6 4 2 28 28 H 1.09004 * 110.51887 * 336.98157 * 6 4 2 29 29 H 0.96701 * 114.00135 * 173.66635 * 9 7 6 30 30 H 1.09006 * 110.36843 * 204.15190 * 10 7 6 31 31 H 1.09001 * 110.45741 * 81.88068 * 10 7 6 32 32 H 0.97007 * 120.00225 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6943 -1.7551 1.2500 6 6 1.5356 -0.0008 2.5174 7 6 2.7528 -0.0867 3.4758 8 1 2.7453 0.7352 4.1915 9 8 2.7884 -1.3473 4.1479 10 6 3.9374 0.0487 2.4869 11 7 3.5094 -0.6856 1.2823 12 6 4.3425 -1.2379 0.3463 13 1 3.9562 -1.9516 -0.3663 14 6 5.6821 -0.8761 0.3096 15 7 6.1528 -0.0063 1.1781 16 14 6.8168 -1.6237 -0.9721 17 1 6.0482 -2.5662 -1.8242 18 1 7.3869 -0.5446 -1.8182 19 1 7.9173 -2.3540 -0.2934 20 1 -0.3633 0.4257 -0.9353 21 1 -0.3633 -1.0228 0.0992 22 1 -0.3632 0.5973 0.8363 23 1 1.8934 -0.5139 -0.8900 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6768 1.9563 0.8901 27 1 0.6743 -0.5177 2.9406 28 1 1.2923 1.0382 2.2952 29 1 3.5819 -1.4854 4.6831 30 1 4.8361 -0.4028 2.9072 31 1 4.1166 1.0971 2.2483 32 1 7.0891 0.2463 1.1528 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885302540.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = -56.541624 kcal Electronic energy + Delta-G solvation = -13810.154199 eV Core-core repulsion = 11577.208402 eV Total energy + Delta-G solvation = -2232.945798 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.19142 -36.97594 -35.30645 -33.27222 -30.77405 -28.46177 -27.73747 -26.41143 -23.03743 -21.99282 -19.92730 -18.68717 -17.99499 -16.81084 -16.19568 -15.85162 -15.64686 -14.46418 -14.34922 -14.17137 -13.80327 -13.26729 -13.13089 -12.80972 -12.70612 -12.57376 -12.45839 -12.11109 -11.96129 -11.52880 -11.50668 -11.41786 -11.08806 -10.68233 -10.62779 -8.71573 -7.84391 -5.17782 1.43816 1.44588 1.54439 2.50169 3.32200 3.48498 3.68100 4.02595 4.04729 4.26159 4.33889 4.47282 4.53635 4.73361 4.84213 4.91438 4.95516 5.06423 5.14375 5.25889 5.35266 5.41168 5.48979 5.59733 5.65320 5.70806 5.75249 6.27826 6.95256 7.15082 7.83286 8.51159 9.27093 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.032072 B = 0.014597 C = 0.011489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.836948 B = 1917.761780 C = 2436.517132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 C -0.125 4.125 4 C 0.161 3.839 5 H 0.016 0.984 6 C -0.110 4.110 7 C 0.075 3.925 8 H 0.082 0.918 9 O -0.574 6.574 10 C 0.156 3.844 11 N -0.605 5.605 12 C -0.224 4.224 13 H 0.067 0.933 14 C -0.060 4.060 15 N -0.947 5.947 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.293 1.293 19 H -0.293 1.293 20 H 0.060 0.940 21 H 0.052 0.948 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.025 0.975 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.099 0.901 29 H 0.385 0.615 30 H 0.036 0.964 31 H 0.007 0.993 32 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 1.942 2.186 9.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 C -0.182 4.182 4 C 0.054 3.946 5 H 0.034 0.966 6 C -0.147 4.147 7 C 0.016 3.984 8 H 0.099 0.901 9 O -0.381 6.381 10 C 0.030 3.970 11 N -0.329 5.329 12 C -0.354 4.354 13 H 0.085 0.915 14 C -0.253 4.253 15 N -0.596 5.596 16 Si 0.797 3.203 17 H -0.195 1.195 18 H -0.220 1.220 19 H -0.220 1.220 20 H 0.079 0.921 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.234 0.766 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.595 1.860 1.822 9.942 hybrid contribution 1.797 -0.311 -0.518 1.896 sum -7.798 1.549 1.304 8.056 Atomic orbital electron populations 1.21756 0.93304 1.01785 1.02292 1.21463 0.96218 0.96514 0.98134 1.21607 1.00008 0.95742 1.00847 1.21122 0.83698 0.95604 0.94140 0.96640 1.22716 0.96705 1.01809 0.93459 1.23275 0.96670 0.85487 0.93011 0.90079 1.86359 1.46813 1.38096 1.66842 1.21881 0.94419 0.94078 0.86620 1.44570 1.00530 1.63962 1.23807 1.19233 0.90620 1.17137 1.08412 0.91471 1.25544 0.98886 0.99789 1.01117 1.70104 1.13572 1.37287 1.38680 0.85163 0.78865 0.77376 0.78919 1.19521 1.21987 1.21997 0.92089 0.92883 0.91374 0.94362 0.95541 0.92796 0.92087 0.89710 0.88318 0.76610 0.94520 0.97466 0.94499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 8.85 71.98 0.64 -3.01 16 2 C -0.10 -3.80 2.68 -10.79 -0.03 -3.83 16 3 C -0.12 -4.59 8.77 71.98 0.63 -3.96 16 4 C 0.16 6.71 2.95 45.35 0.13 6.84 16 5 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 6 C -0.11 -3.75 5.05 31.79 0.16 -3.59 16 7 C 0.08 2.81 4.43 31.99 0.14 2.95 16 8 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 9 O -0.57 -21.43 13.47 -148.98 -2.01 -23.43 16 10 C 0.16 7.53 5.14 86.85 0.45 7.98 16 11 N -0.60 -30.92 2.30 -668.24 -1.54 -32.46 16 12 C -0.22 -12.72 9.84 84.03 0.83 -11.90 16 13 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 14 C -0.06 -3.45 5.47 84.86 0.46 -2.98 16 15 N -0.95 -56.56 10.58 21.65 0.23 -56.33 16 16 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 19 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.07 1.63 7.25 -2.39 -0.02 1.61 16 23 H 0.04 1.59 8.04 -2.38 -0.02 1.57 16 24 H 0.03 1.21 7.57 -2.39 -0.02 1.19 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.98 6.08 -2.38 -0.01 1.97 16 27 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.10 2.99 5.45 -2.39 -0.01 2.98 16 29 H 0.39 11.85 9.11 -74.06 -0.67 11.18 16 30 H 0.04 2.00 6.95 -2.38 -0.02 1.98 16 31 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 32 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 Total: -1.00 -65.63 253.91 2.54 -63.09 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.42 Total: 12.04 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 3.41 Total: -11.50 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -1.31 Total: -88.80 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -2.01 Total: -23.43 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -65.63 2.54 -63.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885302540.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.551 kcal (2) G-P(sol) polarization free energy of solvation -65.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds