Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47365 * 2 1 4 4 H 1.08998 * 109.47003 * 54.99814 * 3 2 1 5 5 C 1.52997 * 109.47151 * 174.99833 * 3 2 1 6 6 N 1.46900 * 109.47196 * 294.99646 * 3 2 1 7 7 C 1.47481 * 111.00106 * 273.19414 * 6 3 2 8 8 C 1.53507 * 87.93005 * 221.29325 * 7 6 3 9 9 O 1.42898 * 114.17650 * 272.37299 * 8 7 6 10 10 C 1.50704 * 114.16714 * 139.67208 * 8 7 6 11 11 H 1.08006 * 119.99831 * 266.15940 * 10 8 7 12 12 C 1.37874 * 120.00298 * 86.15628 * 10 8 7 13 13 N 1.31519 * 119.99918 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00116 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47005 * 90.00502 * 14 12 10 16 16 H 1.48507 * 109.47335 * 210.00395 * 14 12 10 17 17 H 1.48500 * 109.47446 * 330.00119 * 14 12 10 18 18 C 1.47473 * 110.99984 * 177.22228 * 6 3 2 19 19 H 1.08997 * 109.47315 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.47026 * 300.00685 * 1 2 3 21 21 H 1.09000 * 109.46607 * 60.00014 * 1 2 3 22 22 H 1.08999 * 109.47026 * 239.99315 * 2 1 3 23 23 H 1.09000 * 109.46607 * 119.99986 * 2 1 3 24 24 H 1.09003 * 109.47316 * 170.11859 * 5 3 2 25 25 H 1.09003 * 109.47292 * 290.11711 * 5 3 2 26 26 H 1.09006 * 109.47374 * 50.11553 * 5 3 2 27 27 H 1.08998 * 113.47373 * 336.06337 * 7 6 3 28 28 H 1.09003 * 113.47233 * 106.52684 * 7 6 3 29 29 H 0.96696 * 114.00139 * 273.85079 * 9 8 7 30 30 H 0.96996 * 120.00182 * 179.97438 * 13 12 10 31 31 H 1.09002 * 113.47747 * 253.47023 * 18 6 3 32 32 H 1.09001 * 113.47781 * 23.94048 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4442 0.1258 6 7 1.6516 2.0992 -1.2553 7 6 2.6521 1.8556 -2.3110 8 6 2.4879 3.3238 -2.7280 9 8 1.4380 3.5505 -3.6705 10 6 3.7791 4.0091 -3.0947 11 1 4.3219 4.5723 -2.3499 12 6 4.2673 3.9172 -4.3808 13 7 3.6060 3.2318 -5.2878 14 14 5.8673 4.7673 -4.8354 15 1 7.0038 3.8401 -4.6032 16 1 5.8312 5.1569 -6.2680 17 1 6.0389 5.9807 -3.9967 18 6 2.0696 3.5134 -1.2632 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.9428 2.4515 -0.0495 25 1 3.8473 1.1194 1.1272 26 1 3.9910 0.7630 -0.6108 27 1 3.6440 1.6224 -1.9237 28 1 2.3185 1.1485 -3.0705 29 1 1.7042 3.4303 -4.5923 30 1 3.9493 3.1674 -6.1927 31 1 1.2424 4.2115 -1.1348 32 1 2.9061 3.7227 -0.5964 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169629893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = -35.893760 kcal Electronic energy + Delta-G solvation = -13570.956813 eV Core-core repulsion = 11338.906374 eV Total energy + Delta-G solvation = -2232.050439 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38947 -37.07085 -34.59852 -34.05895 -30.81592 -28.90228 -26.77144 -26.15599 -24.10215 -21.32953 -19.86984 -19.20807 -17.26778 -17.02191 -16.25541 -15.61143 -15.51442 -14.74319 -14.61713 -14.37960 -13.86891 -13.44145 -13.14978 -12.80929 -12.75920 -12.60931 -12.29905 -12.26060 -12.04492 -11.86310 -11.65412 -11.37577 -11.02686 -10.61165 -10.00283 -9.47286 -8.24129 -6.41886 1.41609 1.43887 1.54162 2.37251 2.96760 3.30625 3.83054 4.00774 4.11526 4.32047 4.35625 4.43471 4.49705 4.53678 4.76827 4.80169 4.85323 4.97801 5.09399 5.14259 5.23381 5.27877 5.30268 5.45890 5.54919 5.68111 5.77775 5.99121 6.45051 6.64255 7.31096 7.57681 8.80997 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053331 B = 0.010286 C = 0.009576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.898121 B = 2721.406844 C = 2923.198773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.179 4.179 6 N -0.469 5.469 7 C -0.019 4.019 8 C 0.216 3.784 9 O -0.586 6.586 10 C -0.554 4.554 11 H 0.066 0.934 12 C 0.025 3.975 13 N -0.921 5.921 14 Si 0.969 3.031 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.269 1.269 18 C 0.008 3.992 19 H 0.060 0.940 20 H 0.057 0.943 21 H 0.039 0.961 22 H 0.044 0.956 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.383 0.617 30 H 0.274 0.726 31 H 0.063 0.937 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -4.104 8.596 9.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 C -0.073 4.073 4 H 0.101 0.899 5 C -0.237 4.237 6 N -0.191 5.191 7 C -0.148 4.148 8 C 0.175 3.825 9 O -0.398 6.398 10 C -0.593 4.593 11 H 0.084 0.916 12 C -0.175 4.175 13 N -0.562 5.562 14 Si 0.793 3.207 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.193 1.193 18 C -0.121 4.121 19 H 0.079 0.921 20 H 0.076 0.924 21 H 0.058 0.942 22 H 0.062 0.938 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.237 0.763 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.704 -4.253 8.886 9.877 hybrid contribution 1.800 0.408 -0.917 2.061 sum 1.097 -3.846 7.969 8.916 Atomic orbital electron populations 1.21612 0.95273 1.01246 1.01549 1.21425 0.96754 0.94356 1.01594 1.22323 0.94384 0.96956 0.93677 0.89934 1.22416 0.96709 1.01957 1.02594 1.69000 1.41220 1.03662 1.05214 1.24665 0.94961 1.00908 0.94308 1.19768 0.85342 0.91090 0.86269 1.86006 1.39423 1.92870 1.21527 1.21848 1.06936 1.33574 0.96897 0.91591 1.25841 1.00881 0.94744 0.95994 1.69384 1.40910 1.41664 1.04286 0.85398 0.78975 0.78859 0.77445 1.19770 1.20602 1.19300 1.24025 0.98950 0.91916 0.97211 0.92056 0.92403 0.94175 0.93755 0.89808 0.92945 0.90018 0.92737 0.90062 0.94281 0.76292 0.91640 0.91846 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.80 71.98 0.71 -3.13 16 2 C -0.10 -2.95 5.53 30.59 0.17 -2.78 16 3 C 0.04 1.16 2.41 44.91 0.11 1.27 16 4 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 5 C -0.18 -5.43 7.72 71.98 0.56 -4.88 16 6 N -0.47 -19.61 5.80 -902.90 -5.24 -24.85 16 7 C -0.02 -0.90 6.68 83.57 0.56 -0.34 16 8 C 0.22 11.26 1.57 -11.20 -0.02 11.25 16 9 O -0.59 -33.40 13.54 -148.98 -2.02 -35.42 16 10 C -0.55 -29.86 8.68 25.60 0.22 -29.63 16 11 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 12 C 0.02 1.31 5.40 84.65 0.46 1.77 16 13 N -0.92 -50.42 11.02 21.45 0.24 -50.19 16 14 Si 0.97 41.67 29.54 68.60 2.03 43.69 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 C 0.01 0.34 6.95 83.57 0.58 0.92 16 19 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.04 1.33 7.75 -2.39 -0.02 1.31 16 22 H 0.04 1.39 8.06 -2.39 -0.02 1.37 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 24 H 0.05 1.75 5.84 -2.39 -0.01 1.73 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.75 6.51 -2.38 -0.02 1.74 16 27 H 0.08 3.67 4.78 -2.39 -0.01 3.66 16 28 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.38 22.24 6.33 -74.06 -0.47 21.78 16 30 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.08 3.34 5.93 -2.39 -0.01 3.33 16 Total: -1.00 -58.12 254.28 -1.02 -59.14 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.63 Total: 33.17 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.34 Total: -25.56 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -5.00 Total: -75.03 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -2.02 Total: -35.42 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -58.12 -1.02 -59.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169629893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.245 kcal (2) G-P(sol) polarization free energy of solvation -58.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds