Wall clock time and date at job start Mon Mar 30 2020 02:31:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.47179 * 2 1
4 4 H 1.09004 * 109.47154 * 305.00298 * 3 2 1
5 5 C 1.52998 * 109.47129 * 185.00285 * 3 2 1
6 6 N 1.46896 * 109.46873 * 65.00158 * 3 2 1
7 7 C 1.47489 * 110.99821 * 85.54984 * 6 3 2
8 8 C 1.53519 * 87.93308 * 138.70075 * 7 6 3
9 9 O 1.42897 * 114.34103 * 87.63237 * 8 7 6
10 10 C 1.50698 * 114.16728 * 220.32850 * 8 7 6
11 11 H 1.08001 * 119.99993 * 99.30856 * 10 8 7
12 12 C 1.37878 * 119.99897 * 279.30064 * 10 8 7
13 13 N 1.31514 * 119.99910 * 7.63074 * 12 10 8
14 14 Si 1.86796 * 119.99703 * 187.63713 * 12 10 8
15 15 H 1.48493 * 109.47510 * 94.98751 * 14 12 10
16 16 H 1.48510 * 109.46956 * 214.98536 * 14 12 10
17 17 H 1.48499 * 109.47360 * 334.97924 * 14 12 10
18 18 C 1.47487 * 110.99857 * 181.51527 * 6 3 2
19 19 H 1.08999 * 109.47404 * 180.02562 * 1 2 3
20 20 H 1.08995 * 109.47177 * 59.99680 * 1 2 3
21 21 H 1.09005 * 109.46712 * 300.00030 * 1 2 3
22 22 H 1.08995 * 109.47177 * 120.00320 * 2 1 3
23 23 H 1.09000 * 109.46865 * 240.00409 * 2 1 3
24 24 H 1.08994 * 109.47593 * 191.09655 * 5 3 2
25 25 H 1.09002 * 109.47330 * 311.09496 * 5 3 2
26 26 H 1.09001 * 109.47479 * 71.09458 * 5 3 2
27 27 H 1.08998 * 113.47470 * 253.46363 * 7 6 3
28 28 H 1.08997 * 113.47315 * 23.93620 * 7 6 3
29 29 H 0.96697 * 113.99739 * 80.22109 * 9 8 7
30 30 H 0.96996 * 119.99886 * 179.97438 * 13 12 10
31 31 H 1.09001 * 113.47436 * 336.06657 * 18 6 3
32 32 H 1.09000 * 113.47522 * 106.53118 * 18 6 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8418
5 6 3.5648 1.4443 -0.1258
6 7 1.6514 2.0992 1.2552
7 6 2.6369 1.8308 2.3192
8 6 2.4962 3.2995 2.7434
9 8 1.4425 3.5445 3.6770
10 6 3.7962 3.9583 3.1266
11 1 4.3123 4.5880 2.4170
12 6 4.3267 3.7572 4.3832
13 7 3.7821 2.8762 5.1937
14 14 5.8190 4.7363 4.9346
15 1 5.3738 5.9280 5.7004
16 1 6.6778 3.8858 5.7975
17 1 6.5919 5.1731 3.7442
18 6 2.0959 3.5054 1.2757
19 1 -0.3634 -1.0276 0.0005
20 1 -0.3633 0.5139 -0.8899
21 1 -0.3633 0.5139 0.8900
22 1 1.8933 -0.5139 0.8899
23 1 1.8933 -0.5138 -0.8900
24 1 3.9445 2.4470 0.0707
25 1 3.9898 0.7470 0.5962
26 1 3.8467 1.1402 -1.1339
27 1 2.2826 1.1259 3.0713
28 1 3.6279 1.5813 1.9403
29 1 1.6696 3.3287 4.5918
30 1 4.1555 2.7345 6.0776
31 1 2.9426 3.7027 0.6182
32 1 1.2832 4.2196 1.1433
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169629894.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:31:43
Heat of formation + Delta-G solvation = -15.980434 kcal
Electronic energy + Delta-G solvation = -13577.785675 eV
Core-core repulsion = 11346.598743 eV
Total energy + Delta-G solvation = -2231.186932 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-39.66541 -35.31031 -32.90720 -32.10899 -29.43606 -27.00693 -24.92331 -24.42970
-22.71085 -19.72927 -18.08902 -17.22133 -15.58633 -15.02317 -14.47057 -14.01462
-13.85413 -13.37253 -13.13595 -12.70013 -12.15555 -11.71781 -11.37448 -11.29849
-11.10664 -10.91649 -10.79033 -10.56874 -10.41201 -10.32678 -9.94879 -9.91207
-9.05159 -8.65138 -8.07124 -7.72062 -6.22499 -4.30383 3.21650 3.29610
3.32118 4.28923 4.92918 5.03114 5.18329 5.46233 5.59373 5.76481
5.83975 5.95513 5.98413 6.05028 6.17496 6.27441 6.28976 6.37924
6.58574 6.66786 6.70294 6.73564 6.82511 7.18811 7.31067 7.41489
7.78132 8.04648 8.14922 8.70964 9.38900 9.53129 10.83992
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.053580 B = 0.010269 C = 0.009686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.458643 B = 2726.008869 C = 2890.024221
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.106 4.106
3 C 0.041 3.959
4 H 0.068 0.932
5 C -0.185 4.185
6 N -0.466 5.466
7 C -0.026 4.026
8 C 0.245 3.755
9 O -0.567 6.567
10 C -0.536 4.536
11 H 0.064 0.936
12 C 0.072 3.928
13 N -0.892 5.892
14 Si 0.898 3.102
15 H -0.278 1.278
16 H -0.285 1.285
17 H -0.273 1.273
18 C 0.000 4.000
19 H 0.041 0.959
20 H 0.044 0.956
21 H 0.069 0.931
22 H 0.059 0.941
23 H 0.053 0.947
24 H 0.067 0.933
25 H 0.063 0.937
26 H 0.048 0.952
27 H 0.064 0.936
28 H 0.074 0.926
29 H 0.382 0.618
30 H 0.268 0.732
31 H 0.068 0.932
32 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.977 -3.426 -7.016 7.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.144 4.144
3 C -0.068 4.068
4 H 0.087 0.913
5 C -0.243 4.243
6 N -0.189 5.189
7 C -0.155 4.155
8 C 0.204 3.796
9 O -0.376 6.376
10 C -0.575 4.575
11 H 0.083 0.917
12 C -0.130 4.130
13 N -0.531 5.531
14 Si 0.725 3.275
15 H -0.204 1.204
16 H -0.211 1.211
17 H -0.198 1.198
18 C -0.128 4.128
19 H 0.060 0.940
20 H 0.063 0.937
21 H 0.088 0.912
22 H 0.078 0.922
23 H 0.071 0.929
24 H 0.086 0.914
25 H 0.082 0.918
26 H 0.067 0.933
27 H 0.083 0.917
28 H 0.092 0.908
29 H 0.233 0.767
30 H 0.078 0.922
31 H 0.086 0.914
32 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -1.998 -3.519 -7.322 8.366
hybrid contribution 2.052 0.343 0.586 2.162
sum 0.054 -3.176 -6.736 7.448
Atomic orbital electron populations
1.21647 0.95708 1.00183 1.02419 1.21416 0.96370 0.95724 1.00908
1.22138 0.93385 0.95895 0.95431 0.91333 1.22497 0.97773 1.03123
1.00897 1.69105 1.42172 1.04016 1.03563 1.24800 0.94182 1.02807
0.93668 1.19380 0.85547 0.89664 0.85025 1.86065 1.40884 1.89049
1.21563 1.21534 1.06034 1.30469 0.99431 0.91749 1.25044 0.97275
0.94229 0.96490 1.69707 1.42091 1.32396 1.08933 0.86489 0.82135
0.80104 0.78744 1.20387 1.21105 1.19767 1.24080 0.98490 0.91371
0.98890 0.94002 0.93664 0.91232 0.92177 0.92867 0.91379 0.91812
0.93296 0.91719 0.90771 0.76689 0.92223 0.91391 0.91495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.10 9.80 37.16 0.36 -1.74 16
2 C -0.11 -1.65 5.51 -26.73 -0.15 -1.80 16
3 C 0.04 0.71 2.43 -67.71 -0.16 0.55 16
4 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16
5 C -0.18 -3.06 7.74 37.16 0.29 -2.77 16
6 N -0.47 -9.85 5.80 -236.54 -1.37 -11.22 16
7 C -0.03 -0.60 6.65 -7.53 -0.05 -0.65 16
8 C 0.25 6.26 1.40 -91.24 -0.13 6.13 16
9 O -0.57 -15.38 13.52 -35.23 -0.48 -15.86 16
10 C -0.54 -14.39 8.65 -34.44 -0.30 -14.69 16
11 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16
12 C 0.07 1.92 5.33 -17.82 -0.09 1.82 16
13 N -0.89 -24.08 11.66 55.43 0.65 -23.44 16
14 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16
15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
16 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16
17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
18 C 0.00 0.01 6.95 -7.53 -0.05 -0.04 16
19 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16
20 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
21 H 0.07 1.18 7.75 -51.93 -0.40 0.78 16
22 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16
23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
24 H 0.07 1.22 5.75 -51.93 -0.30 0.92 16
25 H 0.06 1.10 6.54 -51.93 -0.34 0.76 16
26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
27 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16
28 H 0.07 1.71 4.83 -51.93 -0.25 1.45 16
29 H 0.38 10.40 7.12 45.56 0.32 10.73 16
30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16
31 H 0.07 1.42 5.85 -51.93 -0.30 1.12 16
32 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16
LS Contribution 255.28 15.07 3.85 3.85
Total: -1.00 -27.31 255.28 -6.85 -34.16
By element:
Atomic # 1 Polarization: 14.41 SS G_CDS: -4.19 Total: 10.21 kcal
Atomic # 6 Polarization: -12.90 SS G_CDS: -0.28 Total: -13.19 kcal
Atomic # 7 Polarization: -33.93 SS G_CDS: -0.73 Total: -34.66 kcal
Atomic # 8 Polarization: -15.38 SS G_CDS: -0.48 Total: -15.86 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -27.31 -6.85 -34.16 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169629894.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.178 kcal
(2) G-P(sol) polarization free energy of solvation -27.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.980 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds