Wall clock time and date at job start Mon Mar 30 2020 02:31:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53002 * 109.47179 * 2 1
4 4 H 1.09004 * 109.47154 * 305.00298 * 3 2 1
5 5 C 1.52998 * 109.47129 * 185.00285 * 3 2 1
6 6 N 1.46896 * 109.46873 * 65.00158 * 3 2 1
7 7 C 1.47489 * 110.99821 * 85.54984 * 6 3 2
8 8 C 1.53519 * 87.93308 * 138.70075 * 7 6 3
9 9 O 1.42897 * 114.34103 * 87.63237 * 8 7 6
10 10 C 1.50698 * 114.16728 * 220.32850 * 8 7 6
11 11 H 1.08001 * 119.99993 * 99.30856 * 10 8 7
12 12 C 1.37878 * 119.99897 * 279.30064 * 10 8 7
13 13 N 1.31514 * 119.99910 * 7.63074 * 12 10 8
14 14 Si 1.86796 * 119.99703 * 187.63713 * 12 10 8
15 15 H 1.48493 * 109.47510 * 94.98751 * 14 12 10
16 16 H 1.48510 * 109.46956 * 214.98536 * 14 12 10
17 17 H 1.48499 * 109.47360 * 334.97924 * 14 12 10
18 18 C 1.47487 * 110.99857 * 181.51527 * 6 3 2
19 19 H 1.08999 * 109.47404 * 180.02562 * 1 2 3
20 20 H 1.08995 * 109.47177 * 59.99680 * 1 2 3
21 21 H 1.09005 * 109.46712 * 300.00030 * 1 2 3
22 22 H 1.08995 * 109.47177 * 120.00320 * 2 1 3
23 23 H 1.09000 * 109.46865 * 240.00409 * 2 1 3
24 24 H 1.08994 * 109.47593 * 191.09655 * 5 3 2
25 25 H 1.09002 * 109.47330 * 311.09496 * 5 3 2
26 26 H 1.09001 * 109.47479 * 71.09458 * 5 3 2
27 27 H 1.08998 * 113.47470 * 253.46363 * 7 6 3
28 28 H 1.08997 * 113.47315 * 23.93620 * 7 6 3
29 29 H 0.96697 * 113.99739 * 80.22109 * 9 8 7
30 30 H 0.96996 * 119.99886 * 179.97438 * 13 12 10
31 31 H 1.09001 * 113.47436 * 336.06657 * 18 6 3
32 32 H 1.09000 * 113.47522 * 106.53118 * 18 6 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 -0.8418
5 6 3.5648 1.4443 -0.1258
6 7 1.6514 2.0992 1.2552
7 6 2.6369 1.8308 2.3192
8 6 2.4962 3.2995 2.7434
9 8 1.4425 3.5445 3.6770
10 6 3.7962 3.9583 3.1266
11 1 4.3123 4.5880 2.4170
12 6 4.3267 3.7572 4.3832
13 7 3.7821 2.8762 5.1937
14 14 5.8190 4.7363 4.9346
15 1 5.3738 5.9280 5.7004
16 1 6.6778 3.8858 5.7975
17 1 6.5919 5.1731 3.7442
18 6 2.0959 3.5054 1.2757
19 1 -0.3634 -1.0276 0.0005
20 1 -0.3633 0.5139 -0.8899
21 1 -0.3633 0.5139 0.8900
22 1 1.8933 -0.5139 0.8899
23 1 1.8933 -0.5138 -0.8900
24 1 3.9445 2.4470 0.0707
25 1 3.9898 0.7470 0.5962
26 1 3.8467 1.1402 -1.1339
27 1 2.2826 1.1259 3.0713
28 1 3.6279 1.5813 1.9403
29 1 1.6696 3.3287 4.5918
30 1 4.1555 2.7345 6.0776
31 1 2.9426 3.7027 0.6182
32 1 1.2832 4.2196 1.1433
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001169629894.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:31:43
Heat of formation + Delta-G solvation = -36.359076 kcal
Electronic energy + Delta-G solvation = -13578.669359 eV
Core-core repulsion = 11346.598743 eV
Total energy + Delta-G solvation = -2232.070617 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 199.131 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.39532 -37.06852 -34.55184 -34.16461 -30.80737 -28.87114 -26.75145 -26.16337
-24.10146 -21.35502 -19.87720 -19.14354 -17.31405 -16.98252 -16.25594 -15.63496
-15.52302 -14.74822 -14.60044 -14.37025 -13.95066 -13.48325 -13.14485 -12.81161
-12.72707 -12.59641 -12.33098 -12.24576 -12.05554 -11.86769 -11.64302 -11.37489
-10.94133 -10.64426 -10.01815 -9.46278 -8.23045 -6.38690 1.41132 1.44255
1.53406 2.38197 2.98125 3.31200 3.82835 3.95508 4.11951 4.31729
4.34986 4.43184 4.50364 4.53944 4.77279 4.80849 4.85371 4.98290
5.09534 5.14442 5.25721 5.27810 5.30654 5.46859 5.55580 5.68469
5.74880 6.03789 6.45114 6.65978 7.33468 7.41476 8.82601
Molecular weight = 199.13amu
Principal moments of inertia in cm(-1)
A = 0.053580 B = 0.010269 C = 0.009686
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.458643 B = 2726.008869 C = 2890.024221
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.104 4.104
3 C 0.036 3.964
4 H 0.083 0.917
5 C -0.179 4.179
6 N -0.470 5.470
7 C -0.011 4.011
8 C 0.217 3.783
9 O -0.579 6.579
10 C -0.558 4.558
11 H 0.063 0.937
12 C 0.029 3.971
13 N -0.914 5.914
14 Si 0.962 3.038
15 H -0.277 1.277
16 H -0.281 1.281
17 H -0.267 1.267
18 C 0.009 3.991
19 H 0.060 0.940
20 H 0.057 0.943
21 H 0.040 0.960
22 H 0.043 0.957
23 H 0.083 0.917
24 H 0.052 0.948
25 H 0.052 0.948
26 H 0.081 0.919
27 H 0.039 0.961
28 H 0.077 0.923
29 H 0.377 0.623
30 H 0.271 0.729
31 H 0.082 0.918
32 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.341 -3.652 -8.422 9.186
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.142 4.142
3 C -0.073 4.073
4 H 0.101 0.899
5 C -0.237 4.237
6 N -0.192 5.192
7 C -0.140 4.140
8 C 0.176 3.824
9 O -0.387 6.387
10 C -0.596 4.596
11 H 0.081 0.919
12 C -0.171 4.171
13 N -0.553 5.553
14 Si 0.787 3.213
15 H -0.202 1.202
16 H -0.206 1.206
17 H -0.192 1.192
18 C -0.119 4.119
19 H 0.079 0.921
20 H 0.076 0.924
21 H 0.059 0.941
22 H 0.062 0.938
23 H 0.102 0.898
24 H 0.071 0.929
25 H 0.071 0.929
26 H 0.099 0.901
27 H 0.058 0.942
28 H 0.095 0.905
29 H 0.227 0.773
30 H 0.080 0.920
31 H 0.100 0.900
32 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -1.368 -3.748 -8.746 9.613
hybrid contribution 1.814 0.385 0.987 2.101
sum 0.446 -3.363 -7.759 8.468
Atomic orbital electron populations
1.21609 0.95197 1.01250 1.01584 1.21428 0.96808 0.94361 1.01568
1.22315 0.94282 0.96941 0.93741 0.89857 1.22417 0.96807 1.01932
1.02542 1.69024 1.41683 1.03493 1.05018 1.24530 0.94770 1.00731
0.93969 1.19752 0.85189 0.91230 0.86226 1.86050 1.41817 1.89313
1.21542 1.21773 1.06777 1.30993 1.00049 0.91892 1.25772 0.99961
0.94935 0.96468 1.69794 1.43221 1.33141 1.09167 0.85493 0.78914
0.78588 0.78311 1.20234 1.20641 1.19176 1.23995 0.98878 0.92147
0.96908 0.92079 0.92364 0.94121 0.93812 0.89847 0.92947 0.92885
0.90053 0.94201 0.90483 0.77335 0.92006 0.89971 0.91689
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.81 9.80 71.98 0.71 -3.11 16
2 C -0.10 -2.97 5.51 30.60 0.17 -2.80 16
3 C 0.04 1.18 2.43 44.92 0.11 1.29 16
4 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16
5 C -0.18 -5.53 7.74 71.98 0.56 -4.97 16
6 N -0.47 -19.57 5.80 -902.65 -5.24 -24.81 16
7 C -0.01 -0.51 6.65 83.58 0.56 0.05 16
8 C 0.22 11.18 1.40 -11.19 -0.02 11.16 16
9 O -0.58 -32.11 13.52 -148.98 -2.01 -34.13 16
10 C -0.56 -30.02 8.65 25.60 0.22 -29.80 16
11 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16
12 C 0.03 1.55 5.33 84.65 0.45 2.00 16
13 N -0.91 -49.79 11.66 21.45 0.25 -49.54 16
14 Si 0.96 41.83 29.54 68.60 2.03 43.86 16
15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16
16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16
17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
18 C 0.01 0.42 6.95 83.58 0.58 1.00 16
19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16
20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
21 H 0.04 1.34 7.75 -2.38 -0.02 1.32 16
22 H 0.04 1.39 8.01 -2.39 -0.02 1.37 16
23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16
24 H 0.05 1.78 5.75 -2.39 -0.01 1.77 16
25 H 0.05 1.74 6.54 -2.39 -0.02 1.73 16
26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16
28 H 0.08 3.56 4.83 -2.39 -0.01 3.55 16
29 H 0.38 21.16 7.12 -74.06 -0.53 20.63 16
30 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16
31 H 0.08 3.35 5.85 -2.39 -0.01 3.34 16
32 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16
Total: -1.00 -57.57 255.28 -1.07 -58.64
By element:
Atomic # 1 Polarization: 30.59 SS G_CDS: 0.57 Total: 31.16 kcal
Atomic # 6 Polarization: -28.52 SS G_CDS: 3.33 Total: -25.19 kcal
Atomic # 7 Polarization: -69.36 SS G_CDS: -4.99 Total: -74.35 kcal
Atomic # 8 Polarization: -32.11 SS G_CDS: -2.01 Total: -34.13 kcal
Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal
Total: -57.57 -1.07 -58.64 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169629894.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.284 kcal
(2) G-P(sol) polarization free energy of solvation -57.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds