Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47179 * 2 1 4 4 H 1.09004 * 109.47154 * 305.00298 * 3 2 1 5 5 C 1.52998 * 109.47129 * 185.00285 * 3 2 1 6 6 N 1.46896 * 109.46873 * 65.00158 * 3 2 1 7 7 C 1.47489 * 110.99821 * 85.54984 * 6 3 2 8 8 C 1.53519 * 87.93308 * 138.70075 * 7 6 3 9 9 O 1.42897 * 114.34103 * 87.63237 * 8 7 6 10 10 C 1.50698 * 114.16728 * 220.32850 * 8 7 6 11 11 H 1.08001 * 119.99993 * 99.30856 * 10 8 7 12 12 C 1.37878 * 119.99897 * 279.30064 * 10 8 7 13 13 N 1.31514 * 119.99910 * 7.63074 * 12 10 8 14 14 Si 1.86796 * 119.99703 * 187.63713 * 12 10 8 15 15 H 1.48493 * 109.47510 * 94.98751 * 14 12 10 16 16 H 1.48510 * 109.46956 * 214.98536 * 14 12 10 17 17 H 1.48499 * 109.47360 * 334.97924 * 14 12 10 18 18 C 1.47487 * 110.99857 * 181.51527 * 6 3 2 19 19 H 1.08999 * 109.47404 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.47177 * 59.99680 * 1 2 3 21 21 H 1.09005 * 109.46712 * 300.00030 * 1 2 3 22 22 H 1.08995 * 109.47177 * 120.00320 * 2 1 3 23 23 H 1.09000 * 109.46865 * 240.00409 * 2 1 3 24 24 H 1.08994 * 109.47593 * 191.09655 * 5 3 2 25 25 H 1.09002 * 109.47330 * 311.09496 * 5 3 2 26 26 H 1.09001 * 109.47479 * 71.09458 * 5 3 2 27 27 H 1.08998 * 113.47470 * 253.46363 * 7 6 3 28 28 H 1.08997 * 113.47315 * 23.93620 * 7 6 3 29 29 H 0.96697 * 113.99739 * 80.22109 * 9 8 7 30 30 H 0.96996 * 119.99886 * 179.97438 * 13 12 10 31 31 H 1.09001 * 113.47436 * 336.06657 * 18 6 3 32 32 H 1.09000 * 113.47522 * 106.53118 * 18 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 1.6514 2.0992 1.2552 7 6 2.6369 1.8308 2.3192 8 6 2.4962 3.2995 2.7434 9 8 1.4425 3.5445 3.6770 10 6 3.7962 3.9583 3.1266 11 1 4.3123 4.5880 2.4170 12 6 4.3267 3.7572 4.3832 13 7 3.7821 2.8762 5.1937 14 14 5.8190 4.7363 4.9346 15 1 5.3738 5.9280 5.7004 16 1 6.6778 3.8858 5.7975 17 1 6.5919 5.1731 3.7442 18 6 2.0959 3.5054 1.2757 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 0.8899 23 1 1.8933 -0.5138 -0.8900 24 1 3.9445 2.4470 0.0707 25 1 3.9898 0.7470 0.5962 26 1 3.8467 1.1402 -1.1339 27 1 2.2826 1.1259 3.0713 28 1 3.6279 1.5813 1.9403 29 1 1.6696 3.3287 4.5918 30 1 4.1555 2.7345 6.0776 31 1 2.9426 3.7027 0.6182 32 1 1.2832 4.2196 1.1433 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169629894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = -36.359076 kcal Electronic energy + Delta-G solvation = -13578.669359 eV Core-core repulsion = 11346.598743 eV Total energy + Delta-G solvation = -2232.070617 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.39532 -37.06852 -34.55184 -34.16461 -30.80737 -28.87114 -26.75145 -26.16337 -24.10146 -21.35502 -19.87720 -19.14354 -17.31405 -16.98252 -16.25594 -15.63496 -15.52302 -14.74822 -14.60044 -14.37025 -13.95066 -13.48325 -13.14485 -12.81161 -12.72707 -12.59641 -12.33098 -12.24576 -12.05554 -11.86769 -11.64302 -11.37489 -10.94133 -10.64426 -10.01815 -9.46278 -8.23045 -6.38690 1.41132 1.44255 1.53406 2.38197 2.98125 3.31200 3.82835 3.95508 4.11951 4.31729 4.34986 4.43184 4.50364 4.53944 4.77279 4.80849 4.85371 4.98290 5.09534 5.14442 5.25721 5.27810 5.30654 5.46859 5.55580 5.68469 5.74880 6.03789 6.45114 6.65978 7.33468 7.41476 8.82601 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053580 B = 0.010269 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.458643 B = 2726.008869 C = 2890.024221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.179 4.179 6 N -0.470 5.470 7 C -0.011 4.011 8 C 0.217 3.783 9 O -0.579 6.579 10 C -0.558 4.558 11 H 0.063 0.937 12 C 0.029 3.971 13 N -0.914 5.914 14 Si 0.962 3.038 15 H -0.277 1.277 16 H -0.281 1.281 17 H -0.267 1.267 18 C 0.009 3.991 19 H 0.060 0.940 20 H 0.057 0.943 21 H 0.040 0.960 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.077 0.923 29 H 0.377 0.623 30 H 0.271 0.729 31 H 0.082 0.918 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -3.652 -8.422 9.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.142 4.142 3 C -0.073 4.073 4 H 0.101 0.899 5 C -0.237 4.237 6 N -0.192 5.192 7 C -0.140 4.140 8 C 0.176 3.824 9 O -0.387 6.387 10 C -0.596 4.596 11 H 0.081 0.919 12 C -0.171 4.171 13 N -0.553 5.553 14 Si 0.787 3.213 15 H -0.202 1.202 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.119 4.119 19 H 0.079 0.921 20 H 0.076 0.924 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.102 0.898 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.227 0.773 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.368 -3.748 -8.746 9.613 hybrid contribution 1.814 0.385 0.987 2.101 sum 0.446 -3.363 -7.759 8.468 Atomic orbital electron populations 1.21609 0.95197 1.01250 1.01584 1.21428 0.96808 0.94361 1.01568 1.22315 0.94282 0.96941 0.93741 0.89857 1.22417 0.96807 1.01932 1.02542 1.69024 1.41683 1.03493 1.05018 1.24530 0.94770 1.00731 0.93969 1.19752 0.85189 0.91230 0.86226 1.86050 1.41817 1.89313 1.21542 1.21773 1.06777 1.30993 1.00049 0.91892 1.25772 0.99961 0.94935 0.96468 1.69794 1.43221 1.33141 1.09167 0.85493 0.78914 0.78588 0.78311 1.20234 1.20641 1.19176 1.23995 0.98878 0.92147 0.96908 0.92079 0.92364 0.94121 0.93812 0.89847 0.92947 0.92885 0.90053 0.94201 0.90483 0.77335 0.92006 0.89971 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.80 71.98 0.71 -3.11 16 2 C -0.10 -2.97 5.51 30.60 0.17 -2.80 16 3 C 0.04 1.18 2.43 44.92 0.11 1.29 16 4 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 5 C -0.18 -5.53 7.74 71.98 0.56 -4.97 16 6 N -0.47 -19.57 5.80 -902.65 -5.24 -24.81 16 7 C -0.01 -0.51 6.65 83.58 0.56 0.05 16 8 C 0.22 11.18 1.40 -11.19 -0.02 11.16 16 9 O -0.58 -32.11 13.52 -148.98 -2.01 -34.13 16 10 C -0.56 -30.02 8.65 25.60 0.22 -29.80 16 11 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 12 C 0.03 1.55 5.33 84.65 0.45 2.00 16 13 N -0.91 -49.79 11.66 21.45 0.25 -49.54 16 14 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 15 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 C 0.01 0.42 6.95 83.58 0.58 1.00 16 19 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.04 1.34 7.75 -2.38 -0.02 1.32 16 22 H 0.04 1.39 8.01 -2.39 -0.02 1.37 16 23 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.05 1.78 5.75 -2.39 -0.01 1.77 16 25 H 0.05 1.74 6.54 -2.39 -0.02 1.73 16 26 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 3.56 4.83 -2.39 -0.01 3.55 16 29 H 0.38 21.16 7.12 -74.06 -0.53 20.63 16 30 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 31 H 0.08 3.35 5.85 -2.39 -0.01 3.34 16 32 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -57.57 255.28 -1.07 -58.64 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.57 Total: 31.16 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 3.33 Total: -25.19 kcal Atomic # 7 Polarization: -69.36 SS G_CDS: -4.99 Total: -74.35 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -2.01 Total: -34.13 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -57.57 -1.07 -58.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169629894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.284 kcal (2) G-P(sol) polarization free energy of solvation -57.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds