Wall clock time and date at job start Mon Mar 30 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 11 11 O 1.42895 * 109.47301 * 299.99654 * 9 7 2 12 12 C 1.53004 * 109.46637 * 179.97438 * 9 7 2 13 13 C 1.53004 * 109.47029 * 185.00010 * 12 9 7 14 14 N 1.46895 * 109.47101 * 180.02562 * 13 12 9 15 15 C 1.48525 * 111.00263 * 52.60552 * 14 13 12 16 16 C 1.54940 * 103.22896 * 159.72070 * 15 14 13 17 17 C 1.54600 * 102.92042 * 322.58402 * 16 15 14 18 18 C 1.47908 * 110.99639 * 170.00059 * 14 13 12 19 19 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 20 20 H 0.96696 * 114.00520 * 300.00121 * 11 9 7 21 21 H 1.09000 * 109.47223 * 304.99790 * 12 9 7 22 22 H 1.08998 * 109.47140 * 65.00108 * 12 9 7 23 23 H 1.09006 * 109.47304 * 300.00174 * 13 12 9 24 24 H 1.08998 * 109.47079 * 60.00061 * 13 12 9 25 25 H 1.09003 * 110.66777 * 278.15214 * 15 14 13 26 26 H 1.08997 * 110.66959 * 41.28377 * 15 14 13 27 27 H 1.09004 * 110.72018 * 204.23115 * 16 15 14 28 28 H 1.08992 * 110.87942 * 81.01530 * 16 15 14 29 29 H 1.09001 * 110.30940 * 263.04480 * 17 16 15 30 30 H 1.08997 * 110.30748 * 140.87552 * 17 16 15 31 31 H 1.08999 * 109.91898 * 333.50704 * 18 14 13 32 32 H 1.09004 * 109.91689 * 94.60870 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 2.2454 -3.6621 0.0005 13 6 1.4845 -4.9836 -0.1252 14 7 2.4391 -6.1001 -0.1246 15 6 3.3492 -6.0217 1.0466 16 6 3.8828 -7.4703 1.1785 17 6 2.6478 -8.3278 0.8184 18 6 1.7378 -7.3968 -0.0042 19 1 -0.4850 0.8401 0.0004 20 1 0.9208 -2.5291 1.9983 21 1 2.9295 -3.5552 -0.8413 22 1 2.8115 -3.6560 0.9319 23 1 0.8003 -5.0905 0.7166 24 1 0.9183 -4.9896 -1.0566 25 1 4.1664 -5.3269 0.8529 26 1 2.7998 -5.7311 1.9420 27 1 4.2068 -7.6705 2.1999 28 1 4.6957 -7.6504 0.4752 29 1 2.1361 -8.6533 1.7241 30 1 2.9465 -9.1893 0.2212 31 1 0.7866 -7.2583 0.5096 32 1 1.5668 -7.8197 -0.9942 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535750755.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:22 Heat of formation + Delta-G solvation = -83.614146 kcal Electronic energy + Delta-G solvation = -12972.696568 eV Core-core repulsion = 10738.576818 eV Total energy + Delta-G solvation = -2234.119750 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95739 -37.87973 -34.32132 -33.98759 -30.90968 -29.73493 -27.86661 -24.69173 -22.74485 -21.66975 -21.13560 -18.95494 -17.06853 -16.84046 -16.66631 -16.19956 -15.94144 -15.03407 -14.60745 -14.44521 -13.88160 -13.51246 -13.14460 -12.89092 -12.84758 -12.62393 -12.24903 -12.17400 -12.02909 -11.82308 -11.68543 -11.38212 -11.02994 -10.71460 -10.13719 -9.36437 -8.14573 -6.40384 1.39346 1.40327 1.53084 2.38586 3.09249 3.11155 3.75454 3.82093 4.09214 4.20357 4.22230 4.37822 4.46585 4.62762 4.64268 4.73226 4.90221 4.93174 4.99831 5.03351 5.08118 5.21125 5.32450 5.36495 5.62801 5.77221 6.00907 6.04575 6.14203 6.71945 7.31903 7.52846 8.90379 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.072075 B = 0.007160 C = 0.006807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 388.390584 B = 3909.503353 C = 4112.231742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.962 3.038 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.585 4.585 8 H 0.059 0.941 9 C 0.225 3.775 10 H 0.019 0.981 11 O -0.581 6.581 12 C -0.118 4.118 13 C 0.063 3.937 14 N -0.531 5.531 15 C 0.029 3.971 16 C -0.118 4.118 17 C -0.124 4.124 18 C 0.027 3.973 19 H 0.261 0.739 20 H 0.355 0.645 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 -13.188 2.798 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.787 3.213 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.623 4.623 8 H 0.077 0.923 9 C 0.168 3.832 10 H 0.037 0.963 11 O -0.385 6.385 12 C -0.157 4.157 13 C -0.065 4.065 14 N -0.256 5.256 15 C -0.099 4.099 16 C -0.156 4.156 17 C -0.162 4.162 18 C -0.101 4.101 19 H 0.070 0.930 20 H 0.200 0.800 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.077 0.923 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.206 -13.110 1.832 14.620 hybrid contribution -0.061 1.203 0.892 1.499 sum 6.145 -11.907 2.724 13.674 Atomic orbital electron populations 1.70227 1.07735 1.27345 1.48711 1.25963 0.95531 1.03103 0.93380 0.85473 0.79108 0.78989 0.77778 1.18718 1.20423 1.20329 1.22111 0.93520 0.92772 1.53864 0.92297 1.19258 0.88007 0.91352 0.84622 0.96295 1.86484 1.39398 1.96487 1.16117 1.22092 0.98467 0.93816 1.01288 1.22090 0.93749 0.90730 0.99900 1.64824 1.17874 1.01973 1.40910 1.23279 0.96314 0.98863 0.91432 1.22490 0.97902 0.92598 1.02580 1.22392 0.95672 0.98157 0.99977 1.22990 0.96319 0.89975 1.00838 0.92963 0.80003 0.92426 0.92231 0.95352 0.92345 0.90663 0.94404 0.89440 0.90454 0.90621 0.89507 0.94511 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.04 12.84 21.45 0.28 -54.77 16 2 C 0.02 1.26 5.40 84.66 0.46 1.72 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.58 -32.91 8.76 25.60 0.22 -32.68 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.23 11.87 2.82 29.85 0.08 11.96 16 10 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 11 O -0.58 -30.75 12.27 -148.98 -1.83 -32.58 16 12 C -0.12 -5.00 4.49 30.60 0.14 -4.86 16 13 C 0.06 2.38 4.92 86.31 0.42 2.80 16 14 N -0.53 -16.72 5.40 -883.01 -4.76 -21.48 16 15 C 0.03 0.79 5.10 86.65 0.44 1.23 16 16 C -0.12 -2.38 7.06 31.80 0.22 -2.16 16 17 C -0.12 -2.39 6.93 31.48 0.22 -2.17 16 18 C 0.03 0.68 6.69 86.45 0.58 1.26 16 19 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 20 H 0.36 16.55 9.04 -74.06 -0.67 15.88 16 21 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 22 H 0.06 2.38 6.79 -2.39 -0.02 2.36 16 23 H 0.03 1.11 7.49 -2.38 -0.02 1.09 16 24 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 2.15 7.66 -2.39 -0.02 2.13 16 26 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 27 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 0.98 7.57 -2.39 -0.02 0.96 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -64.72 261.29 -1.09 -65.81 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.41 Total: 19.94 kcal Atomic # 6 Polarization: -25.69 SS G_CDS: 2.79 Total: -22.90 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -4.49 Total: -76.25 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -1.83 Total: -32.58 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -64.72 -1.09 -65.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535750755.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.806 kcal (2) G-P(sol) polarization free energy of solvation -64.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds