Wall clock time and date at job start Mon Mar 30 2020 02:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52963 * 1 3 3 H 1.10916 * 106.89799 * 2 1 4 4 C 1.51959 * 111.18261 * 117.24222 * 2 1 3 5 5 C 1.52238 * 114.24522 * 86.77634 * 4 2 1 6 6 C 1.53171 * 110.67284 * 276.58855 * 5 4 2 7 7 C 1.54282 * 108.20423 * 158.88006 * 5 4 2 8 8 N 1.46279 * 112.00425 * 39.97263 * 5 4 2 9 9 C 1.46445 * 112.87247 * 308.99237 * 8 5 4 10 10 H 1.08801 * 110.53568 * 297.86350 * 9 8 5 11 11 C 1.51168 * 109.06591 * 178.57922 * 9 8 5 12 12 H 1.08002 * 119.99499 * 0.02562 * 11 9 8 13 13 C 1.37871 * 120.00016 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00481 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99886 * 179.72981 * 13 11 9 16 16 H 1.48502 * 109.46964 * 270.27509 * 15 13 11 17 17 H 1.48505 * 109.47036 * 30.26897 * 15 13 11 18 18 H 1.48490 * 109.47395 * 150.27411 * 15 13 11 19 19 O 1.41962 * 110.74869 * 243.44097 * 2 1 3 20 20 H 1.08998 * 109.46742 * 302.75818 * 1 2 3 21 21 H 1.09000 * 109.47103 * 62.75507 * 1 2 3 22 22 H 1.08991 * 109.47355 * 182.75708 * 1 2 3 23 23 H 1.09997 * 109.06114 * 324.70735 * 4 2 1 24 24 H 1.10033 * 108.94589 * 208.62665 * 4 2 1 25 25 H 1.08994 * 109.47455 * 184.42493 * 6 5 4 26 26 H 1.09000 * 109.47267 * 304.42775 * 6 5 4 27 27 H 1.08998 * 109.46739 * 64.42138 * 6 5 4 28 28 H 1.09003 * 109.47486 * 298.57495 * 7 5 4 29 29 H 1.09004 * 109.47124 * 58.57803 * 7 5 4 30 30 H 1.09005 * 109.47283 * 178.57352 * 7 5 4 31 31 H 1.00904 * 111.55894 * 182.71640 * 8 5 4 32 32 H 0.97005 * 119.99656 * 359.72741 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5296 0.0000 0.0000 3 1 1.8520 1.0613 0.0000 4 6 2.0787 -0.6486 1.2597 5 6 2.2318 -2.1605 1.1687 6 6 0.9032 -2.8580 1.4757 7 6 3.2518 -2.6069 2.2367 8 7 2.7333 -2.5828 -0.1390 9 6 1.9692 -2.0153 -1.2520 10 1 0.9349 -2.3510 -1.2153 11 6 2.5791 -2.4771 -2.5558 12 1 3.4434 -3.1246 -2.5482 13 6 2.0319 -2.0716 -3.7546 14 7 0.9791 -1.2835 -3.7639 15 14 2.7902 -2.6361 -5.3658 16 1 3.8306 -1.6652 -5.7902 17 1 3.4078 -3.9738 -5.1804 18 1 1.7352 -2.7180 -6.4075 19 8 2.0326 -0.5936 -1.1875 20 1 -0.3633 0.5561 0.8642 21 1 -0.3633 0.4705 -0.9137 22 1 -0.3633 -1.0264 0.0494 23 1 1.4173 -0.4082 2.1051 24 1 3.0596 -0.2067 1.4907 25 1 1.0526 -3.9377 1.4824 26 1 0.5404 -2.5354 2.4516 27 1 0.1709 -2.5973 0.7115 28 1 4.2165 -2.1412 2.0350 29 1 2.9011 -2.3036 3.2232 30 1 3.3585 -3.6913 2.2066 31 1 2.7904 -3.5879 -0.2072 32 1 0.5851 -0.9907 -2.9272 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034519001.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:41 Heat of formation + Delta-G solvation = -57.674289 kcal Electronic energy + Delta-G solvation = -13901.342886 eV Core-core repulsion = 11668.347973 eV Total energy + Delta-G solvation = -2232.994914 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.05573 -35.07171 -33.36819 -31.38970 -29.28547 -27.12727 -26.26277 -25.36161 -22.29138 -20.75687 -17.93186 -17.22965 -15.59645 -15.06001 -14.72156 -14.33750 -13.68244 -13.36899 -13.09218 -12.72186 -12.18043 -11.96596 -11.86536 -11.51904 -11.33383 -11.07383 -10.83069 -10.71469 -10.53434 -10.31745 -10.07104 -9.51573 -8.76177 -8.62382 -8.44252 -7.25352 -6.35333 -4.12671 3.46605 3.50363 3.65581 4.50605 4.85323 5.04248 5.18509 5.22318 5.48444 5.52220 5.65283 5.73247 5.85509 5.93168 6.00821 6.07869 6.11920 6.19545 6.22183 6.39104 6.44667 6.56699 6.67776 6.85967 6.87671 7.59924 8.09347 8.46862 8.57873 8.87515 8.96066 9.69354 11.05408 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044656 B = 0.012365 C = 0.010764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.863269 B = 2263.858279 C = 2600.749493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.082 3.918 3 H 0.070 0.930 4 C -0.125 4.125 5 C 0.114 3.886 6 C -0.180 4.180 7 C -0.136 4.136 8 N -0.698 5.698 9 C 0.372 3.628 10 H -0.013 1.013 11 C -0.594 4.594 12 H 0.063 0.937 13 C 0.031 3.969 14 N -0.892 5.892 15 Si 1.076 2.924 16 H -0.286 1.286 17 H -0.288 1.288 18 H -0.285 1.285 19 O -0.359 6.359 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.346 0.654 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -1.072 9.472 9.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 H 0.088 0.912 4 C -0.163 4.163 5 C 0.022 3.978 6 C -0.239 4.239 7 C -0.193 4.193 8 N -0.337 5.337 9 C 0.229 3.771 10 H 0.004 0.996 11 C -0.632 4.632 12 H 0.081 0.919 13 C -0.177 4.177 14 N -0.527 5.527 15 Si 0.904 3.096 16 H -0.213 1.213 17 H -0.214 1.214 18 H -0.210 1.210 19 O -0.276 6.276 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.166 0.834 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.392 -0.321 7.652 7.669 hybrid contribution -0.773 -0.680 2.158 2.391 sum -0.381 -1.001 9.810 9.868 Atomic orbital electron populations 1.22455 0.97811 1.01738 1.01434 1.21649 0.92184 0.96737 0.87182 0.91216 1.21949 1.01421 0.94733 0.98218 1.20675 0.92103 0.94002 0.91009 1.22714 0.99538 1.00413 1.01268 1.22162 0.99404 1.00733 0.97038 1.59535 1.57943 1.15217 1.00962 1.20149 0.90414 0.77473 0.89057 0.99633 1.21987 1.18137 1.33158 0.89927 0.91927 1.25885 0.95232 0.94066 1.02541 1.70635 1.19999 1.30109 1.31969 0.83457 0.75619 0.75789 0.74706 1.21286 1.21396 1.21044 1.88148 1.82009 1.23127 1.34290 0.93060 0.91920 0.92894 0.92288 0.91878 0.92967 0.92938 0.92406 0.92194 0.93294 0.93165 0.83390 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 9.22 37.14 0.34 -2.98 16 2 C 0.08 1.70 3.39 -27.28 -0.09 1.61 16 3 H 0.07 1.37 8.29 -50.83 -0.42 0.95 16 4 C -0.13 -2.25 4.52 -27.65 -0.13 -2.37 16 5 C 0.11 2.06 0.89 -131.57 -0.12 1.95 16 6 C -0.18 -2.97 8.24 37.25 0.31 -2.66 16 7 C -0.14 -2.05 8.46 37.83 0.32 -1.73 16 8 N -0.70 -15.47 5.79 -99.54 -0.58 -16.05 16 9 C 0.37 9.76 2.22 -4.99 -0.01 9.75 16 10 H -0.01 -0.36 6.32 -52.04 -0.33 -0.69 16 11 C -0.59 -17.23 8.97 -34.21 -0.31 -17.53 16 12 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 13 C 0.03 0.90 5.40 -17.82 -0.10 0.81 16 14 N -0.89 -27.46 13.53 55.43 0.75 -26.71 16 15 Si 1.08 25.54 29.90 -169.99 -5.08 20.46 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 O -0.36 -9.55 8.85 -35.23 -0.31 -9.87 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 22 H 0.05 1.02 5.27 -51.93 -0.27 0.75 16 23 H 0.06 0.90 7.79 -51.36 -0.40 0.50 16 24 H 0.06 1.11 7.90 -51.34 -0.41 0.71 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.06 1.06 4.84 -51.93 -0.25 0.81 16 28 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.35 7.30 8.70 -39.29 -0.34 6.95 16 32 H 0.28 8.62 6.49 -40.82 -0.27 8.35 16 LS Contribution 250.98 15.07 3.78 3.78 Total: -1.00 -31.39 250.98 -6.06 -37.45 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.85 Total: 4.09 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 0.22 Total: -13.16 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.17 Total: -42.76 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.31 Total: -9.87 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.39 -6.06 -37.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034519001.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.222 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds