Wall clock time and date at job start Mon Mar 30 2020 01:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47074 * 2 1 4 4 N 1.46501 * 109.47209 * 119.99679 * 2 1 3 5 5 C 1.36938 * 119.99571 * 117.49382 * 4 2 1 6 6 H 1.08002 * 119.99491 * 146.19473 * 5 4 2 7 7 C 1.38806 * 120.00474 * 326.19480 * 5 4 2 8 8 N 1.31623 * 119.99887 * 344.99249 * 7 5 4 9 9 Si 1.86795 * 120.00318 * 164.99378 * 7 5 4 10 10 H 1.48495 * 109.47360 * 89.99765 * 9 7 5 11 11 H 1.48498 * 109.47345 * 210.00061 * 9 7 5 12 12 H 1.48507 * 109.46920 * 329.99801 * 9 7 5 13 13 C 1.46497 * 120.00169 * 297.49709 * 4 2 1 14 14 H 1.09011 * 110.80464 * 3.62673 * 13 4 2 15 15 C 1.54806 * 110.90962 * 239.99999 * 13 4 2 16 16 C 1.54097 * 104.18690 * 262.68181 * 15 13 4 17 17 O 1.43748 * 107.29508 * 2.02798 * 16 15 13 18 18 C 1.44382 * 106.97236 * 333.48608 * 17 16 15 19 19 H 1.09008 * 109.47387 * 300.00374 * 1 2 3 20 20 H 1.08998 * 109.47213 * 60.00009 * 1 2 3 21 21 H 1.08995 * 109.47161 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46989 * 239.99947 * 2 1 3 23 23 H 1.08997 * 109.46862 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46543 * 299.99653 * 3 2 1 25 25 H 1.08997 * 109.47256 * 60.00110 * 3 2 1 26 26 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 27 27 H 1.09001 * 110.49039 * 144.00721 * 15 13 4 28 28 H 1.09003 * 110.48653 * 21.35524 * 15 13 4 29 29 H 1.09003 * 109.88283 * 121.45459 * 16 15 13 30 30 H 1.09005 * 109.88015 * 242.60168 * 16 15 13 31 31 H 1.08996 * 110.61857 * 281.55653 * 18 17 16 32 32 H 1.08998 * 110.61255 * 158.56291 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.7627 -1.8331 1.0712 6 1 3.5467 -2.0473 1.7825 7 6 2.5097 -2.7160 0.0304 8 7 1.3893 -2.6227 -0.6540 9 14 3.7592 -4.0364 -0.3990 10 1 3.4699 -5.2649 0.3834 11 1 3.6772 -4.3427 -1.8497 12 1 5.1242 -3.5513 -0.0720 13 6 1.7103 -0.1588 2.5261 14 1 1.0600 0.7131 2.4533 15 6 3.0075 0.1825 3.2987 16 6 3.2504 -1.0495 4.1919 17 8 2.2132 -2.0007 3.8991 18 6 1.0747 -1.2502 3.4246 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6767 1.9564 0.8900 26 1 1.2123 -3.2399 -1.3811 27 1 2.8646 1.0741 3.9093 28 1 3.8382 0.3219 2.6068 29 1 4.2251 -1.4832 3.9681 30 1 3.2032 -0.7611 5.2421 31 1 0.5392 -0.7969 4.2587 32 1 0.4104 -1.8883 2.8419 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:36 Heat of formation + Delta-G solvation = -27.722196 kcal Electronic energy + Delta-G solvation = -13990.626960 eV Core-core repulsion = 11758.930867 eV Total energy + Delta-G solvation = -2231.696093 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.66844 -35.70814 -31.76971 -31.21838 -28.96832 -27.46991 -25.97429 -23.64701 -21.70823 -20.56430 -18.98580 -16.56990 -15.59084 -15.08264 -14.44530 -14.00528 -13.70888 -13.23983 -12.89298 -12.31652 -12.01617 -11.49810 -11.25642 -10.92510 -10.83564 -10.73151 -10.59217 -10.53513 -10.35288 -10.00780 -9.86420 -9.57357 -9.26562 -8.74108 -8.32107 -6.50823 -5.70046 -3.17371 3.44992 3.51377 3.53436 4.57621 4.86774 5.31957 5.42028 5.65060 5.73780 5.87311 6.07145 6.16335 6.23997 6.37264 6.42376 6.48062 6.53168 6.61088 6.66979 6.76661 6.78025 6.97017 7.00668 7.13497 7.68034 7.79782 7.81062 8.02165 8.62091 9.35362 9.93886 10.48829 11.37937 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.018811 C = 0.013412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.519320 B = 1488.164488 C = 2087.195288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.183 3.817 3 C -0.163 4.163 4 N -0.569 5.569 5 C -0.237 4.237 6 H 0.068 0.932 7 C 0.006 3.994 8 N -0.901 5.901 9 Si 0.899 3.101 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.281 1.281 13 C 0.145 3.855 14 H 0.066 0.934 15 C -0.170 4.170 16 C 0.057 3.943 17 O -0.366 6.366 18 C 0.041 3.959 19 H 0.021 0.979 20 H 0.026 0.974 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.251 0.749 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.399 6.003 4.455 7.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.077 3.923 3 C -0.222 4.222 4 N -0.289 5.289 5 C -0.367 4.367 6 H 0.085 0.915 7 C -0.192 4.192 8 N -0.545 5.545 9 Si 0.729 3.271 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.207 1.207 13 C 0.036 3.964 14 H 0.084 0.916 15 C -0.210 4.210 16 C -0.021 4.021 17 O -0.284 6.284 18 C -0.037 4.037 19 H 0.040 0.960 20 H 0.045 0.955 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.363 5.664 4.306 7.124 hybrid contribution 0.558 -0.493 -0.226 0.778 sum 0.921 5.170 4.080 6.650 Atomic orbital electron populations 1.22156 0.98738 1.02339 0.97225 1.20250 0.91636 0.88581 0.91879 1.22410 1.00636 0.99922 0.99213 1.43970 1.60446 1.26645 0.97818 1.19092 1.09612 0.96656 1.11365 0.91465 1.25115 0.96134 0.97128 1.00823 1.69995 1.22399 1.38591 1.23499 0.86362 0.81436 0.82277 0.77048 1.21461 1.21891 1.20680 1.21773 0.92508 0.94620 0.87545 0.91602 1.23426 1.01893 0.96699 0.98959 1.22890 0.92675 0.90243 0.96269 1.88867 1.23507 1.30364 1.85677 1.23958 0.89358 0.95309 0.95120 0.96025 0.95450 0.90531 0.88875 0.93636 0.94292 0.94491 0.93935 0.92634 0.90417 0.91182 0.94596 0.94788 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.05 37.16 0.34 -2.80 16 2 C 0.18 4.17 2.32 -67.93 -0.16 4.02 16 3 C -0.16 -3.12 9.15 37.16 0.34 -2.78 16 4 N -0.57 -13.61 2.37 -155.89 -0.37 -13.98 16 5 C -0.24 -6.36 7.88 -15.06 -0.12 -6.48 16 6 H 0.07 1.85 6.40 -52.49 -0.34 1.51 16 7 C 0.01 0.17 4.90 -17.43 -0.09 0.09 16 8 N -0.90 -25.36 10.27 55.49 0.57 -24.79 16 9 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.14 2.98 2.82 -65.93 -0.19 2.80 16 14 H 0.07 1.26 6.23 -51.92 -0.32 0.94 16 15 C -0.17 -3.11 6.26 -25.21 -0.16 -3.26 16 16 C 0.06 1.05 6.79 37.73 0.26 1.31 16 17 O -0.37 -8.15 10.35 -35.23 -0.36 -8.51 16 18 C 0.04 0.85 6.98 38.21 0.27 1.12 16 19 H 0.02 0.42 7.15 -51.92 -0.37 0.05 16 20 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.08 1.88 7.12 -51.93 -0.37 1.51 16 22 H 0.09 2.44 6.13 -51.93 -0.32 2.12 16 23 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.04 0.66 7.02 -51.93 -0.36 0.29 16 26 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.52 8.04 -51.93 -0.42 1.10 16 29 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 251.54 15.07 3.79 3.79 Total: -1.00 -28.23 251.54 -5.92 -34.16 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -5.02 Total: -1.77 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 0.49 Total: -5.99 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.20 Total: -38.77 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.36 Total: -8.51 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.23 -5.92 -34.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.436 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds