Wall clock time and date at job start Mon Mar 30 2020 01:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47074 * 2 1 4 4 N 1.46501 * 109.47209 * 119.99679 * 2 1 3 5 5 C 1.36938 * 119.99571 * 117.49382 * 4 2 1 6 6 H 1.08002 * 119.99491 * 146.19473 * 5 4 2 7 7 C 1.38806 * 120.00474 * 326.19480 * 5 4 2 8 8 N 1.31623 * 119.99887 * 344.99249 * 7 5 4 9 9 Si 1.86795 * 120.00318 * 164.99378 * 7 5 4 10 10 H 1.48495 * 109.47360 * 89.99765 * 9 7 5 11 11 H 1.48498 * 109.47345 * 210.00061 * 9 7 5 12 12 H 1.48507 * 109.46920 * 329.99801 * 9 7 5 13 13 C 1.46497 * 120.00169 * 297.49709 * 4 2 1 14 14 H 1.09011 * 110.80464 * 3.62673 * 13 4 2 15 15 C 1.54806 * 110.90962 * 239.99999 * 13 4 2 16 16 C 1.54097 * 104.18690 * 262.68181 * 15 13 4 17 17 O 1.43748 * 107.29508 * 2.02798 * 16 15 13 18 18 C 1.44382 * 106.97236 * 333.48608 * 17 16 15 19 19 H 1.09008 * 109.47387 * 300.00374 * 1 2 3 20 20 H 1.08998 * 109.47213 * 60.00009 * 1 2 3 21 21 H 1.08995 * 109.47161 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46989 * 239.99947 * 2 1 3 23 23 H 1.08997 * 109.46862 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.46543 * 299.99653 * 3 2 1 25 25 H 1.08997 * 109.47256 * 60.00110 * 3 2 1 26 26 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 27 27 H 1.09001 * 110.49039 * 144.00721 * 15 13 4 28 28 H 1.09003 * 110.48653 * 21.35524 * 15 13 4 29 29 H 1.09003 * 109.88283 * 121.45459 * 16 15 13 30 30 H 1.09005 * 109.88015 * 242.60168 * 16 15 13 31 31 H 1.08996 * 110.61857 * 281.55653 * 18 17 16 32 32 H 1.08998 * 110.61255 * 158.56291 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.7627 -1.8331 1.0712 6 1 3.5467 -2.0473 1.7825 7 6 2.5097 -2.7160 0.0304 8 7 1.3893 -2.6227 -0.6540 9 14 3.7592 -4.0364 -0.3990 10 1 3.4699 -5.2649 0.3834 11 1 3.6772 -4.3427 -1.8497 12 1 5.1242 -3.5513 -0.0720 13 6 1.7103 -0.1588 2.5261 14 1 1.0600 0.7131 2.4533 15 6 3.0075 0.1825 3.2987 16 6 3.2504 -1.0495 4.1919 17 8 2.2132 -2.0007 3.8991 18 6 1.0747 -1.2502 3.4246 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 3.1299 1.4425 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6767 1.9564 0.8900 26 1 1.2123 -3.2399 -1.3811 27 1 2.8646 1.0741 3.9093 28 1 3.8382 0.3219 2.6068 29 1 4.2251 -1.4832 3.9681 30 1 3.2032 -0.7611 5.2421 31 1 0.5392 -0.7969 4.2587 32 1 0.4104 -1.8883 2.8419 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:36 Heat of formation + Delta-G solvation = -45.129179 kcal Electronic energy + Delta-G solvation = -13991.381783 eV Core-core repulsion = 11758.930867 eV Total energy + Delta-G solvation = -2232.450917 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29937 -37.47414 -33.75226 -32.87490 -30.62134 -29.20681 -27.60529 -25.60426 -23.27897 -22.17965 -20.80815 -18.39173 -17.25877 -16.79778 -16.35734 -15.70796 -15.43165 -14.95660 -14.53597 -14.06271 -13.67851 -13.26414 -12.86165 -12.76626 -12.71854 -12.38344 -12.32542 -12.18676 -12.06266 -11.79036 -11.58824 -11.33306 -11.05315 -10.40239 -10.28552 -8.42707 -7.75442 -5.23003 1.45781 1.48390 1.55131 2.57438 3.32075 3.39213 3.61756 4.06883 4.31776 4.36285 4.48507 4.59065 4.68088 4.79640 4.93217 4.95709 5.00227 5.01696 5.06026 5.09928 5.20434 5.29355 5.45018 5.49118 5.82866 5.85105 6.08169 6.26591 6.59943 7.34001 8.02348 8.49521 9.29072 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.026446 B = 0.018811 C = 0.013412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.519320 B = 1488.164488 C = 2087.195288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.177 3.823 3 C -0.148 4.148 4 N -0.583 5.583 5 C -0.229 4.229 6 H 0.057 0.943 7 C -0.045 4.045 8 N -0.921 5.921 9 Si 0.947 3.053 10 H -0.295 1.295 11 H -0.295 1.295 12 H -0.276 1.276 13 C 0.137 3.863 14 H 0.087 0.913 15 C -0.159 4.159 16 C 0.051 3.949 17 O -0.399 6.399 18 C 0.043 3.957 19 H 0.040 0.960 20 H 0.043 0.957 21 H 0.038 0.962 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.243 0.757 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 7.813 5.704 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.071 3.929 3 C -0.207 4.207 4 N -0.303 5.303 5 C -0.360 4.360 6 H 0.075 0.925 7 C -0.241 4.241 8 N -0.567 5.567 9 Si 0.778 3.222 10 H -0.223 1.223 11 H -0.221 1.221 12 H -0.201 1.201 13 C 0.029 3.971 14 H 0.105 0.895 15 C -0.198 4.198 16 C -0.025 4.025 17 O -0.319 6.319 18 C -0.035 4.035 19 H 0.059 0.941 20 H 0.062 0.938 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.622 7.496 5.573 9.362 hybrid contribution 0.478 -1.020 -0.549 1.253 sum 1.100 6.476 5.024 8.270 Atomic orbital electron populations 1.21973 0.97914 1.00407 0.98906 1.20230 0.92286 0.90249 0.90125 1.22204 1.00125 0.97320 1.01060 1.44126 1.60451 1.26145 0.99602 1.19150 1.09247 0.97201 1.10427 0.92497 1.25673 0.97575 0.99122 1.01684 1.70132 1.23507 1.39226 1.23884 0.85587 0.80120 0.80175 0.76366 1.22250 1.22106 1.20099 1.22006 0.94166 0.94975 0.85963 0.89526 1.23338 0.99744 0.98058 0.98684 1.23085 0.91431 0.89710 0.98285 1.88827 1.24701 1.32356 1.85988 1.23914 0.88899 0.94577 0.96087 0.94128 0.93776 0.94280 0.92922 0.94273 0.92378 0.92611 0.94758 0.88740 0.91937 0.91871 0.91173 0.91084 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 9.05 71.98 0.65 -4.95 16 2 C 0.18 7.96 2.32 44.99 0.10 8.06 16 3 C -0.15 -5.30 9.15 71.98 0.66 -4.64 16 4 N -0.58 -27.49 2.37 -647.11 -1.54 -29.03 16 5 C -0.23 -12.36 7.88 84.03 0.66 -11.70 16 6 H 0.06 3.15 6.40 -2.91 -0.02 3.13 16 7 C -0.05 -2.53 4.90 84.86 0.42 -2.11 16 8 N -0.92 -53.37 10.27 21.65 0.22 -53.15 16 9 Si 0.95 46.41 29.58 68.60 2.03 48.44 16 10 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 11 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.14 5.31 2.82 46.29 0.13 5.44 16 14 H 0.09 2.98 6.23 -2.38 -0.01 2.97 16 15 C -0.16 -5.27 6.26 31.58 0.20 -5.08 16 16 C 0.05 1.78 6.79 72.35 0.49 2.27 16 17 O -0.40 -17.30 10.35 -148.98 -1.54 -18.84 16 18 C 0.04 1.74 6.98 72.66 0.51 2.24 16 19 H 0.04 1.51 7.15 -2.38 -0.02 1.49 16 20 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.04 1.93 7.12 -2.39 -0.02 1.91 16 22 H 0.05 2.80 6.13 -2.39 -0.01 2.79 16 23 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.05 1.77 7.02 -2.39 -0.02 1.75 16 26 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16 29 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -61.35 251.54 4.07 -57.28 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.08 Total: 5.76 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 3.82 Total: -10.46 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -1.31 Total: -82.18 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -1.54 Total: -18.84 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -61.35 4.07 -57.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.151 kcal (2) G-P(sol) polarization free energy of solvation -61.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds