Wall clock time and date at job start Mon Mar 30 2020 02:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46897 * 109.47364 * 239.99717 * 2 1 3 13 13 C 1.46905 * 110.99904 * 85.00210 * 12 2 1 14 14 H 1.09002 * 110.43494 * 32.45330 * 13 12 2 15 15 C 1.54815 * 110.48669 * 269.76851 * 13 12 2 16 16 C 1.54991 * 102.09084 * 220.44465 * 15 13 12 17 17 O 1.44381 * 103.49466 * 37.01951 * 16 15 13 18 18 C 1.43739 * 106.97305 * 319.94297 * 17 16 15 19 19 H 1.09000 * 109.87965 * 267.08349 * 18 17 16 20 20 C 1.53001 * 109.87892 * 145.93450 * 18 17 16 21 21 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 23 23 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 24 24 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 25 25 H 1.00898 * 110.99590 * 321.04942 * 12 2 1 26 26 H 1.09002 * 110.90677 * 338.64204 * 15 13 12 27 27 H 1.09002 * 110.90871 * 102.24184 * 15 13 12 28 28 H 1.08999 * 110.61953 * 278.52123 * 16 15 13 29 29 H 1.08997 * 110.75647 * 155.59136 * 16 15 13 30 30 H 1.09005 * 109.47108 * 302.16596 * 20 18 17 31 31 H 1.09000 * 109.47167 * 62.16379 * 20 18 17 32 32 H 1.09005 * 109.47447 * 182.16593 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 2.0826 0.2226 -2.3469 14 1 2.3200 1.2333 -2.0150 15 6 0.7457 0.2055 -3.1274 16 6 1.2288 0.2430 -4.5996 17 8 2.4182 -0.5753 -4.5849 18 6 3.1242 -0.2676 -3.3712 19 1 3.8579 0.5166 -3.5579 20 6 3.8226 -1.5223 -2.8432 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.9031 -0.5278 4.4376 25 1 1.4496 -1.4979 -1.4099 26 1 0.1882 -0.7089 -2.9241 27 1 0.1465 1.0851 -2.8920 28 1 1.4686 1.2633 -4.8990 29 1 0.4773 -0.1839 -5.2637 30 1 3.0841 -2.3068 -2.6777 31 1 4.5576 -1.8631 -3.5724 32 1 4.3238 -1.2909 -1.9032 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133464525.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:37 Heat of formation + Delta-G solvation = -60.878697 kcal Electronic energy + Delta-G solvation = -13445.410791 eV Core-core repulsion = 11212.276924 eV Total energy + Delta-G solvation = -2233.133867 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.71793 -37.53213 -34.61691 -32.69693 -32.14292 -29.36395 -27.11347 -26.11885 -23.10883 -22.28165 -21.16537 -18.78891 -17.67948 -16.75902 -16.59029 -16.38285 -15.38600 -15.13751 -14.48252 -14.38659 -14.13136 -13.78682 -13.37766 -13.10643 -12.92619 -12.80716 -12.34723 -12.04988 -11.98178 -11.79528 -11.68998 -11.43980 -11.06029 -10.73908 -10.58341 -9.00962 -8.25813 -6.28034 1.30049 1.35473 1.45677 2.32858 3.00995 3.08576 3.34112 3.78144 3.96086 4.18414 4.19494 4.36644 4.48525 4.57038 4.61807 4.70218 4.72540 4.83403 4.91740 4.96972 5.07924 5.09774 5.21268 5.39817 5.56679 5.68443 6.04069 6.05022 6.69809 6.71738 6.80171 7.37003 8.91643 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053555 B = 0.010148 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.703176 B = 2758.412607 C = 3105.945471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.188 3.812 3 H 0.029 0.971 4 C -0.502 4.502 5 H 0.035 0.965 6 C 0.006 3.994 7 N -0.952 5.952 8 Si 0.954 3.046 9 H -0.269 1.269 10 H -0.301 1.301 11 H -0.248 1.248 12 N -0.666 5.666 13 C 0.053 3.947 14 H 0.083 0.917 15 C -0.179 4.179 16 C 0.048 3.952 17 O -0.396 6.396 18 C 0.080 3.920 19 H 0.073 0.927 20 C -0.121 4.121 21 H 0.052 0.948 22 H 0.033 0.967 23 H 0.065 0.935 24 H 0.264 0.736 25 H 0.338 0.662 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 5.008 -14.723 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.079 3.921 3 H 0.047 0.953 4 C -0.541 4.541 5 H 0.054 0.946 6 C -0.190 4.190 7 N -0.594 5.594 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.229 1.229 11 H -0.172 1.172 12 N -0.295 5.295 13 C -0.058 4.058 14 H 0.101 0.899 15 C -0.218 4.218 16 C -0.028 4.028 17 O -0.316 6.316 18 C 0.022 3.978 19 H 0.091 0.909 20 C -0.178 4.178 21 H 0.071 0.929 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.157 0.843 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.124 0.876 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.141 4.925 -14.532 15.662 hybrid contribution -1.293 0.572 0.777 1.614 sum -4.434 5.497 -13.755 15.462 Atomic orbital electron populations 1.22802 0.99437 1.01311 1.00112 1.19471 0.90045 0.93971 0.88629 0.95308 1.21293 1.30091 1.12478 0.90200 0.94628 1.25828 0.97651 1.00100 0.95431 1.70055 1.48130 1.42650 0.98528 0.85787 0.78914 0.79972 0.77183 1.19513 1.22941 1.17213 1.60519 1.57718 1.08733 1.02531 1.23096 0.94537 0.96763 0.91424 0.89909 1.23898 0.97975 1.03435 0.96501 1.23597 0.87069 0.95963 0.96179 1.88850 1.37428 1.64597 1.40705 1.22774 0.93630 0.98018 0.83385 0.90871 1.21494 0.99688 0.96619 1.00022 0.92901 0.94840 0.91637 0.92706 0.84326 0.90714 0.89177 0.90905 0.87565 0.93094 0.92773 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.94 8.46 71.98 0.61 -6.33 16 2 C 0.19 8.36 2.16 44.17 0.10 8.46 16 3 H 0.03 1.32 6.49 -2.39 -0.02 1.30 16 4 C -0.50 -28.38 9.42 25.60 0.24 -28.14 16 5 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 6 C 0.01 0.37 5.45 84.65 0.46 0.83 16 7 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 8 Si 0.95 44.41 24.37 68.60 1.67 46.08 16 9 H -0.27 -11.91 6.87 99.48 0.68 -11.23 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.25 -10.55 6.53 99.48 0.65 -9.90 16 12 N -0.67 -25.32 4.25 -468.24 -1.99 -27.31 16 13 C 0.05 1.62 3.33 45.90 0.15 1.77 16 14 H 0.08 2.57 7.44 -2.39 -0.02 2.55 16 15 C -0.18 -4.36 5.33 31.89 0.17 -4.19 16 16 C 0.05 1.05 7.72 72.66 0.56 1.61 16 17 O -0.40 -11.23 11.19 -148.98 -1.67 -12.89 16 18 C 0.08 2.33 4.06 30.97 0.13 2.45 16 19 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 20 C -0.12 -3.74 8.57 71.98 0.62 -3.12 16 21 H 0.05 2.05 8.13 -2.39 -0.02 2.03 16 22 H 0.03 1.37 3.27 -2.39 -0.01 1.37 16 23 H 0.06 2.07 6.26 -2.39 -0.01 2.06 16 24 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.34 12.47 7.48 -89.70 -0.67 11.80 16 26 H 0.07 1.89 7.57 -2.39 -0.02 1.87 16 27 H 0.09 1.95 7.64 -2.39 -0.02 1.93 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.65 7.51 -2.38 -0.02 1.63 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.06 2.22 7.89 -2.38 -0.02 2.20 16 Total: -1.00 -64.20 247.38 1.70 -62.50 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.35 Total: 17.82 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 3.03 Total: -26.66 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -1.69 Total: -86.85 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.67 Total: -12.89 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.67 Total: 46.08 kcal Total: -64.20 1.70 -62.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133464525.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.623 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds