Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.82067 * 2 1 4 4 O 1.43235 * 109.82773 * 239.11049 * 2 1 3 5 5 C 1.43825 * 109.87245 * 242.07134 * 4 2 1 6 6 C 1.54940 * 105.17614 * 335.64961 * 5 4 2 7 7 C 1.54385 * 109.82785 * 120.88730 * 2 1 3 8 8 H 1.08991 * 110.85056 * 22.76757 * 7 2 1 9 9 N 1.46902 * 110.84417 * 259.34994 * 7 2 1 10 10 C 1.46902 * 111.00009 * 187.19442 * 9 7 2 11 11 C 1.46898 * 111.00000 * 63.24440 * 9 7 2 12 12 C 1.50702 * 109.47021 * 189.99785 * 11 9 7 13 13 H 1.08001 * 120.00447 * 359.97438 * 12 11 9 14 14 C 1.37879 * 119.99966 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00256 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 119.99922 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.46940 * 89.99699 * 16 14 12 18 18 H 1.48497 * 109.46890 * 209.99564 * 16 14 12 19 19 H 1.48496 * 109.46983 * 329.99464 * 16 14 12 20 20 H 1.09009 * 109.46696 * 299.29703 * 1 2 3 21 21 H 1.08993 * 109.47421 * 59.29791 * 1 2 3 22 22 H 1.09007 * 109.47180 * 179.30300 * 1 2 3 23 23 H 1.08997 * 110.31762 * 216.70702 * 5 4 2 24 24 H 1.09000 * 110.34474 * 94.60585 * 5 4 2 25 25 H 1.08997 * 111.13018 * 278.48874 * 6 5 4 26 26 H 1.09003 * 111.15985 * 154.34383 * 6 5 4 27 27 H 1.08999 * 109.47085 * 62.78845 * 10 9 7 28 28 H 1.09004 * 109.47398 * 182.79578 * 10 9 7 29 29 H 1.09000 * 109.46841 * 302.79496 * 10 9 7 30 30 H 1.09003 * 109.47088 * 309.99183 * 11 9 7 31 31 H 1.08999 * 109.47472 * 69.99835 * 11 9 7 32 32 H 0.96998 * 120.00050 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 8 2.0159 -0.6918 -1.1563 5 6 2.7777 -1.8431 -0.7531 6 6 3.2744 -1.5197 0.6785 7 6 2.0537 -0.7456 1.2464 8 1 1.3018 -1.4347 1.6306 9 7 2.4697 0.2041 2.2871 10 6 3.1247 -0.4915 3.4030 11 6 1.3291 1.0000 2.7598 12 6 1.8270 2.1195 3.6373 13 1 2.8849 2.2285 3.8255 14 6 0.9320 3.0045 4.2000 15 7 1.3664 3.9812 4.9662 16 14 -0.8979 2.8156 3.8752 17 1 -1.4964 1.9367 4.9119 18 1 -1.5490 4.1494 3.9210 19 1 -1.1028 2.2105 2.5347 20 1 -0.3633 0.5029 0.8963 21 1 -0.3634 0.5247 -0.8835 22 1 -0.3634 -1.0276 -0.0125 23 1 3.6246 -1.9902 -1.4232 24 1 2.1456 -2.7311 -0.7426 25 1 4.1627 -0.8885 0.6529 26 1 3.4598 -2.4317 1.2460 27 1 4.0337 -0.9756 3.0460 28 1 3.3780 0.2284 4.1814 29 1 2.4483 -1.2433 3.8096 30 1 0.7981 1.4177 1.9044 31 1 0.6537 0.3634 3.3313 32 1 0.7367 4.6036 5.3624 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133807922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -64.047533 kcal Electronic energy + Delta-G solvation = -13472.677976 eV Core-core repulsion = 11239.406698 eV Total energy + Delta-G solvation = -2233.271278 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.83676 -37.67192 -34.68294 -32.63137 -32.12373 -29.71211 -27.34563 -25.79534 -22.93433 -22.32917 -21.23961 -19.06105 -17.97393 -16.98269 -16.56176 -15.71284 -15.59777 -15.10741 -14.76190 -14.44718 -14.28754 -13.98534 -13.47837 -13.13552 -13.05074 -12.70751 -12.58561 -12.27223 -12.05265 -11.88667 -11.76973 -11.48579 -11.30168 -10.79190 -10.47443 -9.11193 -8.29421 -6.32569 1.32623 1.34811 1.45091 2.32854 2.80169 3.03683 3.19912 3.53224 3.87683 4.09054 4.23964 4.32461 4.38569 4.45109 4.62406 4.64510 4.70479 4.84337 4.87050 4.95568 4.97466 5.11058 5.14502 5.21631 5.22623 5.54983 5.96021 6.05950 6.31678 6.61926 6.73733 7.30713 8.87146 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.044290 B = 0.011100 C = 0.009528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.044946 B = 2521.887064 C = 2938.000754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 H 0.066 0.934 4 O -0.396 6.396 5 C 0.050 3.950 6 C -0.141 4.141 7 C 0.048 3.952 8 H 0.055 0.945 9 N -0.538 5.538 10 C 0.040 3.960 11 C 0.167 3.833 12 C -0.517 4.517 13 H 0.039 0.961 14 C 0.009 3.991 15 N -0.948 5.948 16 Si 0.941 3.059 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.244 1.244 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.104 0.896 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.039 0.961 31 H -0.015 1.015 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -13.171 -9.237 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.025 3.975 3 H 0.084 0.916 4 O -0.316 6.316 5 C -0.026 4.026 6 C -0.178 4.178 7 C -0.061 4.061 8 H 0.072 0.928 9 N -0.263 5.263 10 C -0.108 4.108 11 C 0.040 3.960 12 C -0.555 4.555 13 H 0.057 0.943 14 C -0.189 4.189 15 N -0.588 5.588 16 Si 0.764 3.236 17 H -0.193 1.193 18 H -0.207 1.207 19 H -0.168 1.168 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.122 0.878 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.002 0.998 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.567 -12.649 -9.561 15.866 hybrid contribution -1.160 0.007 1.005 1.535 sum -1.727 -12.642 -8.556 15.363 Atomic orbital electron populations 1.22234 0.94512 1.02953 1.02390 1.22589 0.94372 0.96152 0.84364 0.91610 1.88412 1.71343 1.41673 1.30170 1.23549 0.95616 0.88464 0.94997 1.23290 0.97493 1.00777 0.96281 1.23292 0.97271 0.93062 0.92438 0.92768 1.61922 1.28851 1.23320 1.12163 1.22225 0.98515 0.96829 0.93267 1.20086 0.89219 0.92101 0.94583 1.21273 0.94360 1.11481 1.28395 0.94317 1.25826 1.04026 0.94532 0.94489 1.70044 1.36741 1.17743 1.34299 0.85812 0.79452 0.78028 0.80295 1.19283 1.20689 1.16793 0.92350 0.91333 0.91030 0.87796 0.90685 0.90250 0.87979 0.90001 0.93152 0.95893 0.94292 0.99774 0.92432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 9.21 71.98 0.66 -4.34 16 2 C 0.08 2.79 3.09 31.07 0.10 2.89 16 3 H 0.07 2.58 7.80 -2.39 -0.02 2.56 16 4 O -0.40 -12.22 11.03 -148.98 -1.64 -13.86 16 5 C 0.05 1.13 7.78 72.65 0.57 1.69 16 6 C -0.14 -3.51 5.50 32.05 0.18 -3.33 16 7 C 0.05 1.58 2.22 46.18 0.10 1.68 16 8 H 0.05 1.70 7.85 -2.39 -0.02 1.68 16 9 N -0.54 -21.98 4.58 -894.19 -4.09 -26.08 16 10 C 0.04 1.46 9.14 127.69 1.17 2.63 16 11 C 0.17 7.94 3.26 85.56 0.28 8.22 16 12 C -0.52 -29.91 8.97 25.60 0.23 -29.68 16 13 H 0.04 2.50 7.39 -2.91 -0.02 2.48 16 14 C 0.01 0.50 5.47 84.66 0.46 0.96 16 15 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 16 Si 0.94 43.77 27.47 68.60 1.88 45.66 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 20 H 0.06 1.98 6.03 -2.38 -0.01 1.96 16 21 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.07 1.89 8.14 -2.38 -0.02 1.88 16 23 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 26 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 2.46 7.27 -2.39 -0.02 2.44 16 28 H 0.05 2.17 6.70 -2.38 -0.02 2.15 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 1.84 4.16 -2.39 -0.01 1.83 16 31 H -0.02 -0.72 7.55 -2.39 -0.02 -0.74 16 32 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -65.99 252.47 1.21 -64.78 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 1.02 Total: 7.92 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 3.74 Total: -19.29 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -3.80 Total: -85.21 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -1.64 Total: -13.86 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Total: -65.99 1.21 -64.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133807922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.733 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds