Wall clock time and date at job start Mon Mar 30 2020 02:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.90507 * 2 1 4 4 C 1.55424 * 111.10921 * 236.03204 * 2 1 3 5 5 C 1.54312 * 103.05287 * 206.29949 * 4 2 1 6 6 H 1.08998 * 110.02663 * 262.80516 * 5 4 2 7 7 C 1.52997 * 109.89256 * 141.68874 * 5 4 2 8 8 O 1.42901 * 109.47558 * 174.91594 * 7 5 4 9 9 N 1.47453 * 107.23127 * 22.28550 * 5 4 2 10 10 C 1.46895 * 111.00290 * 123.26042 * 9 5 4 11 11 C 1.50692 * 109.47357 * 176.57357 * 10 9 5 12 12 H 1.07998 * 119.99823 * 359.97438 * 11 10 9 13 13 C 1.37879 * 120.00377 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99609 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00010 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47355 * 359.97438 * 15 13 11 17 17 H 1.48508 * 109.47002 * 120.00234 * 15 13 11 18 18 H 1.48507 * 109.46850 * 239.99708 * 15 13 11 19 19 C 1.47843 * 108.56333 * 0.98696 * 9 5 4 20 20 H 1.09002 * 109.47130 * 297.59517 * 1 2 3 21 21 H 1.08999 * 109.46716 * 57.59117 * 1 2 3 22 22 H 1.08993 * 109.46930 * 177.58769 * 1 2 3 23 23 H 1.09005 * 110.69468 * 87.90281 * 4 2 1 24 24 H 1.09006 * 110.84152 * 324.76512 * 4 2 1 25 25 H 1.09007 * 109.47170 * 294.91726 * 7 5 4 26 26 H 1.09003 * 109.47244 * 54.91234 * 7 5 4 27 27 H 0.96691 * 114.00247 * 180.02562 * 8 7 5 28 28 H 1.09006 * 109.46455 * 296.57282 * 10 9 5 29 29 H 1.09000 * 109.46835 * 56.56412 * 10 9 5 30 30 H 0.97003 * 120.00061 * 180.02562 * 14 13 11 31 31 H 1.09003 * 110.36950 * 94.73760 * 19 9 5 32 32 H 1.09004 * 110.37270 * 216.96204 * 19 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0898 -0.8101 -1.2025 5 6 3.4725 -1.2730 -0.6975 6 1 4.2477 -0.5987 -1.0614 7 6 3.7532 -2.6973 -1.1806 8 8 5.0810 -3.0733 -0.8096 9 7 3.4321 -1.2421 0.7762 10 6 3.7616 -2.5580 1.3396 11 6 3.7926 -2.4671 2.8435 12 1 3.5885 -1.5257 3.3318 13 6 4.0817 -3.5857 3.5960 14 7 4.3307 -4.7319 3.0012 15 14 4.1209 -3.4727 5.4601 16 1 3.8100 -2.0822 5.8784 17 1 3.1125 -4.3999 6.0335 18 1 5.4721 -3.8463 5.9503 19 6 2.0849 -0.8059 1.2010 20 1 -0.3633 0.4760 0.9108 21 1 -0.3633 0.5508 -0.8676 22 1 -0.3633 -1.0267 -0.0433 23 1 2.1937 -0.1733 -2.0811 24 1 1.4532 -1.6672 -1.4227 25 1 3.0401 -3.3833 -0.7233 26 1 3.6533 -2.7394 -2.2653 27 1 5.3282 -3.9666 -1.0848 28 1 3.0066 -3.2829 1.0349 29 1 4.7383 -2.8754 0.9744 30 1 4.5337 -5.5190 3.5306 31 1 1.4523 -1.6703 1.4027 32 1 2.1526 -0.1716 2.0849 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142448591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:13 Heat of formation + Delta-G solvation = -45.187847 kcal Electronic energy + Delta-G solvation = -13487.644040 eV Core-core repulsion = 11255.190579 eV Total energy + Delta-G solvation = -2232.453461 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.98998 -35.79161 -33.24256 -31.81885 -29.97082 -26.94079 -25.55006 -23.94015 -22.02691 -19.89312 -18.79679 -16.76599 -16.63715 -15.25593 -14.72817 -14.24077 -13.81979 -13.51247 -13.05396 -12.69412 -12.13345 -11.87690 -11.63646 -11.45511 -11.33524 -10.87117 -10.61652 -10.50084 -10.41059 -10.18253 -10.03625 -9.62892 -9.23937 -8.81416 -8.18178 -7.03383 -5.91528 -3.89592 3.36122 3.43260 3.48776 4.51529 4.66427 5.03349 5.12550 5.18017 5.44830 5.51771 5.62103 5.78483 5.83858 5.91805 5.94104 6.03435 6.09223 6.25017 6.30238 6.39208 6.69993 6.79069 6.85643 7.51115 7.56980 7.93699 8.17805 8.35517 8.47786 8.73118 9.19089 9.72193 11.19523 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.034304 B = 0.011893 C = 0.009391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.044221 B = 2353.838287 C = 2980.758632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 H 0.077 0.923 4 C -0.130 4.130 5 C 0.073 3.927 6 H 0.076 0.924 7 C 0.064 3.936 8 O -0.549 6.549 9 N -0.521 5.521 10 C 0.168 3.832 11 C -0.503 4.503 12 H 0.058 0.942 13 C 0.053 3.947 14 N -0.899 5.899 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.285 1.285 19 C 0.061 3.939 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.032 0.968 27 H 0.368 0.632 28 H -0.016 1.016 29 H 0.080 0.920 30 H 0.257 0.743 31 H 0.042 0.958 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 5.056 -8.345 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 H 0.095 0.905 4 C -0.168 4.168 5 C -0.036 4.036 6 H 0.094 0.906 7 C -0.015 4.015 8 O -0.353 6.353 9 N -0.245 5.245 10 C 0.044 3.956 11 C -0.542 4.542 12 H 0.076 0.924 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.068 4.068 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.214 0.786 28 H 0.001 0.999 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.753 5.818 -7.852 10.867 hybrid contribution -0.610 -1.291 0.512 1.517 sum -5.363 4.527 -7.340 10.155 Atomic orbital electron populations 1.21687 0.95150 1.01583 1.01160 1.22400 0.94916 0.99525 0.95791 0.90473 1.22866 0.96511 0.99491 0.97948 1.22459 0.95906 0.94237 0.91035 0.90562 1.22558 0.85303 0.97379 0.96246 1.86702 1.30915 1.36353 1.81378 1.63816 1.24822 1.32314 1.03580 1.20465 0.98313 0.82528 0.94339 1.21313 1.46088 0.95288 0.91505 0.92367 1.24943 0.95861 0.95417 0.98462 1.69971 1.48977 1.00009 1.35018 0.86520 0.77468 0.77936 0.85948 1.19790 1.21298 1.21092 1.22920 0.90063 0.97598 0.96174 0.92601 0.93151 0.92815 0.91619 0.91767 0.93013 0.94978 0.78591 0.99870 0.90249 0.93310 0.93960 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.31 37.16 0.35 -1.46 16 2 C -0.11 -1.69 3.65 -88.32 -0.32 -2.01 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.13 -1.99 5.95 -24.76 -0.15 -2.14 16 5 C 0.07 1.39 3.72 -66.72 -0.25 1.14 16 6 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 7 C 0.06 1.17 5.61 37.16 0.21 1.38 16 8 O -0.55 -11.02 10.70 -35.23 -0.38 -11.39 16 9 N -0.52 -12.02 5.20 -224.78 -1.17 -13.19 16 10 C 0.17 4.55 3.39 -4.98 -0.02 4.53 16 11 C -0.50 -14.79 8.68 -34.44 -0.30 -15.09 16 12 H 0.06 1.71 7.42 -52.49 -0.39 1.32 16 13 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 15 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 18 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 19 C 0.06 1.24 5.28 -2.30 -0.01 1.22 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.06 0.96 7.74 -51.93 -0.40 0.55 16 25 H 0.05 1.04 6.36 -51.93 -0.33 0.71 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.37 5.79 9.12 45.56 0.42 6.21 16 28 H -0.02 -0.47 6.44 -51.93 -0.33 -0.80 16 29 H 0.08 2.31 5.14 -51.93 -0.27 2.04 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.04 0.92 7.63 -51.93 -0.40 0.53 16 32 H 0.07 1.43 8.00 -51.93 -0.42 1.01 16 LS Contribution 254.21 15.07 3.83 3.83 Total: -1.00 -32.15 254.21 -6.80 -38.95 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.21 Total: 1.91 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.59 Total: -10.95 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: -0.43 Total: -39.69 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.38 Total: -11.39 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.15 -6.80 -38.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142448591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.234 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds