Wall clock time and date at job start Mon Mar 30 2020 02:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08994 * 110.28954 * 2 1 4 4 C 1.54262 * 110.32762 * 122.23883 * 2 1 3 5 5 C 1.54374 * 105.06139 * 118.89465 * 4 2 1 6 6 H 1.09004 * 110.41225 * 265.07672 * 5 4 2 7 7 C 1.52999 * 110.41147 * 142.63581 * 5 4 2 8 8 O 1.42902 * 109.47180 * 178.37204 * 7 5 4 9 9 N 1.48561 * 104.59826 * 23.85084 * 5 4 2 10 10 C 1.46893 * 111.00208 * 200.95739 * 9 5 4 11 11 C 1.50706 * 109.47176 * 185.29305 * 10 9 5 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.48561 * 104.21970 * 320.52080 * 9 5 4 20 20 H 1.09001 * 109.47122 * 180.67403 * 1 2 3 21 21 H 1.09005 * 109.47396 * 300.66840 * 1 2 3 22 22 H 1.09001 * 109.47726 * 60.66848 * 1 2 3 23 23 H 1.08996 * 110.32393 * 237.79494 * 4 2 1 24 24 H 1.09004 * 110.32016 * 359.97438 * 4 2 1 25 25 H 1.08997 * 109.46788 * 298.36485 * 7 5 4 26 26 H 1.08998 * 109.47435 * 58.37207 * 7 5 4 27 27 H 0.96699 * 114.00183 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.46739 * 65.29714 * 10 9 5 29 29 H 1.09000 * 109.47767 * 305.29973 * 10 9 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 31 31 H 1.09001 * 110.40942 * 158.26015 * 19 9 5 32 32 H 1.09001 * 110.41054 * 280.69912 * 19 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0658 -0.7717 1.2235 5 6 2.8806 -1.9428 0.6338 6 1 2.2647 -2.8398 0.5691 7 6 4.1248 -2.2084 1.4837 8 8 4.8432 -3.3189 0.9425 9 7 3.2692 -1.4822 -0.7241 10 6 3.6067 -2.6202 -1.5894 11 6 4.1188 -2.1109 -2.9122 12 1 4.1871 -1.0481 -3.0917 13 6 4.5001 -3.0017 -3.8930 14 7 4.4164 -4.2959 -3.6745 15 14 5.1355 -2.3704 -5.5322 16 1 5.1313 -0.8854 -5.5261 17 1 6.5204 -2.8609 -5.7484 18 1 4.2596 -2.8629 -6.6255 19 6 2.0660 -0.7699 -1.2260 20 1 -0.3633 -1.0276 0.0121 21 1 -0.3634 0.5242 0.8840 22 1 -0.3634 0.5034 -0.8959 23 1 2.7081 -0.1286 1.8251 24 1 1.2388 -1.1501 1.8244 25 1 4.7636 -1.3253 1.4786 26 1 3.8246 -2.4339 2.5070 27 1 5.6460 -3.5443 1.4320 28 1 2.7169 -3.2278 -1.7540 29 1 4.3764 -3.2253 -1.1104 30 1 4.6850 -4.9226 -4.3644 31 1 2.3392 -0.0759 -2.0210 32 1 1.3227 -1.4833 -1.5818 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142448810.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:14 Heat of formation + Delta-G solvation = -55.770392 kcal Electronic energy + Delta-G solvation = -13326.387869 eV Core-core repulsion = 11093.475515 eV Total energy + Delta-G solvation = -2232.912354 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.69975 -35.84591 -33.34673 -31.79095 -30.13615 -26.79273 -25.53979 -24.17247 -21.60796 -19.72099 -19.36692 -16.75440 -16.09424 -15.31134 -15.09698 -14.44228 -13.72572 -13.28085 -12.93348 -12.71967 -12.25670 -11.96955 -11.88887 -11.42331 -11.13483 -10.83821 -10.50746 -10.41648 -10.36607 -10.19672 -10.01265 -9.63440 -9.43935 -8.90532 -8.27606 -7.27062 -5.89044 -3.89093 3.37303 3.44062 3.49419 4.52170 4.67921 4.91936 5.12984 5.28742 5.43904 5.47074 5.68895 5.75927 5.83241 5.87790 5.92851 6.04917 6.15753 6.25378 6.33824 6.39680 6.59956 6.76600 6.78943 7.42951 7.52226 7.92838 8.15389 8.33804 8.37963 8.67814 9.19569 9.73241 11.21934 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033944 B = 0.011133 C = 0.008990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.678451 B = 2514.382150 C = 3113.862747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.073 0.927 4 C -0.111 4.111 5 C 0.056 3.944 6 H 0.047 0.953 7 C 0.096 3.904 8 O -0.553 6.553 9 N -0.499 5.499 10 C 0.178 3.822 11 C -0.502 4.502 12 H 0.059 0.941 13 C 0.053 3.947 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.286 1.286 19 C 0.049 3.951 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.034 0.966 27 H 0.366 0.634 28 H -0.015 1.015 29 H 0.061 0.939 30 H 0.258 0.742 31 H 0.075 0.925 32 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 6.045 9.904 12.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.053 4.053 6 H 0.065 0.935 7 C 0.017 3.983 8 O -0.357 6.357 9 N -0.224 5.224 10 C 0.053 3.947 11 C -0.541 4.541 12 H 0.077 0.923 13 C -0.147 4.147 14 N -0.538 5.538 15 Si 0.722 3.278 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.213 1.213 19 C -0.080 4.080 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.211 0.789 28 H 0.003 0.997 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.149 6.221 9.378 11.995 hybrid contribution 0.098 -0.382 -0.611 0.727 sum -4.051 5.839 8.768 11.286 Atomic orbital electron populations 1.21846 0.95434 1.01524 1.01093 1.21937 0.94792 0.99656 0.95601 0.90881 1.22309 0.98597 0.96698 0.97291 1.22571 0.93817 0.96111 0.92822 0.93534 1.22076 0.93264 0.88936 0.94004 1.86748 1.41124 1.50823 1.57016 1.65456 1.30135 1.26158 1.00619 1.20054 0.96088 0.87238 0.91352 1.21218 1.41849 0.93122 0.97903 0.92266 1.24976 0.96243 0.94836 0.98687 1.70000 1.48896 1.00976 1.33888 0.86503 0.78446 0.78954 0.83859 1.19789 1.21103 1.21255 1.22986 0.92074 0.97164 0.95742 0.92864 0.93144 0.92719 0.91592 0.91913 0.93407 0.94826 0.78888 0.99739 0.92094 0.93228 0.90688 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.90 37.15 0.33 -1.51 16 2 C -0.10 -1.57 3.65 -89.24 -0.33 -1.90 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.11 -1.67 6.20 -25.35 -0.16 -1.83 16 5 C 0.06 1.08 2.68 -66.07 -0.18 0.90 16 6 H 0.05 0.97 8.00 -51.93 -0.42 0.55 16 7 C 0.10 1.63 6.61 37.16 0.25 1.87 16 8 O -0.55 -10.68 11.28 -35.23 -0.40 -11.07 16 9 N -0.50 -11.49 5.04 -223.57 -1.13 -12.62 16 10 C 0.18 4.98 4.47 -4.98 -0.02 4.96 16 11 C -0.50 -14.93 8.82 -34.44 -0.30 -15.23 16 12 H 0.06 1.75 7.61 -52.49 -0.40 1.35 16 13 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -27.96 13.29 55.43 0.74 -27.22 16 15 Si 0.89 22.51 29.54 -169.99 -5.02 17.49 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 C 0.05 0.99 5.51 -2.18 -0.01 0.98 16 20 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 24 H 0.06 0.83 7.71 -51.93 -0.40 0.43 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.37 5.02 9.12 45.56 0.42 5.44 16 28 H -0.02 -0.46 7.88 -51.93 -0.41 -0.87 16 29 H 0.06 1.84 5.76 -51.93 -0.30 1.54 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.07 1.58 7.94 -51.93 -0.41 1.17 16 32 H 0.04 0.78 7.54 -51.93 -0.39 0.39 16 LS Contribution 259.34 15.07 3.91 3.91 Total: -1.00 -33.26 259.34 -6.81 -40.07 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.39 Total: -0.27 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.52 Total: -10.28 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.39 Total: -39.84 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.40 Total: -11.07 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -33.26 -6.81 -40.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142448810.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.704 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds