Wall clock time and date at job start Mon Mar 30 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.64694 * 2 1 4 4 C 1.54588 * 110.72497 * 236.64976 * 2 1 3 5 5 C 1.53994 * 105.14028 * 219.68813 * 4 2 1 6 6 H 1.08998 * 110.08505 * 118.22159 * 5 4 2 7 7 C 1.52999 * 109.91582 * 239.42306 * 5 4 2 8 8 O 1.42903 * 109.47256 * 184.04527 * 7 5 4 9 9 N 1.47896 * 107.05752 * 358.77303 * 5 4 2 10 10 C 1.46900 * 111.00139 * 145.84522 * 9 5 4 11 11 C 1.50701 * 109.47536 * 169.99878 * 10 9 5 12 12 H 1.08005 * 119.99531 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00462 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99420 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00230 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47044 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47230 * 119.99976 * 15 13 11 18 18 H 1.48502 * 109.47390 * 240.00204 * 15 13 11 19 19 C 1.48537 * 105.82127 * 25.33292 * 9 5 4 20 20 H 1.09000 * 109.47177 * 298.30937 * 1 2 3 21 21 H 1.09005 * 109.47039 * 58.30388 * 1 2 3 22 22 H 1.08993 * 109.47432 * 178.30470 * 1 2 3 23 23 H 1.09002 * 110.31065 * 100.77088 * 4 2 1 24 24 H 1.09004 * 110.31372 * 338.60214 * 4 2 1 25 25 H 1.08997 * 109.47286 * 64.04087 * 7 5 4 26 26 H 1.09008 * 109.47201 * 304.03867 * 7 5 4 27 27 H 0.96700 * 114.00311 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47163 * 290.00130 * 10 9 5 29 29 H 1.09004 * 109.47189 * 49.99859 * 10 9 5 30 30 H 0.97005 * 119.99571 * 180.02562 * 14 13 11 31 31 H 1.08998 * 110.66503 * 79.22733 * 19 9 5 32 32 H 1.09002 * 110.66562 * 202.19427 * 19 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0771 -0.7949 -1.2077 5 6 3.2893 -1.5721 -0.6620 6 1 3.1196 -2.6446 -0.7562 7 6 4.5517 -1.1750 -1.4298 8 8 5.6519 -1.9687 -0.9807 9 7 3.4317 -1.2079 0.7644 10 6 3.9211 -2.3471 1.5523 11 6 4.2864 -1.8798 2.9377 12 1 4.1666 -0.8405 3.2061 13 6 4.7726 -2.7792 3.8628 14 7 4.9179 -4.0448 3.5359 15 14 5.2247 -2.2001 5.5802 16 1 4.9696 -0.7416 5.6939 17 1 4.4008 -2.9257 6.5802 18 1 6.6626 -2.4727 5.8320 19 6 2.0782 -0.7924 1.2134 20 1 -0.3633 0.4873 0.9047 21 1 -0.3633 0.5400 -0.8744 22 1 -0.3634 -1.0271 -0.0304 23 1 2.3897 -0.1134 -1.9990 24 1 1.3208 -1.4861 -1.5797 25 1 4.7679 -0.1213 -1.2535 26 1 4.3957 -1.3405 -2.4959 27 1 6.4874 -1.7703 -1.4252 28 1 3.1406 -3.1050 1.6185 29 1 4.8004 -2.7724 1.0686 30 1 5.2596 -4.6776 4.1869 31 1 1.4559 -1.6639 1.4166 32 1 2.1442 -0.1544 2.0947 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142449033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:16 Heat of formation + Delta-G solvation = -56.155704 kcal Electronic energy + Delta-G solvation = -13291.789519 eV Core-core repulsion = 11058.860456 eV Total energy + Delta-G solvation = -2232.929063 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.70410 -35.81892 -33.36107 -31.81770 -30.16221 -26.81183 -25.52246 -24.19317 -21.56122 -19.88208 -19.29982 -16.80653 -16.17111 -15.20703 -14.97631 -14.43305 -13.79758 -13.29370 -13.05007 -12.66389 -12.30211 -11.96275 -11.86472 -11.49806 -11.05690 -10.86963 -10.51587 -10.46054 -10.43140 -10.17118 -10.01925 -9.65669 -9.40959 -8.97449 -8.29499 -7.22752 -5.89722 -3.89603 3.37515 3.44211 3.49672 4.51941 4.70020 4.90512 5.08045 5.27016 5.40769 5.46198 5.66841 5.76686 5.81087 5.88233 5.92840 6.01108 6.18307 6.22184 6.35329 6.38386 6.56637 6.74531 6.78206 7.40606 7.48817 7.93004 8.15653 8.31316 8.35654 8.67670 9.18340 9.72977 11.21461 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033653 B = 0.010963 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.828516 B = 2553.537736 C = 3135.045299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.076 0.924 4 C -0.117 4.117 5 C 0.060 3.940 6 H 0.049 0.951 7 C 0.097 3.903 8 O -0.555 6.555 9 N -0.505 5.505 10 C 0.185 3.815 11 C -0.499 4.499 12 H 0.060 0.940 13 C 0.052 3.948 14 N -0.899 5.899 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.052 3.948 20 H 0.055 0.945 21 H 0.050 0.950 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.366 0.634 28 H -0.014 1.014 29 H 0.049 0.951 30 H 0.258 0.742 31 H 0.036 0.964 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 6.691 -9.526 12.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.049 4.049 6 H 0.067 0.933 7 C 0.018 3.982 8 O -0.358 6.358 9 N -0.229 5.229 10 C 0.059 3.941 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.148 4.148 14 N -0.539 5.539 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.211 1.211 19 C -0.076 4.076 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.211 0.789 28 H 0.004 0.996 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.003 6.669 -8.982 12.255 hybrid contribution 0.167 -0.310 0.511 0.620 sum -4.835 6.359 -8.471 11.644 Atomic orbital electron populations 1.21760 0.95319 1.01528 1.01180 1.22127 0.94661 0.99648 0.95558 0.90509 1.22410 0.96702 0.98593 0.97819 1.22313 0.92447 0.98025 0.92158 0.93292 1.22175 0.87190 0.94293 0.94508 1.86721 1.19261 1.63161 1.66663 1.64760 1.20841 1.37725 0.99578 1.19945 0.95366 0.86148 0.92595 1.21191 1.41737 0.95005 0.95842 0.92179 1.24983 0.96147 0.94889 0.98781 1.69992 1.46905 1.02276 1.34774 0.86483 0.77989 0.78762 0.84408 1.19767 1.21258 1.21103 1.23112 0.90196 0.97809 0.96502 0.92633 0.93130 0.92856 0.91718 0.91738 0.93577 0.95008 0.78936 0.99621 0.93331 0.93204 0.94597 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.16 37.16 0.34 -1.44 16 2 C -0.10 -1.56 3.66 -88.76 -0.32 -1.88 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 C -0.12 -1.76 6.15 -25.38 -0.16 -1.91 16 5 C 0.06 1.15 2.79 -66.65 -0.19 0.97 16 6 H 0.05 1.03 7.77 -51.93 -0.40 0.63 16 7 C 0.10 1.64 6.46 37.16 0.24 1.88 16 8 O -0.55 -10.65 12.17 -35.23 -0.43 -11.08 16 9 N -0.50 -11.60 4.85 -224.00 -1.09 -12.68 16 10 C 0.18 5.17 4.39 -4.98 -0.02 5.15 16 11 C -0.50 -14.83 8.91 -34.44 -0.31 -15.14 16 12 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -28.02 13.29 55.43 0.74 -27.28 16 15 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 19 C 0.05 1.05 5.56 -1.90 -0.01 1.04 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 23 H 0.06 0.83 7.69 -51.93 -0.40 0.44 16 24 H 0.06 0.89 7.82 -51.93 -0.41 0.48 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.37 4.94 9.12 45.56 0.42 5.36 16 28 H -0.01 -0.42 7.83 -51.93 -0.41 -0.83 16 29 H 0.05 1.48 6.66 -51.93 -0.35 1.14 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.04 0.76 7.72 -51.93 -0.40 0.36 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -33.30 261.38 -6.83 -40.13 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.45 Total: -0.67 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -0.52 Total: -9.87 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: -0.35 Total: -39.97 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.43 Total: -11.08 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.30 -6.83 -40.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142449033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.023 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds