Wall clock time and date at job start Mon Mar 30 2020 02:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.64694 * 2 1 4 4 C 1.54588 * 110.72497 * 236.64976 * 2 1 3 5 5 C 1.53994 * 105.14028 * 219.68813 * 4 2 1 6 6 H 1.08998 * 110.08505 * 118.22159 * 5 4 2 7 7 C 1.52999 * 109.91582 * 239.42306 * 5 4 2 8 8 O 1.42903 * 109.47256 * 184.04527 * 7 5 4 9 9 N 1.47896 * 107.05752 * 358.77303 * 5 4 2 10 10 C 1.46900 * 111.00139 * 145.84522 * 9 5 4 11 11 C 1.50701 * 109.47536 * 169.99878 * 10 9 5 12 12 H 1.08005 * 119.99531 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00462 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99420 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00230 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47044 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47230 * 119.99976 * 15 13 11 18 18 H 1.48502 * 109.47390 * 240.00204 * 15 13 11 19 19 C 1.48537 * 105.82127 * 25.33292 * 9 5 4 20 20 H 1.09000 * 109.47177 * 298.30937 * 1 2 3 21 21 H 1.09005 * 109.47039 * 58.30388 * 1 2 3 22 22 H 1.08993 * 109.47432 * 178.30470 * 1 2 3 23 23 H 1.09002 * 110.31065 * 100.77088 * 4 2 1 24 24 H 1.09004 * 110.31372 * 338.60214 * 4 2 1 25 25 H 1.08997 * 109.47286 * 64.04087 * 7 5 4 26 26 H 1.09008 * 109.47201 * 304.03867 * 7 5 4 27 27 H 0.96700 * 114.00311 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47163 * 290.00130 * 10 9 5 29 29 H 1.09004 * 109.47189 * 49.99859 * 10 9 5 30 30 H 0.97005 * 119.99571 * 180.02562 * 14 13 11 31 31 H 1.08998 * 110.66503 * 79.22733 * 19 9 5 32 32 H 1.09002 * 110.66562 * 202.19427 * 19 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0771 -0.7949 -1.2077 5 6 3.2893 -1.5721 -0.6620 6 1 3.1196 -2.6446 -0.7562 7 6 4.5517 -1.1750 -1.4298 8 8 5.6519 -1.9687 -0.9807 9 7 3.4317 -1.2079 0.7644 10 6 3.9211 -2.3471 1.5523 11 6 4.2864 -1.8798 2.9377 12 1 4.1666 -0.8405 3.2061 13 6 4.7726 -2.7792 3.8628 14 7 4.9179 -4.0448 3.5359 15 14 5.2247 -2.2001 5.5802 16 1 4.9696 -0.7416 5.6939 17 1 4.4008 -2.9257 6.5802 18 1 6.6626 -2.4727 5.8320 19 6 2.0782 -0.7924 1.2134 20 1 -0.3633 0.4873 0.9047 21 1 -0.3633 0.5400 -0.8744 22 1 -0.3634 -1.0271 -0.0304 23 1 2.3897 -0.1134 -1.9990 24 1 1.3208 -1.4861 -1.5797 25 1 4.7679 -0.1213 -1.2535 26 1 4.3957 -1.3405 -2.4959 27 1 6.4874 -1.7703 -1.4252 28 1 3.1406 -3.1050 1.6185 29 1 4.8004 -2.7724 1.0686 30 1 5.2596 -4.6776 4.1869 31 1 1.4559 -1.6639 1.4166 32 1 2.1442 -0.1544 2.0947 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142449033.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:16 Heat of formation + Delta-G solvation = -82.507794 kcal Electronic energy + Delta-G solvation = -13292.932231 eV Core-core repulsion = 11058.860456 eV Total energy + Delta-G solvation = -2234.071775 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.23777 -37.25158 -35.37928 -33.59218 -31.73058 -28.72791 -26.94850 -25.82859 -23.50928 -21.36828 -20.78066 -18.49623 -18.15078 -16.85821 -16.59005 -16.15643 -15.52285 -14.77192 -14.49078 -14.31200 -13.81645 -13.73099 -13.35835 -13.12079 -12.80062 -12.61230 -12.34691 -12.22612 -11.84085 -11.69693 -11.51485 -11.36564 -11.12763 -10.77277 -10.57736 -9.11417 -8.19560 -6.29937 1.37644 1.39448 1.53243 2.39741 3.11889 3.34220 3.41360 3.79926 3.97806 4.09542 4.32738 4.46552 4.56173 4.63747 4.68547 4.82837 4.85223 4.91045 5.01075 5.11233 5.13429 5.28778 5.30725 5.41924 5.53249 5.65412 6.07906 6.34349 6.58509 6.86469 7.09167 7.39103 8.92320 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.033653 B = 0.010963 C = 0.008929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.828516 B = 2553.537736 C = 3135.045299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.089 0.911 4 C -0.106 4.106 5 C 0.048 3.952 6 H 0.018 0.982 7 C 0.096 3.904 8 O -0.593 6.593 9 N -0.515 5.515 10 C 0.206 3.794 11 C -0.520 4.520 12 H 0.058 0.942 13 C -0.004 4.004 14 N -0.937 5.937 15 Si 0.973 3.027 16 H -0.263 1.263 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.045 3.955 20 H 0.059 0.941 21 H 0.080 0.920 22 H 0.047 0.953 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.387 0.613 28 H -0.052 1.052 29 H 0.015 0.985 30 H 0.263 0.737 31 H 0.016 0.984 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 8.611 -10.164 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.144 4.144 5 C -0.062 4.062 6 H 0.037 0.963 7 C 0.019 3.981 8 O -0.400 6.400 9 N -0.239 5.239 10 C 0.079 3.921 11 C -0.558 4.558 12 H 0.076 0.924 13 C -0.201 4.201 14 N -0.578 5.578 15 Si 0.797 3.203 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.083 4.083 20 H 0.078 0.922 21 H 0.099 0.901 22 H 0.066 0.934 23 H 0.118 0.882 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.236 0.764 28 H -0.035 1.035 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.577 8.609 -9.650 14.083 hybrid contribution 0.356 -0.939 0.661 1.202 sum -5.221 7.670 -8.989 12.918 Atomic orbital electron populations 1.21728 0.92825 1.01824 1.02858 1.22096 0.96622 0.99231 0.92812 0.89310 1.22418 0.94921 0.98848 0.98239 1.22594 0.96026 0.97174 0.90362 0.96340 1.22294 0.85483 0.94199 0.96163 1.86672 1.21128 1.64178 1.68061 1.64665 1.22684 1.35139 1.01414 1.19490 0.92911 0.86875 0.92822 1.21478 1.42329 0.95021 0.97003 0.92392 1.25996 0.95635 0.94857 1.03621 1.70134 1.47382 1.03659 1.36590 0.85280 0.77934 0.78703 0.78343 1.18695 1.20197 1.20205 1.23184 0.88921 0.97531 0.98639 0.92235 0.90106 0.93378 0.88222 0.90308 0.92765 0.90921 0.76437 1.03484 0.96717 0.92789 0.96565 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.16 71.98 0.66 -2.35 16 2 C -0.09 -2.53 3.66 -9.59 -0.04 -2.57 16 3 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.11 -2.90 6.15 31.47 0.19 -2.70 16 5 C 0.05 1.82 2.79 45.06 0.13 1.95 16 6 H 0.02 0.81 7.77 -2.39 -0.02 0.79 16 7 C 0.10 3.13 6.46 71.98 0.46 3.59 16 8 O -0.59 -22.97 12.17 -148.98 -1.81 -24.78 16 9 N -0.52 -24.28 4.85 -862.61 -4.18 -28.46 16 10 C 0.21 12.15 4.39 85.56 0.38 12.53 16 11 C -0.52 -31.93 8.91 25.60 0.23 -31.70 16 12 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 13 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 14 N -0.94 -60.07 13.29 21.45 0.28 -59.79 16 15 Si 0.97 46.72 29.54 68.60 2.03 48.74 16 16 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 19 C 0.05 1.86 5.56 86.65 0.48 2.34 16 20 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 22 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 23 H 0.10 2.08 7.69 -2.39 -0.02 2.06 16 24 H 0.08 1.94 7.82 -2.39 -0.02 1.92 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.39 10.34 9.12 -74.06 -0.68 9.66 16 28 H -0.05 -3.39 7.83 -2.39 -0.02 -3.41 16 29 H 0.01 0.96 6.66 -2.38 -0.02 0.94 16 30 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 31 H 0.02 0.71 7.72 -2.39 -0.02 0.69 16 32 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -75.05 261.38 -0.32 -75.37 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.41 Total: 7.60 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 2.96 Total: -18.68 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -3.90 Total: -88.25 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -1.81 Total: -24.78 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -75.05 -0.32 -75.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142449033.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.136 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds