Wall clock time and date at job start Mon Mar 30 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46231 * 2 1 4 4 C 1.53043 * 109.46136 * 240.04000 * 2 1 3 5 5 C 1.53115 * 109.27823 * 180.80305 * 4 2 1 6 6 O 1.42899 * 109.52428 * 297.74847 * 5 4 2 7 7 C 1.50699 * 109.57531 * 177.58764 * 5 4 2 8 8 H 1.07997 * 120.00059 * 355.99004 * 7 5 4 9 9 C 1.37874 * 120.00086 * 175.99050 * 7 5 4 10 10 N 1.31516 * 120.00268 * 1.99807 * 9 7 5 11 11 Si 1.86798 * 119.99983 * 182.00420 * 9 7 5 12 12 H 1.48502 * 109.47524 * 84.98899 * 11 9 7 13 13 H 1.48507 * 109.47098 * 204.98793 * 11 9 7 14 14 H 1.48501 * 109.47259 * 324.98633 * 11 9 7 15 15 C 1.53124 * 109.16153 * 57.65332 * 5 4 2 16 16 C 1.53036 * 109.27728 * 302.34334 * 15 5 4 17 17 N 1.46843 * 109.46583 * 119.98221 * 2 1 3 18 18 C 1.46896 * 111.00001 * 305.85517 * 17 2 1 19 19 H 1.09003 * 109.46866 * 300.01762 * 1 2 3 20 20 H 1.09002 * 109.47427 * 60.01630 * 1 2 3 21 21 H 1.09001 * 109.46890 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.50527 * 60.85581 * 4 2 1 23 23 H 1.09007 * 109.50181 * 300.74175 * 4 2 1 24 24 H 0.96701 * 114.00428 * 173.60418 * 6 5 4 25 25 H 0.96999 * 120.00009 * 180.02562 * 10 9 7 26 26 H 1.08997 * 109.50337 * 62.28291 * 15 5 4 27 27 H 1.09001 * 109.50342 * 182.36905 * 15 5 4 28 28 H 1.08997 * 109.46652 * 179.19582 * 16 15 5 29 29 H 1.08998 * 109.46335 * 299.16531 * 16 15 5 30 30 H 1.08994 * 109.47074 * 291.83290 * 18 17 2 31 31 H 1.08997 * 109.46886 * 51.83546 * 18 17 2 32 32 H 1.09002 * 109.46936 * 171.83115 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7206 -1.2502 5 6 3.5709 -0.7358 -1.2359 6 8 4.0622 0.6055 -1.2770 7 6 4.0795 -1.4954 -2.4339 8 1 3.3828 -1.9805 -3.1014 9 6 5.4344 -1.5712 -2.6777 10 7 6.2850 -1.0140 -1.8436 11 14 6.0621 -2.4652 -4.1931 12 1 6.0489 -1.5400 -5.3546 13 1 7.4496 -2.9358 -3.9509 14 1 5.1869 -3.6304 -4.4784 15 6 4.0548 -1.4188 0.0463 16 6 3.4866 -0.6779 1.2588 17 7 2.0193 -0.6919 1.1992 18 6 1.4374 -0.1109 2.4165 19 1 -0.3633 0.5141 0.8899 20 1 -0.3634 0.5136 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.6894 -0.1978 -2.1400 23 1 1.6659 -1.7445 -1.2580 24 1 5.0208 0.6767 -1.1724 25 1 7.2381 -1.0670 -2.0154 26 1 3.7125 -2.4535 0.0589 27 1 5.1440 -1.3952 0.0824 28 1 3.8176 -1.1702 2.1732 29 1 3.8404 0.3531 1.2531 30 1 1.8279 0.8964 2.5608 31 1 0.3528 -0.0693 2.3165 32 1 1.6997 -0.7289 3.2752 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157143547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:03 Heat of formation + Delta-G solvation = -74.672467 kcal Electronic energy + Delta-G solvation = -13830.012373 eV Core-core repulsion = 11596.280363 eV Total energy + Delta-G solvation = -2233.732010 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.35915 -37.17779 -34.08930 -33.20923 -32.46007 -28.76430 -27.42397 -25.88713 -23.44604 -21.90372 -20.29260 -18.76593 -17.01315 -16.72196 -16.26726 -15.95471 -15.49893 -15.10546 -14.49086 -14.18267 -13.54782 -13.16210 -12.98295 -12.90889 -12.73605 -12.64264 -12.49163 -12.27071 -12.04504 -11.90285 -11.68202 -11.60755 -10.77255 -10.53252 -9.97449 -9.13378 -8.15453 -6.32460 1.39908 1.41375 1.50464 2.39933 3.04737 3.11945 4.05067 4.13388 4.24067 4.32898 4.45911 4.54083 4.68308 4.71101 4.81561 4.84954 4.94888 4.97945 5.08076 5.13909 5.26053 5.36325 5.45734 5.56554 5.73680 5.97421 6.21852 6.29065 6.37844 6.72525 7.38352 7.52277 8.86373 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.058330 B = 0.011160 C = 0.010297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.908469 B = 2508.252134 C = 2718.553697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.020 0.980 4 C -0.084 4.084 5 C 0.236 3.764 6 O -0.599 6.599 7 C -0.561 4.561 8 H 0.049 0.951 9 C 0.028 3.972 10 N -0.915 5.915 11 Si 0.957 3.043 12 H -0.278 1.278 13 H -0.279 1.279 14 H -0.272 1.272 15 C -0.122 4.122 16 C 0.068 3.932 17 N -0.544 5.544 18 C 0.020 3.980 19 H 0.073 0.927 20 H 0.063 0.937 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.371 0.629 25 H 0.268 0.732 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.088 0.912 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.036 0.829 5.648 9.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.022 4.022 3 H 0.038 0.962 4 C -0.122 4.122 5 C 0.197 3.803 6 O -0.407 6.407 7 C -0.599 4.599 8 H 0.068 0.932 9 C -0.171 4.171 10 N -0.556 5.556 11 Si 0.783 3.217 12 H -0.204 1.204 13 H -0.205 1.205 14 H -0.196 1.196 15 C -0.160 4.160 16 C -0.060 4.060 17 N -0.270 5.270 18 C -0.128 4.128 19 H 0.091 0.909 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.221 0.779 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.107 0.893 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.646 0.496 5.572 9.474 hybrid contribution 1.665 0.258 -0.815 1.871 sum -5.981 0.753 4.757 7.680 Atomic orbital electron populations 1.21897 0.92495 1.02724 1.02415 1.21534 0.96161 0.94446 0.90076 0.96150 1.21498 0.94912 0.99686 0.96131 1.18862 0.90229 0.79594 0.91635 1.86094 1.27720 1.30388 1.96530 1.22073 0.92639 1.33705 1.11512 0.93243 1.25666 0.96862 0.95603 0.99003 1.69651 1.02805 1.45973 1.37124 0.85592 0.77487 0.78808 0.79805 1.20411 1.20451 1.19630 1.22009 1.00872 0.98199 0.94951 1.21981 0.87432 0.97955 0.98608 1.62009 1.07066 1.55057 1.02820 1.22533 1.01137 0.97167 0.91971 0.90864 0.91772 0.91682 0.93316 0.91770 0.77944 0.92257 0.94008 0.91651 0.90782 0.96643 0.96399 0.89318 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 8.79 71.98 0.63 -3.28 16 2 C 0.09 3.25 2.31 44.94 0.10 3.35 16 3 H 0.02 0.86 7.76 -2.38 -0.02 0.84 16 4 C -0.08 -3.76 4.33 30.65 0.13 -3.63 16 5 C 0.24 12.11 0.67 -11.46 -0.01 12.10 16 6 O -0.60 -32.36 11.78 -148.98 -1.75 -34.12 16 7 C -0.56 -31.37 8.23 25.60 0.21 -31.15 16 8 H 0.05 2.76 7.75 -2.91 -0.02 2.74 16 9 C 0.03 1.53 5.26 84.65 0.44 1.97 16 10 N -0.91 -50.12 9.82 21.45 0.21 -49.91 16 11 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 C -0.12 -5.86 4.82 30.65 0.15 -5.71 16 16 C 0.07 2.76 5.33 86.32 0.46 3.22 16 17 N -0.54 -19.70 4.75 -897.19 -4.26 -23.95 16 18 C 0.02 0.54 9.30 127.69 1.19 1.73 16 19 H 0.07 1.73 6.15 -2.39 -0.01 1.72 16 20 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 21 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 24 H 0.37 20.61 7.02 -74.06 -0.52 20.09 16 25 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 26 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.06 3.43 6.41 -2.39 -0.02 3.42 16 28 H 0.07 2.67 8.12 -2.39 -0.02 2.65 16 29 H 0.02 0.66 7.76 -2.39 -0.02 0.64 16 30 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 2.06 5.75 -2.39 -0.01 2.04 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -58.73 248.25 0.11 -58.62 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.57 Total: 25.31 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 3.31 Total: -21.41 kcal Atomic # 7 Polarization: -69.81 SS G_CDS: -4.05 Total: -73.86 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.75 Total: -34.12 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -58.73 0.11 -58.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157143547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.049 kcal (2) G-P(sol) polarization free energy of solvation -58.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds