Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.46086 * 2 1 4 4 C 1.53042 * 109.45624 * 240.02800 * 2 1 3 5 5 C 1.53113 * 109.27747 * 180.80925 * 4 2 1 6 6 O 1.42903 * 109.52220 * 177.56272 * 5 4 2 7 7 C 1.50702 * 109.57874 * 297.71478 * 5 4 2 8 8 H 1.07998 * 119.99564 * 359.84671 * 7 5 4 9 9 C 1.37871 * 120.00195 * 179.84321 * 7 5 4 10 10 N 1.31513 * 119.99953 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 119.99780 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47209 * 90.00325 * 11 9 7 13 13 H 1.48501 * 109.47074 * 210.00062 * 11 9 7 14 14 H 1.48500 * 109.47331 * 330.00038 * 11 9 7 15 15 C 1.53116 * 109.16402 * 57.65441 * 5 4 2 16 16 C 1.53034 * 109.27908 * 302.34544 * 15 5 4 17 17 N 1.46841 * 109.52239 * 59.17553 * 16 15 5 18 18 C 1.46910 * 110.99876 * 174.16266 * 17 16 15 19 19 H 1.08997 * 109.47184 * 300.01965 * 1 2 3 20 20 H 1.09000 * 109.47372 * 60.01985 * 1 2 3 21 21 H 1.09003 * 109.47100 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.49873 * 60.86782 * 4 2 1 23 23 H 1.08997 * 109.50246 * 300.75023 * 4 2 1 24 24 H 0.96700 * 114.00311 * 180.31797 * 6 5 4 25 25 H 0.97003 * 119.99516 * 180.02562 * 10 9 7 26 26 H 1.09006 * 109.50115 * 62.28432 * 15 5 4 27 27 H 1.09002 * 109.50437 * 182.35830 * 15 5 4 28 28 H 1.09000 * 109.46459 * 179.19298 * 16 15 5 29 29 H 1.08999 * 109.46142 * 299.16219 * 16 15 5 30 30 H 1.08999 * 109.46790 * 56.04660 * 18 17 16 31 31 H 1.08996 * 109.47153 * 176.04812 * 18 17 16 32 32 H 1.08994 * 109.46603 * 296.04781 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7209 -1.2501 5 6 3.5707 -0.7362 -1.2358 6 8 4.0516 -1.4576 -2.3717 7 6 4.0903 0.6777 -1.2803 8 1 3.3985 1.5062 -1.3178 9 6 5.4487 0.9135 -1.2730 10 7 6.2910 -0.0955 -1.2277 11 14 6.0926 2.6662 -1.3274 12 1 6.2473 3.1799 0.0572 13 1 7.4094 2.6886 -2.0136 14 1 5.1332 3.5233 -2.0692 15 6 4.0546 -1.4191 0.0464 16 6 3.4864 -0.6780 1.2589 17 7 2.0193 -0.6918 1.1993 18 6 1.4375 -0.1106 2.4166 19 1 -0.3633 0.5141 0.8898 20 1 -0.3634 0.5135 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.6892 -0.1980 -2.1400 23 1 1.6656 -1.7446 -1.2577 24 1 5.0157 -1.5116 -2.4241 25 1 7.2467 0.0705 -1.2222 26 1 3.7121 -2.4539 0.0591 27 1 5.1437 -1.3958 0.0824 28 1 3.8174 -1.1703 2.1733 29 1 3.8404 0.3529 1.2530 30 1 1.8281 0.8967 2.5607 31 1 0.3529 -0.0689 2.3167 32 1 1.6998 -0.7284 3.2753 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157143845.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = -73.427343 kcal Electronic energy + Delta-G solvation = -13968.430686 eV Core-core repulsion = 11734.752669 eV Total energy + Delta-G solvation = -2233.678017 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.36973 -37.26551 -34.17916 -33.14934 -32.51634 -28.36905 -27.27617 -26.21842 -23.45770 -21.88928 -20.56527 -18.41125 -17.11079 -16.77356 -16.36497 -15.79882 -15.45560 -15.08412 -14.46361 -14.18426 -13.59017 -13.47169 -12.96881 -12.85262 -12.64591 -12.57363 -12.43374 -12.34635 -12.08498 -11.88277 -11.74304 -11.31694 -10.82538 -10.57171 -9.97748 -9.11527 -8.15488 -6.32071 1.36023 1.39322 1.47845 2.37476 3.05100 3.14861 3.89727 4.14918 4.26241 4.40411 4.52648 4.68146 4.70502 4.76430 4.82228 4.88486 4.97671 5.02282 5.10078 5.24078 5.31445 5.38016 5.45645 5.50066 5.60319 5.96486 6.24576 6.33443 6.40800 6.72432 7.36911 7.49839 8.85759 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.036329 B = 0.014115 C = 0.013058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.548193 B = 1983.254528 C = 2143.844592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.093 3.907 3 H 0.026 0.974 4 C -0.084 4.084 5 C 0.230 3.770 6 O -0.607 6.607 7 C -0.542 4.542 8 H 0.048 0.952 9 C 0.029 3.971 10 N -0.913 5.913 11 Si 0.950 3.050 12 H -0.276 1.276 13 H -0.280 1.280 14 H -0.275 1.275 15 C -0.125 4.125 16 C 0.082 3.918 17 N -0.545 5.545 18 C 0.020 3.980 19 H 0.074 0.926 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.048 0.952 23 H 0.049 0.951 24 H 0.374 0.626 25 H 0.268 0.732 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.019 0.981 30 H 0.016 0.984 31 H 0.089 0.911 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 1.068 5.468 8.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.015 4.015 3 H 0.044 0.956 4 C -0.122 4.122 5 C 0.191 3.809 6 O -0.415 6.415 7 C -0.580 4.580 8 H 0.066 0.934 9 C -0.170 4.170 10 N -0.554 5.554 11 Si 0.776 3.224 12 H -0.202 1.202 13 H -0.206 1.206 14 H -0.200 1.200 15 C -0.164 4.164 16 C -0.046 4.046 17 N -0.271 5.271 18 C -0.128 4.128 19 H 0.092 0.908 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.068 0.932 24 H 0.223 0.777 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.108 0.892 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.630 0.488 5.324 9.317 hybrid contribution 1.712 1.706 -0.062 2.418 sum -5.918 2.194 5.263 8.218 Atomic orbital electron populations 1.21899 0.92420 1.02728 1.02491 1.21444 0.95907 0.94715 0.89424 0.95595 1.21396 0.95053 0.99128 0.96662 1.18996 0.90403 0.88992 0.82500 1.86095 1.27382 1.78195 1.49865 1.21855 0.92088 0.93274 1.50773 0.93422 1.25611 0.97050 1.00557 0.93797 1.69679 1.02956 1.31539 1.51179 0.85683 0.77712 0.80830 0.78146 1.20182 1.20580 1.19983 1.22019 1.01736 0.96418 0.96227 1.21750 0.87005 0.98239 0.97591 1.62052 1.07259 1.54926 1.02829 1.22525 1.01112 0.97148 0.92015 0.90770 0.91706 0.91693 0.93282 0.93233 0.77671 0.92251 0.95245 0.90939 0.91432 0.96306 0.96531 0.89214 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.97 8.79 71.98 0.63 -3.34 16 2 C 0.09 3.59 2.23 44.94 0.10 3.69 16 3 H 0.03 1.12 6.79 -2.38 -0.02 1.10 16 4 C -0.08 -3.79 4.49 30.65 0.14 -3.65 16 5 C 0.23 11.84 0.85 -11.46 -0.01 11.83 16 6 O -0.61 -33.46 12.97 -148.98 -1.93 -35.39 16 7 C -0.54 -29.33 6.43 25.60 0.16 -29.16 16 8 H 0.05 2.61 6.88 -2.91 -0.02 2.59 16 9 C 0.03 1.56 5.22 84.65 0.44 2.00 16 10 N -0.91 -49.25 9.68 21.44 0.21 -49.04 16 11 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 C -0.13 -6.11 5.04 30.64 0.15 -5.95 16 16 C 0.08 3.50 5.25 86.33 0.45 3.95 16 17 N -0.55 -20.38 4.75 -897.18 -4.26 -24.63 16 18 C 0.02 0.57 9.30 127.69 1.19 1.75 16 19 H 0.07 1.79 6.15 -2.39 -0.01 1.77 16 20 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 22 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 23 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.37 20.88 7.15 -74.06 -0.53 20.35 16 25 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 26 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.07 3.84 6.03 -2.39 -0.01 3.83 16 28 H 0.07 2.59 8.12 -2.39 -0.02 2.57 16 29 H 0.02 0.88 7.31 -2.39 -0.02 0.86 16 30 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 2.15 5.75 -2.39 -0.01 2.14 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -57.94 245.33 -0.12 -58.07 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.57 Total: 25.15 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: 3.26 Total: -18.88 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -4.05 Total: -73.67 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.93 Total: -35.39 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -57.94 -0.12 -58.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157143845.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.360 kcal (2) G-P(sol) polarization free energy of solvation -57.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds