Wall clock time and date at job start Mon Mar 30 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.45523 * 2 1 4 4 C 1.53044 * 109.46049 * 119.96943 * 2 1 3 5 5 C 1.53120 * 109.27903 * 179.19340 * 4 2 1 6 6 O 1.42904 * 109.51938 * 62.25121 * 5 4 2 7 7 C 1.50696 * 109.52094 * 182.43961 * 5 4 2 8 8 H 1.08001 * 119.99888 * 115.27651 * 7 5 4 9 9 C 1.37878 * 120.00247 * 295.26975 * 7 5 4 10 10 N 1.31513 * 120.00273 * 188.30761 * 9 7 5 11 11 Si 1.86803 * 119.99954 * 8.30378 * 9 7 5 12 12 H 1.48499 * 109.46929 * 84.79735 * 11 9 7 13 13 H 1.48493 * 109.47309 * 204.79630 * 11 9 7 14 14 H 1.48504 * 109.47051 * 324.79756 * 11 9 7 15 15 C 1.53115 * 109.16030 * 302.34921 * 5 4 2 16 16 C 1.53027 * 109.28163 * 57.65504 * 15 5 4 17 17 N 1.46848 * 109.52293 * 300.81585 * 16 15 5 18 18 C 1.46902 * 111.00283 * 185.83642 * 17 16 15 19 19 H 1.08993 * 109.47005 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46875 * 299.98137 * 1 2 3 21 21 H 1.09004 * 109.46758 * 59.97835 * 1 2 3 22 22 H 1.09007 * 109.50054 * 299.13528 * 4 2 1 23 23 H 1.08996 * 109.50161 * 59.25559 * 4 2 1 24 24 H 0.96705 * 113.99548 * 179.97438 * 6 5 4 25 25 H 0.96996 * 119.99899 * 180.02562 * 10 9 7 26 26 H 1.09002 * 109.50348 * 177.59796 * 15 5 4 27 27 H 1.09005 * 109.50343 * 297.66945 * 15 5 4 28 28 H 1.09003 * 109.46383 * 180.80526 * 16 15 5 29 29 H 1.08999 * 109.46649 * 60.83755 * 16 15 5 30 30 H 1.08999 * 109.47562 * 295.79900 * 18 17 16 31 31 H 1.09000 * 109.47251 * 175.79339 * 18 17 16 32 32 H 1.08999 * 109.46626 * 55.79538 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5709 -0.7361 1.2357 6 8 4.0622 0.6052 1.2771 7 6 4.0782 -1.4967 2.4337 8 1 4.6246 -2.4181 2.2965 9 6 3.8448 -1.0164 3.7048 10 7 4.4227 -1.5863 4.7396 11 14 2.7078 0.4441 3.9572 12 1 1.3020 -0.0293 4.0272 13 1 3.0614 1.1337 5.2239 14 1 2.8559 1.3889 2.8212 15 6 4.0547 -1.4188 -0.0465 16 6 3.4866 -0.6778 -1.2589 17 7 2.0194 -0.6919 -1.1993 18 6 1.4374 -0.1107 -2.4165 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5136 0.8902 21 1 -0.3633 0.5142 -0.8898 22 1 1.6894 -0.1980 2.1400 23 1 1.6659 -1.7446 1.2577 24 1 5.0270 0.6711 1.2711 25 1 4.2582 -1.2485 5.6338 26 1 5.1439 -1.3948 -0.0829 27 1 3.7130 -2.4539 -0.0589 28 1 3.8176 -1.1701 -2.1733 29 1 3.8405 0.3531 -1.2531 30 1 1.7121 0.9420 -2.4838 31 1 0.3518 -0.2013 -2.3792 32 1 1.8165 -0.6416 -3.2897 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157143995.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:08 Heat of formation + Delta-G solvation = -66.380653 kcal Electronic energy + Delta-G solvation = -13964.164715 eV Core-core repulsion = 11730.792265 eV Total energy + Delta-G solvation = -2233.372450 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.56405 -37.30804 -34.46676 -33.30952 -32.75877 -28.98011 -27.57639 -25.74015 -23.80962 -21.74582 -20.48307 -19.13232 -17.23077 -16.75713 -16.36187 -16.03847 -15.69194 -15.16454 -14.68473 -14.29236 -14.06197 -13.42809 -13.16435 -13.00493 -12.95349 -12.71670 -12.63050 -12.17747 -12.02054 -11.76437 -11.63956 -11.51890 -10.88448 -10.52250 -10.01552 -9.14424 -8.36884 -6.47105 1.33194 1.41187 1.65040 2.38770 3.00470 3.04856 3.78410 4.00120 4.14089 4.18895 4.34801 4.47356 4.58657 4.61823 4.71183 4.71944 4.87385 4.90979 4.98049 5.05002 5.14852 5.17502 5.34369 5.42507 5.58615 5.69480 6.11003 6.22360 6.32106 6.62871 7.18306 7.36749 8.78101 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.045366 B = 0.014697 C = 0.012538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.057217 B = 1904.748234 C = 2232.614581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.031 0.969 4 C -0.095 4.095 5 C 0.218 3.782 6 O -0.581 6.581 7 C -0.553 4.553 8 H 0.035 0.965 9 C 0.033 3.967 10 N -0.939 5.939 11 Si 0.941 3.059 12 H -0.281 1.281 13 H -0.313 1.313 14 H -0.213 1.213 15 C -0.120 4.120 16 C 0.067 3.933 17 N -0.548 5.548 18 C 0.023 3.977 19 H 0.063 0.937 20 H 0.056 0.944 21 H 0.077 0.923 22 H 0.041 0.959 23 H 0.064 0.936 24 H 0.369 0.631 25 H 0.265 0.735 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.031 0.969 30 H 0.022 0.978 31 H 0.082 0.918 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.242 5.055 -12.841 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.178 3.822 6 O -0.388 6.388 7 C -0.591 4.591 8 H 0.053 0.947 9 C -0.167 4.167 10 N -0.579 5.579 11 Si 0.769 3.231 12 H -0.209 1.209 13 H -0.242 1.242 14 H -0.135 1.135 15 C -0.159 4.159 16 C -0.060 4.060 17 N -0.274 5.274 18 C -0.125 4.125 19 H 0.083 0.917 20 H 0.075 0.925 21 H 0.096 0.904 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.216 0.784 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.005 4.696 -12.662 15.213 hybrid contribution 0.768 0.783 0.942 1.446 sum -6.237 5.479 -11.719 14.362 Atomic orbital electron populations 1.21930 0.93147 1.02760 1.02343 1.21552 0.95965 0.94814 0.89960 0.95107 1.21802 0.95345 1.00090 0.96056 1.19033 0.91143 0.80065 0.91959 1.86479 1.25971 1.29475 1.96865 1.21801 1.36396 1.09241 0.91650 0.94666 1.25756 0.96104 0.99207 0.95584 1.70090 1.44063 1.44035 0.99671 0.86098 0.78169 0.81635 0.77209 1.20871 1.24167 1.13537 1.21982 0.99687 0.99572 0.94632 1.21989 0.87139 0.98735 0.98171 1.61962 1.07554 1.55248 1.02591 1.22479 1.01154 0.97136 0.91686 0.91743 0.92542 0.90394 0.94091 0.91687 0.78368 0.92596 0.91891 0.92506 0.89477 0.95029 0.95931 0.89971 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.76 71.98 0.63 -3.45 16 2 C 0.09 3.01 2.31 44.94 0.10 3.11 16 3 H 0.03 1.17 7.76 -2.39 -0.02 1.15 16 4 C -0.10 -4.13 3.87 30.65 0.12 -4.01 16 5 C 0.22 9.97 0.54 -11.46 -0.01 9.97 16 6 O -0.58 -25.54 8.79 -148.98 -1.31 -26.85 16 7 C -0.55 -31.39 8.80 25.60 0.23 -31.16 16 8 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 9 C 0.03 1.93 5.45 84.66 0.46 2.39 16 10 N -0.94 -59.20 13.96 21.45 0.30 -58.90 16 11 Si 0.94 46.82 23.84 68.60 1.64 48.46 16 12 H -0.28 -13.60 6.92 99.48 0.69 -12.91 16 13 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 14 H -0.21 -10.09 5.45 99.48 0.54 -9.55 16 15 C -0.12 -4.72 5.02 30.64 0.15 -4.56 16 16 C 0.07 2.16 5.33 86.32 0.46 2.62 16 17 N -0.55 -17.33 4.75 -897.16 -4.26 -21.59 16 18 C 0.02 0.54 9.05 127.69 1.16 1.69 16 19 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 20 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 21 H 0.08 1.77 6.33 -2.38 -0.02 1.76 16 22 H 0.04 1.88 3.40 -2.38 -0.01 1.88 16 23 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 24 H 0.37 14.50 9.04 -74.05 -0.67 13.83 16 25 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 26 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 28 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 29 H 0.03 1.03 7.76 -2.39 -0.02 1.01 16 30 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 1.69 6.21 -2.39 -0.01 1.68 16 32 H 0.08 1.59 8.09 -2.39 -0.02 1.57 16 Total: -1.00 -65.90 241.77 -0.09 -65.99 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.24 Total: 16.30 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.30 Total: -23.41 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -3.96 Total: -80.49 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -1.31 Total: -26.85 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.64 Total: 48.46 kcal Total: -65.90 -0.09 -65.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157143995.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.391 kcal (2) G-P(sol) polarization free energy of solvation -65.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds