Wall clock time and date at job start Mon Mar 30 2020 02:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.86780 * 2 1 4 4 O 1.43735 * 109.88169 * 238.83590 * 2 1 3 5 5 C 1.44385 * 106.97509 * 267.09110 * 4 2 1 6 6 C 1.55227 * 103.56482 * 320.00776 * 5 4 2 7 7 C 1.54098 * 109.87869 * 120.99909 * 2 1 3 8 8 H 1.09008 * 110.48826 * 358.59043 * 7 2 1 9 9 C 1.52993 * 110.49028 * 236.07200 * 7 2 1 10 10 N 1.46910 * 109.47162 * 176.84244 * 9 7 2 11 11 C 1.46895 * 110.99769 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46770 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 H 1.09002 * 109.47232 * 298.99673 * 1 2 3 21 21 H 1.09003 * 109.47061 * 59.00232 * 1 2 3 22 22 H 1.08996 * 109.47031 * 178.99250 * 1 2 3 23 23 H 1.08996 * 110.61761 * 78.44097 * 5 4 2 24 24 H 1.08998 * 110.61666 * 201.28162 * 5 4 2 25 25 H 1.08996 * 110.89299 * 278.75071 * 6 5 4 26 26 H 1.08996 * 111.02323 * 155.07161 * 6 5 4 27 27 H 1.09005 * 109.47376 * 56.85022 * 9 7 2 28 28 H 1.08991 * 109.47342 * 296.84559 * 9 7 2 29 29 H 1.00894 * 110.99909 * 303.95838 * 10 9 7 30 30 H 1.09004 * 109.47258 * 60.00516 * 11 10 9 31 31 H 1.08994 * 109.47601 * 300.00108 * 11 10 9 32 32 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6995 -1.1566 5 6 2.2281 -2.0724 -0.7617 6 6 2.8317 -1.9534 0.6634 7 6 2.0540 -0.7464 1.2422 8 1 1.2237 -1.0884 1.8602 9 6 2.9883 0.1536 2.0532 10 7 3.4143 -0.5520 3.2693 11 6 4.3151 0.2836 4.0744 12 6 4.7304 -0.4722 5.3103 13 1 4.3624 -1.4732 5.4805 14 6 5.5854 0.1120 6.2209 15 7 6.0339 1.3308 6.0135 16 14 6.1062 -0.8276 7.7489 17 1 6.8062 -2.0747 7.3487 18 1 7.0208 0.0152 8.5605 19 1 4.9055 -1.1702 8.5528 20 1 -0.3634 0.4982 0.8988 21 1 -0.3633 0.5293 -0.8809 22 1 -0.3633 -1.0275 -0.0181 23 1 1.2814 -2.6118 -0.7319 24 1 2.9274 -2.5640 -1.4380 25 1 3.8999 -1.7416 0.6166 26 1 2.6404 -2.8548 1.2456 27 1 2.4631 1.0681 2.3290 28 1 3.8631 0.4039 1.4531 29 1 2.6177 -0.8517 3.8112 30 1 3.7995 1.1992 4.3641 31 1 5.1991 0.5343 3.4881 32 1 6.6351 1.7419 6.6543 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235364883.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:12 Heat of formation + Delta-G solvation = -84.126834 kcal Electronic energy + Delta-G solvation = -12787.513680 eV Core-core repulsion = 10553.371698 eV Total energy + Delta-G solvation = -2234.141982 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68966 -37.20042 -34.85399 -33.08180 -32.04082 -29.49195 -27.42934 -24.65556 -23.41769 -22.36267 -21.40921 -18.60979 -17.40085 -17.18730 -16.59005 -16.05231 -15.49772 -15.08963 -14.98169 -14.25667 -14.15598 -13.61333 -13.54007 -12.92157 -12.78681 -12.76054 -12.64154 -12.28490 -12.11497 -11.84032 -11.64534 -11.52979 -11.20904 -10.66952 -10.56515 -9.14362 -8.23672 -6.35538 1.41255 1.45099 1.53188 2.39547 3.00507 3.09653 3.35936 3.74811 3.87216 4.08554 4.23169 4.34296 4.43678 4.47734 4.61320 4.71584 4.73028 4.91899 4.96291 5.08060 5.08878 5.20465 5.23940 5.28418 5.35937 5.59628 5.99753 6.00595 6.41537 6.70101 6.87728 7.35723 8.87974 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.070500 B = 0.006310 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.068488 B = 4436.680604 C = 4567.741423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.395 6.395 5 C 0.045 3.955 6 C -0.135 4.135 7 C -0.106 4.106 8 H 0.093 0.907 9 C 0.070 3.930 10 N -0.683 5.683 11 C 0.208 3.792 12 C -0.537 4.537 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.976 3.024 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.264 1.264 20 H 0.073 0.927 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.020 0.980 28 H 0.051 0.949 29 H 0.336 0.664 30 H -0.040 1.040 31 H -0.004 1.004 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 -5.607 -10.049 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 H 0.103 0.897 4 O -0.315 6.315 5 C -0.031 4.031 6 C -0.173 4.173 7 C -0.125 4.125 8 H 0.112 0.888 9 C -0.060 4.060 10 N -0.314 5.314 11 C 0.080 3.920 12 C -0.576 4.576 13 H 0.085 0.915 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.800 3.200 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.189 1.189 20 H 0.092 0.908 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.153 0.847 30 H -0.022 1.022 31 H 0.014 0.986 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.513 -5.707 -10.506 15.279 hybrid contribution 0.004 0.662 1.363 1.515 sum -9.509 -5.045 -9.143 14.124 Atomic orbital electron populations 1.22214 0.93793 1.03028 1.02930 1.22823 0.95071 0.96481 0.84114 0.89719 1.88847 1.86423 1.22224 1.34012 1.23756 1.00650 0.83465 0.95231 1.23053 0.99861 0.98354 0.96057 1.22540 0.97983 0.95749 0.96251 0.88845 1.21962 0.97216 0.94635 0.92152 1.60504 1.20744 1.41993 1.08137 1.19200 0.90836 0.90411 0.91582 1.21531 1.28646 1.01742 1.05632 0.91500 1.26005 0.95908 0.95901 1.02057 1.70095 1.34017 1.15476 1.38006 0.85339 0.78373 0.78244 0.78052 1.19280 1.20827 1.18922 0.90798 0.91560 0.91616 0.90680 0.88037 0.92207 0.89399 0.96232 0.93065 0.84661 1.02204 0.98563 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.30 71.98 0.67 -2.53 16 2 C 0.07 1.85 3.76 30.97 0.12 1.96 16 3 H 0.08 2.23 7.69 -2.38 -0.02 2.21 16 4 O -0.40 -10.82 11.19 -148.98 -1.67 -12.48 16 5 C 0.04 1.00 7.67 72.75 0.56 1.56 16 6 C -0.14 -3.58 6.58 31.98 0.21 -3.37 16 7 C -0.11 -2.92 2.85 -9.80 -0.03 -2.94 16 8 H 0.09 2.33 7.70 -2.38 -0.02 2.31 16 9 C 0.07 2.51 4.79 86.30 0.41 2.93 16 10 N -0.68 -29.40 6.34 -517.94 -3.28 -32.68 16 11 C 0.21 11.33 5.44 85.56 0.47 11.80 16 12 C -0.54 -30.90 9.32 25.60 0.24 -30.66 16 13 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 14 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 15 N -0.94 -57.22 13.29 21.45 0.28 -56.94 16 16 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 20 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 1.18 8.11 -2.39 -0.02 1.16 16 23 H 0.08 1.37 8.11 -2.39 -0.02 1.36 16 24 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.06 1.85 7.80 -2.39 -0.02 1.83 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.05 1.98 8.04 -2.39 -0.02 1.97 16 29 H 0.34 13.46 8.72 -89.70 -0.78 12.68 16 30 H -0.04 -2.32 8.14 -2.38 -0.02 -2.34 16 31 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -64.60 266.13 0.76 -63.83 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.30 Total: 12.76 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 3.11 Total: -20.82 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -3.00 Total: -89.62 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.67 Total: -12.48 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -64.60 0.76 -63.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235364883.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.292 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds