Wall clock time and date at job start Mon Mar 30 2020 02:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.33227 * 2 1 4 4 O 1.44419 * 110.37520 * 237.62440 * 2 1 3 5 5 C 1.44421 * 105.27785 * 200.65877 * 4 2 1 6 6 C 1.54486 * 104.80269 * 40.51394 * 5 4 2 7 7 C 1.54487 * 110.36782 * 122.24417 * 2 1 3 8 8 C 1.52998 * 110.51105 * 24.16859 * 7 2 1 9 9 N 1.46896 * 110.50942 * 261.45749 * 7 2 1 10 10 C 1.46903 * 110.99811 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47344 * 179.97438 * 10 9 7 12 12 H 1.07995 * 119.99565 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00289 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99504 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00330 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47211 * 89.99975 * 15 13 11 17 17 H 1.48494 * 109.47202 * 210.00252 * 15 13 11 18 18 H 1.48507 * 109.46895 * 330.00235 * 15 13 11 19 19 H 1.08995 * 109.47331 * 297.75646 * 1 2 3 20 20 H 1.08999 * 109.46826 * 57.76065 * 1 2 3 21 21 H 1.09007 * 109.47229 * 177.74760 * 1 2 3 22 22 H 1.09003 * 110.37508 * 159.34336 * 5 4 2 23 23 H 1.09005 * 110.37445 * 281.57074 * 5 4 2 24 24 H 1.09004 * 110.51003 * 217.37841 * 6 5 4 25 25 H 1.08993 * 110.50905 * 94.66610 * 6 5 4 26 26 H 1.09004 * 109.47328 * 59.99979 * 8 7 2 27 27 H 1.08997 * 109.46902 * 180.02562 * 8 7 2 28 28 H 1.09003 * 109.46996 * 299.99620 * 8 7 2 29 29 H 1.00904 * 111.00095 * 303.95091 * 9 7 2 30 30 H 1.09002 * 109.47078 * 299.99770 * 10 9 7 31 31 H 1.09004 * 109.47103 * 59.99588 * 10 9 7 32 32 H 0.97003 * 119.99429 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 8 2.0328 -0.7249 -1.1434 5 6 3.3873 -1.0880 -0.7982 6 6 3.3177 -1.5050 0.6877 7 6 2.0677 -0.7727 1.2249 8 6 1.0286 -1.7798 1.7218 9 7 2.4384 0.1586 2.2988 10 6 2.9520 -0.5653 3.4694 11 6 3.3216 0.4207 4.5474 12 1 3.1880 1.4792 4.3798 13 6 3.8294 -0.0285 5.7479 14 7 3.9917 -1.3176 5.9520 15 14 4.2870 1.1937 7.0844 16 1 3.1103 1.4363 7.9572 17 1 5.4014 0.6440 7.8974 18 1 4.7129 2.4725 6.4610 19 1 -0.3634 0.4786 0.9094 20 1 -0.3633 0.5482 -0.8692 21 1 -0.3634 -1.0269 -0.0404 22 1 3.7242 -1.9239 -1.4114 23 1 4.0529 -0.2339 -0.9236 24 1 4.2108 -1.1760 1.2190 25 1 3.1954 -2.5844 0.7761 26 1 0.8019 -2.4903 0.9268 27 1 1.4247 -2.3144 2.5852 28 1 0.1188 -1.2520 2.0078 29 1 3.1083 0.8389 1.9722 30 1 2.1841 -1.2423 3.8436 31 1 3.8340 -1.1386 3.1838 32 1 4.3486 -1.6336 6.7968 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235439088.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:43 Heat of formation + Delta-G solvation = -72.405564 kcal Electronic energy + Delta-G solvation = -13365.125186 eV Core-core repulsion = 11131.491476 eV Total energy + Delta-G solvation = -2233.633710 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.08154 -37.00817 -34.79157 -32.86890 -31.73121 -28.65990 -28.38763 -25.62709 -23.97945 -22.56883 -20.11314 -18.75507 -17.25104 -16.87097 -16.60927 -16.37004 -15.59565 -15.22882 -14.64023 -14.41655 -13.60709 -13.51785 -13.28659 -13.06681 -12.85300 -12.76133 -12.71502 -12.35842 -12.17238 -11.95967 -11.67696 -11.39333 -11.22539 -10.69732 -10.60088 -9.11254 -8.22138 -6.32331 1.40902 1.42183 1.53195 2.39504 2.93289 3.11453 3.38460 3.72437 3.89074 3.95202 4.16936 4.22308 4.47727 4.60620 4.67772 4.72245 4.82062 4.91626 4.95993 5.06273 5.13261 5.21826 5.24272 5.35897 5.39585 5.60526 5.83857 6.06099 6.46252 6.72251 6.89684 7.38105 8.89020 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.056820 B = 0.008408 C = 0.008195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.666556 B = 3329.399195 C = 3415.949203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.070 0.930 4 O -0.384 6.384 5 C 0.052 3.948 6 C -0.186 4.186 7 C 0.079 3.921 8 C -0.127 4.127 9 N -0.671 5.671 10 C 0.211 3.789 11 C -0.536 4.536 12 H 0.063 0.937 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.970 3.030 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.264 1.264 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.109 0.891 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.333 0.667 30 H 0.008 0.992 31 H -0.034 1.034 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 1.253 -11.034 11.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.027 3.973 3 H 0.088 0.912 4 O -0.304 6.304 5 C -0.024 4.024 6 C -0.226 4.226 7 C -0.013 4.013 8 C -0.185 4.185 9 N -0.302 5.302 10 C 0.084 3.916 11 C -0.575 4.575 12 H 0.081 0.919 13 C -0.196 4.196 14 N -0.573 5.573 15 Si 0.794 3.206 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.188 1.188 19 H 0.093 0.907 20 H 0.089 0.911 21 H 0.086 0.914 22 H 0.127 0.873 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.026 0.974 31 H -0.017 1.017 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.972 1.130 -10.859 11.618 hybrid contribution 1.513 -0.051 0.916 1.769 sum -2.459 1.079 -9.943 10.299 Atomic orbital electron populations 1.21804 0.91724 1.03159 1.02730 1.22953 0.96607 0.94653 0.83108 0.91200 1.89068 1.27836 1.74882 1.38566 1.23395 0.84321 1.00694 0.94036 1.23686 0.99390 1.01879 0.97615 1.22404 0.94388 0.92662 0.91825 1.21848 0.98543 0.97833 1.00238 1.60636 1.47258 1.16200 1.06059 1.19218 0.91758 0.93063 0.87609 1.21582 1.41804 0.94112 0.99959 0.91918 1.25904 0.95538 0.97148 1.01010 1.70091 1.46532 1.14909 1.25733 0.85376 0.77845 0.78896 0.78438 1.19969 1.20795 1.18799 0.90745 0.91118 0.91400 0.87327 0.91592 0.92060 0.90952 0.90926 0.94629 0.91328 0.84972 0.97354 1.01675 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.36 71.98 0.60 -2.93 16 2 C 0.08 2.54 3.54 31.10 0.11 2.65 16 3 H 0.07 2.09 7.95 -2.39 -0.02 2.07 16 4 O -0.38 -11.50 11.34 -148.98 -1.69 -13.19 16 5 C 0.05 1.41 7.63 72.49 0.55 1.96 16 6 C -0.19 -6.16 5.87 31.61 0.19 -5.98 16 7 C 0.08 2.79 0.87 4.55 0.00 2.79 16 8 C -0.13 -4.41 6.88 71.98 0.50 -3.91 16 9 N -0.67 -28.32 6.08 -469.10 -2.85 -31.17 16 10 C 0.21 11.07 4.74 85.56 0.41 11.47 16 11 C -0.54 -30.34 9.32 25.60 0.24 -30.10 16 12 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 15 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 19 H 0.07 1.96 7.73 -2.39 -0.02 1.94 16 20 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 21 H 0.07 1.69 6.69 -2.38 -0.02 1.67 16 22 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 24 H 0.06 2.26 6.86 -2.39 -0.02 2.25 16 25 H 0.07 2.37 7.73 -2.39 -0.02 2.35 16 26 H 0.07 2.17 7.74 -2.38 -0.02 2.15 16 27 H 0.03 1.42 6.32 -2.39 -0.02 1.40 16 28 H 0.07 2.28 6.69 -2.39 -0.02 2.26 16 29 H 0.33 13.48 8.61 -89.69 -0.77 12.71 16 30 H 0.01 0.48 6.29 -2.39 -0.02 0.47 16 31 H -0.03 -1.94 6.71 -2.39 -0.02 -1.95 16 32 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -62.13 254.09 1.15 -60.98 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.33 Total: 16.39 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.06 Total: -23.45 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -2.57 Total: -86.92 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.69 Total: -13.19 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -62.13 1.15 -60.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235439088.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.424 kcal (2) G-P(sol) polarization free energy of solvation -62.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds